Diffusion Transformer Model With Compact Prior for Low-dose PET Reconstruction

Positron emission tomography (PET) is an advanced medical imaging technique that plays a crucial role in non-invasive clinical diagnosis. However, while reducing radiation exposure through low-dose PET scans is beneficial for patient safety, it often results in insufficient statistical data. This scarcity of data poses significant challenges for accurately reconstructing high-quality images, which are essential for reliable diagnostic outcomes. In this research, we propose a diffusion transformer model (DTM) guided by joint compact prior (JCP) to enhance the reconstruction quality of low-dose PET imaging. In light of current research findings, we present a pioneering PET reconstruction model that integrates diffusion and transformer models for joint optimization. This model combines the powerful distribution mapping abilities of diffusion models with the capacity of transformers to capture long-range dependencies, offering significant advantages for low-dose PET reconstruction. Additionally, the incorporation of the lesion refining block and penalized weighted least squares (PWLS) enhance the recovery capability of lesion regions and preserves detail information, solving blurring problems in lesion areas and texture details of most deep learning frameworks. Experimental results demonstrate the effectiveness of DTM in enhancing image quality and preserving critical clinical information for low-dose PET scans. Our approach not only reduces radiation exposure risks but also provides a more reliable PET imaging tool for early disease detection and patient management.

Partitioned Hankel-based Diffusion Models for Few-shot Low-dose CT Reconstruction

Low-dose computed tomography (LDCT) plays a vital role in clinical applications by mitigating radiation risks. Nevertheless, reducing radiation doses significantly degrades image quality. Concurrently, common deep learning methods demand extensive data, posing concerns about privacy, cost, and time constraints. Consequently, we propose a few-shot low-dose CT reconstruction method using Partitioned Hankel-based Diffusion (PHD) models. During the prior learning stage, the projection data is first transformed into multiple partitioned Hankel matrices. Structured tensors are then extracted from these matrices to facilitate prior learning through multiple diffusion models. In the iterative reconstruction stage, an iterative stochastic differential equation solver is employed along with data consistency constraints to update the acquired projection data. Furthermore, penalized weighted least-squares and total variation techniques are introduced to enhance the resulting image quality. The results approximate those of normal-dose counterparts, validating PHD model as an effective and practical model for reducing artifacts and noise while preserving image quality.

DP-MDM: Detail-Preserving MR Reconstruction via Multiple Diffusion Models

Detail features of magnetic resonance images play a cru-cial role in accurate medical diagnosis and treatment, as they capture subtle changes that pose challenges for doc-tors when performing precise judgments. However, the widely utilized naive diffusion model has limitations, as it fails to accurately capture more intricate details. To en-hance the quality of MRI reconstruction, we propose a comprehensive detail-preserving reconstruction method using multiple diffusion models to extract structure and detail features in k-space domain instead of image do-main. Moreover, virtual binary modal masks are utilized to refine the range of values in k-space data through highly adaptive center windows, which allows the model to focus its attention more efficiently. Last but not least, an inverted pyramid structure is employed, where the top-down image information gradually decreases, ena-bling a cascade representation. The framework effective-ly represents multi-scale sampled data, taking into ac-count the sparsity of the inverted pyramid architecture, and utilizes cascade training data distribution to repre-sent multi-scale data. Through a step-by-step refinement approach, the method refines the approximation of de-tails. Finally, the proposed method was evaluated by con-ducting experiments on clinical and public datasets. The results demonstrate that the proposed method outper-forms other methods.

MSDiff: Multi-Scale Diffusion Model for Ultra-Sparse View CT Reconstruction

Computed Tomography (CT) technology reduces radiation haz-ards to the human body through sparse sampling, but fewer sampling angles pose challenges for image reconstruction. Score-based generative models are widely used in sparse-view CT re-construction, performance diminishes significantly with a sharp reduction in projection angles. Therefore, we propose an ultra-sparse view CT reconstruction method utilizing multi-scale dif-fusion models (MSDiff), designed to concentrate on the global distribution of information and facilitate the reconstruction of sparse views with local image characteristics. Specifically, the proposed model ingeniously integrates information from both comprehensive sampling and selectively sparse sampling tech-niques. Through precise adjustments in diffusion model, it is capable of extracting diverse noise distribution, furthering the understanding of the overall structure of images, and aiding the fully sampled model in recovering image information more effec-tively. By leveraging the inherent correlations within the projec-tion data, we have designed an equidistant mask, enabling the model to focus its attention more effectively. Experimental re-sults demonstrated that the multi-scale model approach signifi-cantly improved the quality of image reconstruction under ultra-sparse angles, with good generalization across various datasets.

Knowledge-driven deep learning for fast MR imaging: undersampled MR image reconstruction from supervised to un-supervised learning

Deep learning (DL) has emerged as a leading approach in accelerating MR imaging. It employs deep neural networks to extract knowledge from available datasets and then applies the trained networks to reconstruct accurate images from limited measurements. Unlike natural image restoration problems, MR imaging involves physics-based imaging processes, unique data properties, and diverse imaging tasks. This domain knowledge needs to be integrated with data-driven approaches. Our review will introduce the significant challenges faced by such knowledge-driven DL approaches in the context of fast MR imaging along with several notable solutions, which include learning neural networks and addressing different imaging application scenarios. The traits and trends of these techniques have also been given which have shifted from supervised learning to semi-supervised learning, and finally, to unsupervised learning methods. In addition, MR vendors' choices of DL reconstruction have been provided along with some discussions on open questions and future directions, which are critical for the reliable imaging systems.

AID-DTI: Accelerating High-fidelity Diffusion Tensor Imaging with Detail-Preserving Model-based Deep Learning

Deep learning has shown great potential in accelerating diffusion tensor imaging (DTI). Nevertheless, existing methods tend to suffer from Rician noise and detail loss in reconstructing the DTI-derived parametric maps especially when sparsely sampled q-space data are used. This paper proposes a novel method, AID-DTI (Accelerating hIgh fiDelity Diffusion Tensor Imaging), to facilitate fast and accurate DTI with only six measurements. AID-DTI is equipped with a newly designed Singular Value Decomposition (SVD)-based regularizer, which can effectively capture fine details while suppressing noise during network training. Experimental results on Human Connectome Project (HCP) data consistently demonstrate that the proposed method estimates DTI parameter maps with fine-grained details and outperforms three state-of-the-art methods both quantitatively and qualitatively.

Partition-based K-space Synthesis for Multi-contrast Parallel Imaging

Multi-contrast magnetic resonance imaging is a significant and essential medical imaging technique.However, multi-contrast imaging has longer acquisition time and is easy to cause motion artifacts. In particular, the acquisition time for a T2-weighted image is prolonged due to its longer repetition time (TR). On the contrary, T1-weighted image has a shorter TR. Therefore,utilizing complementary information across T1 and T2-weighted image is a way to decrease the overall imaging time. Previous T1-assisted T2 reconstruction methods have mostly focused on image domain using whole-based image fusion approaches. The image domain reconstruction method has the defects of high computational complexity and limited flexibility. To address this issue, we propose a novel multi-contrast imaging method called partition-based k-space synthesis (PKS) which can achieve super reconstruction quality of T2-weighted image by feature fusion. Concretely, we first decompose fully-sampled T1 k-space data and under-sampled T2 k-space data into two sub-data, separately. Then two new objects are constructed by combining the two sub-T1/T2 data. After that, the two new objects as the whole data to realize the reconstruction of T2-weighted image. Finally, the objective T2 is synthesized by extracting the sub-T2 data of each part. Experimental results showed that our combined technique can achieve comparable or better results than using traditional k-space parallel imaging(SAKE) that processes each contrast independently.

PET Tracer Conversion among Brain PET via Variable Augmented Invertible Network

Positron emission tomography (PET) serves as an essential tool for diagnosis of encephalopathy and brain science research. However, it suffers from the limited choice of tracers. Nowadays, with the wide application of PET imaging in neuropsychiatric treatment, 6-18F-fluoro-3, 4-dihydroxy-L-phenylalanine (DOPA) has been found to be more effective than 18F-labeled fluorine-2-deoxyglucose (FDG) in the field. Nevertheless, due to the complexity of its preparation and other limitations, DOPA is far less widely used than FDG. To address this issue, a tracer conversion invertible neural network (TC-INN) for image projection is developed to map FDG images to DOPA images through deep learning. More diagnostic information is obtained by generating PET images from FDG to DOPA. Specifically, the proposed TC-INN consists of two separate phases, one for training traceable data, the other for rebuilding new data. The reference DOPA PET image is used as a learning target for the corresponding network during the training process of tracer conversion. Meanwhile, the invertible network iteratively estimates the resultant DOPA PET data and compares it to the reference DOPA PET data. Notably, the reversible model employs variable enhancement technique to achieve better power generation. Moreover, image registration needs to be performed before training due to the angular deviation of the acquired FDG and DOPA data information. Experimental results exhibited excellent generation capability in mapping between FDG and DOPA, suggesting that PET tracer conversion has great potential in the case of limited tracer applications.

Synthetic CT Generation via Variant Invertible Network for All-digital Brain PET Attenuation Correction

Attenuation correction (AC) is essential for the generation of artifact-free and quantitatively accurate positron emission tomography (PET) images. However, AC of PET faces challenges including inter-scan motion and erroneous transformation of structural voxel-intensities to PET attenuation-correction factors. Nowadays, the problem of AC for quantitative PET have been solved to a large extent after the commercial availability of devices combining PET with computed tomography (CT). Meanwhile, considering the feasibility of a deep learning approach for PET AC without anatomical imaging, this paper develops a PET AC method, which uses deep learning to generate continuously valued CT images from non-attenuation corrected PET images for AC on brain PET imaging. Specifically, an invertible network combined with the variable augmentation strategy that can achieve the bidirectional inference processes is proposed for synthetic CT generation (IVNAC). To evaluate the performance of the proposed algorithm, we conducted a comprehensive study on a total of 1440 data from 37 clinical patients using comparative algorithms (such as Cycle-GAN and Pix2pix). Perceptual analysis and quantitative evaluations illustrate that the invertible network for PET AC outperforms other existing AC models, which demonstrates the potential of the proposed method and the feasibility of achieving brain PET AC without CT.

Stage-by-stage Wavelet Optimization Refinement Diffusion Model for Sparse-View CT Reconstruction

Diffusion models have emerged as potential tools to tackle the challenge of sparse-view CT reconstruction, displaying superior performance compared to conventional methods. Nevertheless, these prevailing diffusion models predominantly focus on the sinogram or image domains, which can lead to instability during model training, potentially culminating in convergence towards local minimal solutions. The wavelet trans-form serves to disentangle image contents and features into distinct frequency-component bands at varying scales, adeptly capturing diverse directional structures. Employing the Wavelet transform as a guiding sparsity prior significantly enhances the robustness of diffusion models. In this study, we present an innovative approach named the Stage-by-stage Wavelet Optimization Refinement Diffusion (SWORD) model for sparse-view CT reconstruction. Specifically, we establish a unified mathematical model integrating low-frequency and high-frequency generative models, achieving the solution with optimization procedure. Furthermore, we perform the low-frequency and high-frequency generative models on wavelet's decomposed components rather than sinogram or image domains, ensuring the stability of model training. Our method rooted in established optimization theory, comprising three distinct stages, including low-frequency generation, high-frequency refinement and domain transform. Our experimental results demonstrate that the proposed method outperforms existing state-of-the-art methods both quantitatively and qualitatively.