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Active Learning to Classify Macromolecular Structures in situ for Less Supervision in Cryo-Electron Tomography

Feb 24, 2021
Xuefeng Du, Haohan Wang, Zhenxi Zhu, Xiangrui Zeng, Yi-Wei Chang, Jing Zhang, Eric Xing, Min Xu

* 14 ages 

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Feedback-Based Dynamic Feature Selection for Constrained Continuous Data Acquisition

Nov 10, 2020
Alp Sahin, Xiangrui Zeng

* submitted to ACC2021 

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Few shot domain adaptation for in situ macromolecule structural classification in cryo-electron tomograms

Jul 30, 2020
Liangyong Yu, Ran Li, Xiangrui Zeng, Hongyi Wang, Jie Jin, Ge Yang, Rui Jiang, Min Xu

* Bioinformatics 2020 
* This article has been accepted for publication in Bioinformatics Published by Oxford University Press 

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AITom: Open-source AI platform for cryo-electron Tomography data analysis

Nov 08, 2019
Xiangrui Zeng, Min Xu

* 1 figure 

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CS Sparse K-means: An Algorithm for Cluster-Specific Feature Selection in High-Dimensional Clustering

Oct 03, 2019
Xiangrui Zeng, Hongyu Zheng

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Deep Learning-Based Strategy for Macromolecules Classification with Imbalanced Data from Cellular Electron Cryotomography

Aug 27, 2019
Ziqian Luo, Xiangrui Zeng, Zhipeng Bao, Min Xu

* 2019 International Joint Conference on Neural Networks (IJCNN) 
* 13 pages. arXiv admin note: text overlap with arXiv:1710.09412, arXiv:1710.05381, arXiv:1708.02002 by other authors 

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Multi-task Learning for Macromolecule Classification, Segmentation and Coarse Structural Recovery in Cryo-Tomography

May 16, 2018
Chang Liu, Xiangrui Zeng, Kaiwen Wang, Qiang Guo, Min Xu

* British Machine Vision Conference (BMVC) 2018 

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Image-derived generative modeling of pseudo-macromolecular structures - towards the statistical assessment of Electron CryoTomography template matching

May 12, 2018
Kai Wen Wang, Xiangrui Zeng, Xiaodan Liang, Zhiguang Huo, Eric P. Xing, Min Xu

* British Machine Vision Conference (BMVC) 2018 

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An integration of fast alignment and maximum-likelihood methods for electron subtomogram averaging and classification

Apr 04, 2018
Yixiu Zhao, Xiangrui Zeng, Qiang Guo, Min Xu

* Intelligent Systems for Molecular Biology (ISMB) 2018, Bioinformatics 
* 17 pages 

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Deep learning based supervised semantic segmentation of Electron Cryo-Subtomograms

Feb 12, 2018
Chang Liu, Xiangrui Zeng, Ruogu Lin, Xiaodan Liang, Zachary Freyberg, Eric Xing, Min Xu

* IEEE International Conference on Image Processing (ICIP) 2018 
* 9 pages 

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Model compression for faster structural separation of macromolecules captured by Cellular Electron Cryo-Tomography

Jan 31, 2018
Jialiang Guo, Bo Zhou, Xiangrui Zeng, Zachary Freyberg, Min Xu

* International Conference on Image Analysis and Recognition (ICIAR) 2018 
* 8 pages 

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Feature Decomposition Based Saliency Detection in Electron Cryo-Tomograms

Jan 31, 2018
Bo Zhou, Qiang Guo, Xiangrui Zeng, Min Xu

* 14 pages 

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A convolutional autoencoder approach for mining features in cellular electron cryo-tomograms and weakly supervised coarse segmentation

Dec 28, 2017
Xiangrui Zeng, Miguel Ricardo Leung, Tzviya Zeev-Ben-Mordehai, Min Xu

* Accepted by Journal of Structural Biology 

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