TimeMAE: Self-Supervised Representations of Time Series with Decoupled Masked Autoencoders

Enhancing the expressive capacity of deep learning-based time series models with self-supervised pre-training has become ever-increasingly prevalent in time series classification. Even though numerous efforts have been devoted to developing self-supervised models for time series data, we argue that the current methods are not sufficient to learn optimal time series representations due to solely unidirectional encoding over sparse point-wise input units. In this work, we propose TimeMAE, a novel self-supervised paradigm for learning transferrable time series representations based on transformer networks. The distinct characteristics of the TimeMAE lie in processing each time series into a sequence of non-overlapping sub-series via window-slicing partitioning, followed by random masking strategies over the semantic units of localized sub-series. Such a simple yet effective setting can help us achieve the goal of killing three birds with one stone, i.e., (1) learning enriched contextual representations of time series with a bidirectional encoding scheme; (2) increasing the information density of basic semantic units; (3) efficiently encoding representations of time series using transformer networks. Nevertheless, it is a non-trivial to perform reconstructing task over such a novel formulated modeling paradigm. To solve the discrepancy issue incurred by newly injected masked embeddings, we design a decoupled autoencoder architecture, which learns the representations of visible (unmasked) positions and masked ones with two different encoder modules, respectively. Furthermore, we construct two types of informative targets to accomplish the corresponding pretext tasks. One is to create a tokenizer module that assigns a codeword to each masked region, allowing the masked codeword classification (MCC) task to be completed effectively...

Backdoor Defense via Deconfounded Representation Learning

Deep neural networks (DNNs) are recently shown to be vulnerable to backdoor attacks, where attackers embed hidden backdoors in the DNN model by injecting a few poisoned examples into the training dataset. While extensive efforts have been made to detect and remove backdoors from backdoored DNNs, it is still not clear whether a backdoor-free clean model can be directly obtained from poisoned datasets. In this paper, we first construct a causal graph to model the generation process of poisoned data and find that the backdoor attack acts as the confounder, which brings spurious associations between the input images and target labels, making the model predictions less reliable. Inspired by the causal understanding, we propose the Causality-inspired Backdoor Defense (CBD), to learn deconfounded representations for reliable classification. Specifically, a backdoored model is intentionally trained to capture the confounding effects. The other clean model dedicates to capturing the desired causal effects by minimizing the mutual information with the confounding representations from the backdoored model and employing a sample-wise re-weighting scheme. Extensive experiments on multiple benchmark datasets against 6 state-of-the-art attacks verify that our proposed defense method is effective in reducing backdoor threats while maintaining high accuracy in predicting benign samples. Further analysis shows that CBD can also resist potential adaptive attacks. The code is available at \url{https://github.com/zaixizhang/CBD}.

Retrieved Sequence Augmentation for Protein Representation Learning

Protein language models have excelled in a variety of tasks, ranging from structure prediction to protein engineering. However, proteins are highly diverse in functions and structures, and current state-of-the-art models including the latest version of AlphaFold rely on Multiple Sequence Alignments (MSA) to feed in the evolutionary knowledge. Despite their success, heavy computational overheads, as well as the de novo and orphan proteins remain great challenges in protein representation learning. In this work, we show that MSAaugmented models inherently belong to retrievalaugmented methods. Motivated by this finding, we introduce Retrieved Sequence Augmentation(RSA) for protein representation learning without additional alignment or pre-processing. RSA links query protein sequences to a set of sequences with similar structures or properties in the database and combines these sequences for downstream prediction. We show that protein language models benefit from the retrieval enhancement on both structure prediction and property prediction tasks, with a 5% improvement on MSA Transformer on average while being 373 times faster. In addition, we show that our model can transfer to new protein domains better and outperforms MSA Transformer on de novo protein prediction. Our study fills a much-encountered gap in protein prediction and brings us a step closer to demystifying the domain knowledge needed to understand protein sequences. Code is available on https://github.com/HKUNLP/RSA.

Deep Vision in Analysis and Recognition of Radar Data: Achievements, Advancements and Challenges

Radars are widely used to obtain echo information for effective prediction, such as precipitation nowcasting. In this paper, recent relevant scientific investigation and practical efforts using Deep Learning (DL) models for weather radar data analysis and pattern recognition have been reviewed; particularly, in the fields of beam blockage correction, radar echo extrapolation, and precipitation nowcast. Compared to traditional approaches, present DL methods depict better performance and convenience but suffer from stability and generalization. In addition to recent achievements, the latest advancements and existing challenges are also presented and discussed in this paper, trying to lead to reasonable potentials and trends in this highly-concerned field.

FormerTime: Hierarchical Multi-Scale Representations for Multivariate Time Series Classification

Deep learning-based algorithms, e.g., convolutional networks, have significantly facilitated multivariate time series classification (MTSC) task. Nevertheless, they suffer from the limitation in modeling long-range dependence due to the nature of convolution operations. Recent advancements have shown the potential of transformers to capture long-range dependence. However, it would incur severe issues, such as fixed scale representations, temporal-invariant and quadratic time complexity, with transformers directly applicable to the MTSC task because of the distinct properties of time series data. To tackle these issues, we propose FormerTime, an hierarchical representation model for improving the classification capacity for the MTSC task. In the proposed FormerTime, we employ a hierarchical network architecture to perform multi-scale feature maps. Besides, a novel transformer encoder is further designed, in which an efficient temporal reduction attention layer and a well-informed contextual positional encoding generating strategy are developed. To sum up, FormerTime exhibits three aspects of merits: (1) learning hierarchical multi-scale representations from time series data, (2) inheriting the strength of both transformers and convolutional networks, and (3) tacking the efficiency challenges incurred by the self-attention mechanism. Extensive experiments performed on $10$ publicly available datasets from UEA archive verify the superiorities of the FormerTime compared to previous competitive baselines.

Search-Engine-augmented Dialogue Response Generation with Cheaply Supervised Query Production

Knowledge-aided dialogue response generation aims at augmenting chatbots with relevant external knowledge in the hope of generating more informative responses. The majority of previous work assumes that the relevant knowledge is given as input or retrieved from a static pool of knowledge. However, this assumption violates the real-world situation, where knowledge is continually updated and a chatbot has to dynamically retrieve useful knowledge. We propose a dialogue model that can access the vast and dynamic information from any search engine for response generation. As the core module, a query producer is used to generate queries from a dialogue context to interact with a search engine. We design a training algorithm using cheap noisy supervision for the query producer, where the signals are obtained by comparing retrieved articles with the next dialogue response. As the result, the query producer is adjusted without any human annotation of gold queries, making it easily transferable to other domains and search engines. Experiments show that our query producer can achieve R@1 and R@5 rates of 62.4% and 74.8% for retrieving gold knowledge, and the overall model generates better responses over strong knowledge-aided baselines using BART and other typical systems.

Learning by Applying: A General Framework for Mathematical Reasoning via Enhancing Explicit Knowledge Learning

Mathematical reasoning is one of the crucial abilities of general artificial intelligence, which requires machines to master mathematical logic and knowledge from solving problems. However, existing approaches are not transparent (thus not interpretable) in terms of what knowledge has been learned and applied in the reasoning process. In this paper, we propose a general Learning by Applying (LeAp) framework to enhance existing models (backbones) in a principled way by explicit knowledge learning. In LeAp, we perform knowledge learning in a novel problem-knowledge-expression paradigm, with a Knowledge Encoder to acquire knowledge from problem data and a Knowledge Decoder to apply knowledge for expression reasoning. The learned mathematical knowledge, including word-word relations and word-operator relations, forms an explicit knowledge graph, which bridges the knowledge "learning" and "applying" organically. Moreover, for problem solving, we design a semantics-enhanced module and a reasoning-enhanced module that apply knowledge to improve the problem comprehension and symbol reasoning abilities of any backbone, respectively. We theoretically prove the superiority of LeAp's autonomous learning mechanism. Experiments on three real-world datasets show that LeAp improves all backbones' performances, learns accurate knowledge, and achieves a more interpretable reasoning process.

ShapeWordNet: An Interpretable Shapelet Neural Network for Physiological Signal Classification

Physiological signals are high-dimensional time series of great practical values in medical and healthcare applications. However, previous works on its classification fail to obtain promising results due to the intractable data characteristics and the severe label sparsity issues. In this paper, we try to address these challenges by proposing a more effective and interpretable scheme tailored for the physiological signal classification task. Specifically, we exploit the time series shapelets to extract prominent local patterns and perform interpretable sequence discretization to distill the whole-series information. By doing so, the long and continuous raw signals are compressed into short and discrete token sequences, where both local patterns and global contexts are well preserved. Moreover, to alleviate the label sparsity issue, a multi-scale transformation strategy is adaptively designed to augment data and a cross-scale contrastive learning mechanism is accordingly devised to guide the model training. We name our method as ShapeWordNet and conduct extensive experiments on three real-world datasets to investigate its effectiveness. Comparative results show that our proposed scheme remarkably outperforms four categories of cutting-edge approaches. Visualization analysis further witnesses the good interpretability of the sequence discretization idea based on shapelets.

A Novel Approach for Auto-Formulation of Optimization Problems

In the Natural Language for Optimization (NL4Opt) NeurIPS 2022 competition, competitors focus on improving the accessibility and usability of optimization solvers, with the aim of subtask 1: recognizing the semantic entities that correspond to the components of the optimization problem; subtask 2: generating formulations for the optimization problem. In this paper, we present the solution of our team. First, we treat subtask 1 as a named entity recognition (NER) problem with the solution pipeline including pre-processing methods, adversarial training, post-processing methods and ensemble learning. Besides, we treat subtask 2 as a generation problem with the solution pipeline including specially designed prompts, adversarial training, post-processing methods and ensemble learning. Our proposed methods have achieved the F1-score of 0.931 in subtask 1 and the accuracy of 0.867 in subtask 2, which won the fourth and third places respectively in this competition. Our code is available at https://github.com/bigdata-ustc/nl4opt.