Quiver: Supporting GPUs for Low-Latency, High-Throughput GNN Serving with Workload Awareness

Systems for serving inference requests on graph neural networks (GNN) must combine low latency with high throughout, but they face irregular computation due to skew in the number of sampled graph nodes and aggregated GNN features. This makes it challenging to exploit GPUs effectively: using GPUs to sample only a few graph nodes yields lower performance than CPU-based sampling; and aggregating many features exhibits high data movement costs between GPUs and CPUs. Therefore, current GNN serving systems use CPUs for graph sampling and feature aggregation, limiting throughput. We describe Quiver, a distributed GPU-based GNN serving system with low-latency and high-throughput. Quiver's key idea is to exploit workload metrics for predicting the irregular computation of GNN requests, and governing the use of GPUs for graph sampling and feature aggregation: (1) for graph sampling, Quiver calculates the probabilistic sampled graph size, a metric that predicts the degree of parallelism in graph sampling. Quiver uses this metric to assign sampling tasks to GPUs only when the performance gains surpass CPU-based sampling; and (2) for feature aggregation, Quiver relies on the feature access probability to decide which features to partition and replicate across a distributed GPU NUMA topology. We show that Quiver achieves up to 35 times lower latency with an 8 times higher throughput compared to state-of-the-art GNN approaches (DGL and PyG).

Structure Enhanced Graph Neural Networks for Link Prediction

Graph Neural Networks (GNNs) have shown promising results in various tasks, among which link prediction is an important one. GNN models usually follow a node-centric message passing procedure that aggregates the neighborhood information to the central node recursively. Following this paradigm, features of nodes are passed through edges without caring about where the nodes are located and which role they played. However, the neglected topological information is shown to be valuable for link prediction tasks. In this paper, we propose Structure Enhanced Graph neural network (SEG) for link prediction. SEG introduces the path labeling method to capture surrounding topological information of target nodes and then incorporates the structure into an ordinary GNN model. By jointly training the structure encoder and deep GNN model, SEG fuses topological structures and node features to take full advantage of graph information. Experiments on the OGB link prediction datasets demonstrate that SEG achieves state-of-the-art results among all three public datasets.