EvaNet: Elevation-Guided Flood Extent Mapping on Earth Imagery

Accurate and timely mapping of flood extent from high-resolution satellite imagery plays a crucial role in disaster management such as damage assessment and relief activities. However, current state-of-the-art solutions are based on U-Net, which can-not segment the flood pixels accurately due to the ambiguous pixels (e.g., tree canopies, clouds) that prevent a direct judgement from only the spectral features. Thanks to the digital elevation model (DEM) data readily available from sources such as United States Geological Survey (USGS), this work explores the use of an elevation map to improve flood extent mapping. We propose, EvaNet, an elevation-guided segmentation model based on the encoder-decoder architecture with two novel techniques: (1) a loss function encoding the physical law of gravity that if a location is flooded (resp. dry), then its adjacent locations with a lower (resp. higher) elevation must also be flooded (resp. dry); (2) a new (de)convolution operation that integrates the elevation map by a location sensitive gating mechanism to regulate how much spectral features flow through adjacent layers. Extensive experiments show that EvaNet significantly outperforms the U-Net baselines, and works as a perfect drop-in replacement for U-Net in existing solutions to flood extent mapping.

SimFair: Physics-Guided Fairness-Aware Learning with Simulation Models

Fairness-awareness has emerged as an essential building block for the responsible use of artificial intelligence in real applications. In many cases, inequity in performance is due to the change in distribution over different regions. While techniques have been developed to improve the transferability of fairness, a solution to the problem is not always feasible with no samples from the new regions, which is a bottleneck for pure data-driven attempts. Fortunately, physics-based mechanistic models have been studied for many problems with major social impacts. We propose SimFair, a physics-guided fairness-aware learning framework, which bridges the data limitation by integrating physical-rule-based simulation and inverse modeling into the training design. Using temperature prediction as an example, we demonstrate the effectiveness of the proposed SimFair in fairness preservation.

XTSFormer: Cross-Temporal-Scale Transformer for Irregular Time Event Prediction

Event prediction aims to forecast the time and type of a future event based on a historical event sequence. Despite its significance, several challenges exist, including the irregularity of time intervals between consecutive events, the existence of cycles, periodicity, and multi-scale event interactions, as well as the high computational costs for long event sequences. Existing neural temporal point processes (TPPs) methods do not capture the multi-scale nature of event interactions, which is common in many real-world applications such as clinical event data. To address these issues, we propose the cross-temporal-scale transformer (XTSFormer), designed specifically for irregularly timed event data. Our model comprises two vital components: a novel Feature-based Cycle-aware Time Positional Encoding (FCPE) that adeptly captures the cyclical nature of time, and a hierarchical multi-scale temporal attention mechanism. These scales are determined by a bottom-up clustering algorithm. Extensive experiments on several real-world datasets show that our XTSFormer outperforms several baseline methods in prediction performance.

Post-Training Quantization for Re-parameterization via Coarse & Fine Weight Splitting

Although neural networks have made remarkable advancements in various applications, they require substantial computational and memory resources. Network quantization is a powerful technique to compress neural networks, allowing for more efficient and scalable AI deployments. Recently, Re-parameterization has emerged as a promising technique to enhance model performance while simultaneously alleviating the computational burden in various computer vision tasks. However, the accuracy drops significantly when applying quantization on the re-parameterized networks. We identify that the primary challenge arises from the large variation in weight distribution across the original branches. To address this issue, we propose a coarse & fine weight splitting (CFWS) method to reduce quantization error of weight, and develop an improved KL metric to determine optimal quantization scales for activation. To the best of our knowledge, our approach is the first work that enables post-training quantization applicable on re-parameterized networks. For example, the quantized RepVGG-A1 model exhibits a mere 0.3% accuracy loss. The code is in https://github.com/NeonHo/Coarse-Fine-Weight-Split.git

Morphological Profiling for Drug Discovery in the Era of Deep Learning

Morphological profiling is a valuable tool in phenotypic drug discovery. The advent of high-throughput automated imaging has enabled the capturing of a wide range of morphological features of cells or organisms in response to perturbations at the single-cell resolution. Concurrently, significant advances in machine learning and deep learning, especially in computer vision, have led to substantial improvements in analyzing large-scale high-content images at high-throughput. These efforts have facilitated understanding of compound mechanism-of-action (MOA), drug repurposing, characterization of cell morphodynamics under perturbation, and ultimately contributing to the development of novel therapeutics. In this review, we provide a comprehensive overview of the recent advances in the field of morphological profiling. We summarize the image profiling analysis workflow, survey a broad spectrum of analysis strategies encompassing feature engineering- and deep learning-based approaches, and introduce publicly available benchmark datasets. We place a particular emphasis on the application of deep learning in this pipeline, covering cell segmentation, image representation learning, and multimodal learning. Additionally, we illuminate the application of morphological profiling in phenotypic drug discovery and highlight potential challenges and opportunities in this field.

Spatial Knowledge-Infused Hierarchical Learning: An Application in Flood Mapping on Earth Imagery

Deep learning for Earth imagery plays an increasingly important role in geoscience applications such as agriculture, ecology, and natural disaster management. Still, progress is often hindered by the limited training labels. Given Earth imagery with limited training labels, a base deep neural network model, and a spatial knowledge base with label constraints, our problem is to infer the full labels while training the neural network. The problem is challenging due to the sparse and noisy input labels, spatial uncertainty within the label inference process, and high computational costs associated with a large number of sample locations. Existing works on neuro-symbolic models focus on integrating symbolic logic into neural networks (e.g., loss function, model architecture, and training label augmentation), but these methods do not fully address the challenges of spatial data (e.g., spatial uncertainty, the trade-off between spatial granularity and computational costs). To bridge this gap, we propose a novel Spatial Knowledge-Infused Hierarchical Learning (SKI-HL) framework that iteratively infers sample labels within a multi-resolution hierarchy. Our framework consists of a module to selectively infer labels in different resolutions based on spatial uncertainty and a module to train neural network parameters with uncertainty-aware multi-instance learning. Extensive experiments on real-world flood mapping datasets show that the proposed model outperforms several baseline methods. The code is available at \url{https://github.com/ZelinXu2000/SKI-HL}.

A Hierarchical Spatial Transformer for Massive Point Samples in Continuous Space

Transformers are widely used deep learning architectures. Existing transformers are mostly designed for sequences (texts or time series), images or videos, and graphs. This paper proposes a novel transformer model for massive (up to a million) point samples in continuous space. Such data are ubiquitous in environment sciences (e.g., sensor observations), numerical simulations (e.g., particle-laden flow, astrophysics), and location-based services (e.g., POIs and trajectories). However, designing a transformer for massive spatial points is non-trivial due to several challenges, including implicit long-range and multi-scale dependency on irregular points in continuous space, a non-uniform point distribution, the potential high computational costs of calculating all-pair attention across massive points, and the risks of over-confident predictions due to varying point density. To address these challenges, we propose a new hierarchical spatial transformer model, which includes multi-resolution representation learning within a quad-tree hierarchy and efficient spatial attention via coarse approximation. We also design an uncertainty quantification branch to estimate prediction confidence related to input feature noise and point sparsity. We provide a theoretical analysis of computational time complexity and memory costs. Extensive experiments on both real-world and synthetic datasets show that our method outperforms multiple baselines in prediction accuracy and our model can scale up to one million points on one NVIDIA A100 GPU. The code is available at \url{https://github.com/spatialdatasciencegroup/HST}.

Uncertainty Quantification of Deep Learning for Spatiotemporal Data: Challenges and Opportunities

With the advancement of GPS, remote sensing, and computational simulations, large amounts of geospatial and spatiotemporal data are being collected at an increasing speed. Such emerging spatiotemporal big data assets, together with the recent progress of deep learning technologies, provide unique opportunities to transform society. However, it is widely recognized that deep learning sometimes makes unexpected and incorrect predictions with unwarranted confidence, causing severe consequences in high-stake decision-making applications (e.g., disaster management, medical diagnosis, autonomous driving). Uncertainty quantification (UQ) aims to estimate a deep learning model's confidence. This paper provides a brief overview of UQ of deep learning for spatiotemporal data, including its unique challenges and existing methods. We particularly focus on the importance of uncertainty sources. We identify several future research directions for spatiotemporal data.

Deep Learning for Spatiotemporal Big Data: A Vision on Opportunities and Challenges

With advancements in GPS, remote sensing, and computational simulation, an enormous volume of spatiotemporal data is being collected at an increasing speed from various application domains, spanning Earth sciences, agriculture, smart cities, and public safety. Such emerging geospatial and spatiotemporal big data, coupled with recent advances in deep learning technologies, foster new opportunities to solve problems that have not been possible before. For instance, remote sensing researchers can potentially train a foundation model using Earth imagery big data for numerous land cover and land use modeling tasks. Coastal modelers can train AI surrogates to speed up numerical simulations. However, the distinctive characteristics of spatiotemporal big data pose new challenges for deep learning technologies. This vision paper introduces various types of spatiotemporal big data, discusses new research opportunities in the realm of deep learning applied to spatiotemporal big data, lists the unique challenges, and identifies several future research needs.

A Survey on Uncertainty Quantification Methods for Deep Neural Networks: An Uncertainty Source Perspective

Deep neural networks (DNNs) have achieved tremendous success in making accurate predictions for computer vision, natural language processing, as well as science and engineering domains. However, it is also well-recognized that DNNs sometimes make unexpected, incorrect, but overconfident predictions. This can cause serious consequences in high-stake applications, such as autonomous driving, medical diagnosis, and disaster response. Uncertainty quantification (UQ) aims to estimate the confidence of DNN predictions beyond prediction accuracy. In recent years, many UQ methods have been developed for DNNs. It is of great practical value to systematically categorize these UQ methods and compare their advantages and disadvantages. However, existing surveys mostly focus on categorizing UQ methodologies from a neural network architecture perspective or a Bayesian perspective and ignore the source of uncertainty that each methodology can incorporate, making it difficult to select an appropriate UQ method in practice. To fill the gap, this paper presents a systematic taxonomy of UQ methods for DNNs based on the types of uncertainty sources (data uncertainty versus model uncertainty). We summarize the advantages and disadvantages of methods in each category. We show how our taxonomy of UQ methodologies can potentially help guide the choice of UQ method in different machine learning problems (e.g., active learning, robustness, and reinforcement learning). We also identify current research gaps and propose several future research directions.