Signal Intensity-weighted coordinate channels improve learning stability and generalisation in 1D and 2D CNNs in localisation tasks on biomedical signals

Localisation tasks in biomedical data often require models to learn meaningful spatial or temporal relationships from signals with complex intensity distributions. A common strategy, exemplified by CoordConv layers, is to append coordinate channels to convolutional inputs, enabling networks to learn absolute positions. In this work, we propose a signal intensity-weighted coordinate representation that replaces the pure coordinate channels with channels scaled by local signal intensity. This modification embeds an intensity-position coupling directly in the input representation, introducing a simple and modality-agnostic inductive bias. We evaluate the approach on two distinct localisation problems: (i) predicting the time of morphological transition in 20-second, two-lead ECG signals, and (ii) regressing the coordinates of nuclear centres in cytological images from the SiPaKMeD dataset. In both cases, the proposed representation yields faster convergence and higher generalisation performance relative to conventional coordinate-channel approaches, demonstrating its effectiveness across both one-dimensional and two-dimensional biomedical signals.

Robust Alignment of the Human Embryo in 3D Ultrasound using PCA and an Ensemble of Heuristic, Atlas-based and Learning-based Classifiers Evaluated on the Rotterdam Periconceptional Cohort

Standardized alignment of the embryo in three-dimensional (3D) ultrasound images aids prenatal growth monitoring by facilitating standard plane detection, improving visualization of landmarks and accentuating differences between different scans. In this work, we propose an automated method for standardizing this alignment. Given a segmentation mask of the embryo, Principal Component Analysis (PCA) is applied to the mask extracting the embryo's principal axes, from which four candidate orientations are derived. The candidate in standard orientation is selected using one of three strategies: a heuristic based on Pearson's correlation assessing shape, image matching to an atlas through normalized cross-correlation, and a Random Forest classifier. We tested our method on 2166 images longitudinally acquired 3D ultrasound scans from 1043 pregnancies from the Rotterdam Periconceptional Cohort, ranging from 7+0 to 12+6 weeks of gestational age. In 99.0% of images, PCA correctly extracted the principal axes of the embryo. The correct candidate was selected by the Pearson Heuristic, Atlas-based and Random Forest in 97.4%, 95.8%, and 98.4% of images, respectively. A Majority Vote of these selection methods resulted in an accuracy of 98.5%. The high accuracy of this pipeline enables consistent embryonic alignment in the first trimester, enabling scalable analysis in both clinical and research settings. The code is publicly available at: https://gitlab.com/radiology/prenatal-image-analysis/pca-3d-alignment.

Generalizing Shape-from-Template to Topological Changes

Reconstructing the surfaces of deformable objects from correspondences between a 3D template and a 2D image is well studied under Shape-from-Template (SfT) methods; however, existing approaches break down when topological changes accompany the deformation. We propose a principled extension of SfT that enables reconstruction in the presence of such changes. Our approach is initialized with a classical SfT solution and iteratively adapts the template by partitioning its spatial domain so as to minimize an energy functional that jointly encodes physical plausibility and reprojection consistency. We demonstrate that the method robustly captures a wide range of practically relevant topological events including tears and cuts on bounded 2D surfaces, thereby establishing the first general framework for topological-change-aware SfT. Experiments on both synthetic and real data confirm that our approach consistently outperforms baseline methods.

Seeing What You Say: Expressive Image Generation from Speech

This paper proposes VoxStudio, the first unified and end-to-end speech-to-image model that generates expressive images directly from spoken descriptions by jointly aligning linguistic and paralinguistic information. At its core is a speech information bottleneck (SIB) module, which compresses raw speech into compact semantic tokens, preserving prosody and emotional nuance. By operating directly on these tokens, VoxStudio eliminates the need for an additional speech-to-text system, which often ignores the hidden details beyond text, e.g., tone or emotion. We also release VoxEmoset, a large-scale paired emotional speech-image dataset built via an advanced TTS engine to affordably generate richly expressive utterances. Comprehensive experiments on the SpokenCOCO, Flickr8kAudio, and VoxEmoset benchmarks demonstrate the feasibility of our method and highlight key challenges, including emotional consistency and linguistic ambiguity, paving the way for future research.

Computational Imaging Meets LLMs: Zero-Shot IDH Mutation Prediction in Brain Gliomas

We present a framework that combines Large Language Models with computational image analytics for non-invasive, zero-shot prediction of IDH mutation status in brain gliomas. For each subject, coregistered multi-parametric MRI scans and multi-class tumor segmentation maps were processed to extract interpretable semantic (visual) attributes and quantitative features, serialized in a standardized JSON file, and used to query GPT 4o and GPT 5 without fine-tuning. We evaluated this framework on six publicly available datasets (N = 1427) and results showcased high accuracy and balanced classification performance across heterogeneous cohorts, even in the absence of manual annotations. GPT 5 outperformed GPT 4o in context-driven phenotype interpretation. Volumetric features emerged as the most important predictors, supplemented by subtype-specific imaging markers and clinical information. Our results demonstrate the potential of integrating LLM-based reasoning with computational image analytics for precise, non-invasive tumor genotyping, advancing diagnostic strategies in neuro-oncology. The code is available at https://github.com/ATPLab-LUMS/CIM-LLM.

Evaluating Perspectival Biases in Cross-Modal Retrieval

Multimodal retrieval systems are expected to operate in a semantic space, agnostic to the language or cultural origin of the query. In practice, however, retrieval outcomes systematically reflect perspectival biases: deviations shaped by linguistic prevalence and cultural associations. We study two such biases. First, prevalence bias refers to the tendency to favor entries from prevalent languages over semantically faithful entries in image-to-text retrieval. Second, association bias refers to the tendency to favor images culturally associated with the query over semantically correct ones in text-to-image retrieval. Results show that explicit alignment is a more effective strategy for mitigating prevalence bias. However, association bias remains a distinct and more challenging problem. These findings suggest that achieving truly equitable multimodal systems requires targeted strategies beyond simple data scaling and that bias arising from cultural association may be treated as a more challenging problem than one arising from linguistic prevalence.

Image Hashing via Cross-View Code Alignment in the Age of Foundation Models

Efficient large-scale retrieval requires representations that are both compact and discriminative. Foundation models provide powerful visual and multimodal embeddings, but nearest neighbor search in these high-dimensional spaces is computationally expensive. Hashing offers an efficient alternative by enabling fast Hamming distance search with binary codes, yet existing approaches often rely on complex pipelines, multi-term objectives, designs specialized for a single learning paradigm, and long training times. We introduce CroVCA (Cross-View Code Alignment), a simple and unified principle for learning binary codes that remain consistent across semantically aligned views. A single binary cross-entropy loss enforces alignment, while coding-rate maximization serves as an anti-collapse regularizer to promote balanced and diverse codes. To implement this, we design HashCoder, a lightweight MLP hashing network with a final batch normalization layer to enforce balanced codes. HashCoder can be used as a probing head on frozen embeddings or to adapt encoders efficiently via LoRA fine-tuning. Across benchmarks, CroVCA achieves state-of-the-art results in just 5 training epochs. At 16 bits, it particularly well-for instance, unsupervised hashing on COCO completes in under 2 minutes and supervised hashing on ImageNet100 in about 3 minutes on a single GPU. These results highlight CroVCA's efficiency, adaptability, and broad applicability.

Phased DMD: Few-step Distribution Matching Distillation via Score Matching within Subintervals

Distribution Matching Distillation (DMD) distills score-based generative models into efficient one-step generators, without requiring a one-to-one correspondence with the sampling trajectories of their teachers. However, limited model capacity causes one-step distilled models underperform on complex generative tasks, e.g., synthesizing intricate object motions in text-to-video generation. Directly extending DMD to multi-step distillation increases memory usage and computational depth, leading to instability and reduced efficiency. While prior works propose stochastic gradient truncation as a potential solution, we observe that it substantially reduces the generation diversity of multi-step distilled models, bringing it down to the level of their one-step counterparts. To address these limitations, we propose Phased DMD, a multi-step distillation framework that bridges the idea of phase-wise distillation with Mixture-of-Experts (MoE), reducing learning difficulty while enhancing model capacity. Phased DMD is built upon two key ideas: progressive distribution matching and score matching within subintervals. First, our model divides the SNR range into subintervals, progressively refining the model to higher SNR levels, to better capture complex distributions. Next, to ensure the training objective within each subinterval is accurate, we have conducted rigorous mathematical derivations. We validate Phased DMD by distilling state-of-the-art image and video generation models, including Qwen-Image (20B parameters) and Wan2.2 (28B parameters). Experimental results demonstrate that Phased DMD preserves output diversity better than DMD while retaining key generative capabilities. We will release our code and models.

PETAR: Localized Findings Generation with Mask-Aware Vision-Language Modeling for PET Automated Reporting

Recent advances in vision-language models (VLMs) have enabled impressive multimodal reasoning, yet most medical applications remain limited to 2D imaging. In this work, we extend VLMs to 3D positron emission tomography and computed tomography (PET/CT), a domain characterized by large volumetric data, small and dispersed lesions, and lengthy radiology reports. We introduce a large-scale dataset comprising over 11,000 lesion-level descriptions paired with 3D segmentations from more than 5,000 PET/CT exams, extracted via a hybrid rule-based and large language model (LLM) pipeline. Building upon this dataset, we propose PETAR-4B, a 3D mask-aware vision-language model that integrates PET, CT, and lesion contours for spatially grounded report generation. PETAR bridges global contextual reasoning with fine-grained lesion awareness, producing clinically coherent and localized findings. Comprehensive automated and human evaluations demonstrate that PETAR substantially improves PET/CT report generation quality, advancing 3D medical vision-language understanding.

Vision Transformer for Robust Occluded Person Reidentification in Complex Surveillance Scenes

Person re-identification (ReID) in surveillance is challenged by occlusion, viewpoint distortion, and poor image quality. Most existing methods rely on complex modules or perform well only on clear frontal images. We propose Sh-ViT (Shuffling Vision Transformer), a lightweight and robust model for occluded person ReID. Built on ViT-Base, Sh-ViT introduces three components: First, a Shuffle module in the final Transformer layer to break spatial correlations and enhance robustness to occlusion and blur; Second, scenario-adapted augmentation (geometric transforms, erasing, blur, and color adjustment) to simulate surveillance conditions; Third, DeiT-based knowledge distillation to improve learning with limited labels.To support real-world evaluation, we construct the MyTT dataset, containing over 10,000 pedestrians and 30,000+ images from base station inspections, with frequent equipment occlusion and camera variations. Experiments show that Sh-ViT achieves 83.2% Rank-1 and 80.1% mAP on MyTT, outperforming CNN and ViT baselines, and 94.6% Rank-1 and 87.5% mAP on Market1501, surpassing state-of-the-art methods.In summary, Sh-ViT improves robustness to occlusion and blur without external modules, offering a practical solution for surveillance-based personnel monitoring.