Identifiable Latent Neural Causal Models

Causal representation learning seeks to uncover latent, high-level causal representations from low-level observed data. It is particularly good at predictions under unseen distribution shifts, because these shifts can generally be interpreted as consequences of interventions. Hence leveraging {seen} distribution shifts becomes a natural strategy to help identifying causal representations, which in turn benefits predictions where distributions are previously {unseen}. Determining the types (or conditions) of such distribution shifts that do contribute to the identifiability of causal representations is critical. This work establishes a {sufficient} and {necessary} condition characterizing the types of distribution shifts for identifiability in the context of latent additive noise models. Furthermore, we present partial identifiability results when only a portion of distribution shifts meets the condition. In addition, we extend our findings to latent post-nonlinear causal models. We translate our findings into a practical algorithm, allowing for the acquisition of reliable latent causal representations. Our algorithm, guided by our underlying theory, has demonstrated outstanding performance across a diverse range of synthetic and real-world datasets. The empirical observations align closely with the theoretical findings, affirming the robustness and effectiveness of our approach.

Local Causal Discovery with Linear non-Gaussian Cyclic Models

Local causal discovery is of great practical significance, as there are often situations where the discovery of the global causal structure is unnecessary, and the interest lies solely on a single target variable. Most existing local methods utilize conditional independence relations, providing only a partially directed graph, and assume acyclicity for the ground-truth structure, even though real-world scenarios often involve cycles like feedback mechanisms. In this work, we present a general, unified local causal discovery method with linear non-Gaussian models, whether they are cyclic or acyclic. We extend the application of independent component analysis from the global context to independent subspace analysis, enabling the exact identification of the equivalent local directed structures and causal strengths from the Markov blanket of the target variable. We also propose an alternative regression-based method in the particular acyclic scenarios. Our identifiability results are empirically validated using both synthetic and real-world datasets.

Gene Regulatory Network Inference in the Presence of Dropouts: a Causal View

Gene regulatory network inference (GRNI) is a challenging problem, particularly owing to the presence of zeros in single-cell RNA sequencing data: some are biological zeros representing no gene expression, while some others are technical zeros arising from the sequencing procedure (aka dropouts), which may bias GRNI by distorting the joint distribution of the measured gene expressions. Existing approaches typically handle dropout error via imputation, which may introduce spurious relations as the true joint distribution is generally unidentifiable. To tackle this issue, we introduce a causal graphical model to characterize the dropout mechanism, namely, Causal Dropout Model. We provide a simple yet effective theoretical result: interestingly, the conditional independence (CI) relations in the data with dropouts, after deleting the samples with zero values (regardless if technical or not) for the conditioned variables, are asymptotically identical to the CI relations in the original data without dropouts. This particular test-wise deletion procedure, in which we perform CI tests on the samples without zeros for the conditioned variables, can be seamlessly integrated with existing structure learning approaches including constraint-based and greedy score-based methods, thus giving rise to a principled framework for GRNI in the presence of dropouts. We further show that the causal dropout model can be validated from data, and many existing statistical models to handle dropouts fit into our model as specific parametric instances. Empirical evaluation on synthetic, curated, and real-world experimental transcriptomic data comprehensively demonstrate the efficacy of our method.

Steering LLMs Towards Unbiased Responses: A Causality-Guided Debiasing Framework

Large language models (LLMs) can easily generate biased and discriminative responses. As LLMs tap into consequential decision-making (e.g., hiring and healthcare), it is of crucial importance to develop strategies to mitigate these biases. This paper focuses on social bias, tackling the association between demographic information and LLM outputs. We propose a causality-guided debiasing framework that utilizes causal understandings of (1) the data-generating process of the training corpus fed to LLMs, and (2) the internal reasoning process of LLM inference, to guide the design of prompts for debiasing LLM outputs through selection mechanisms. Our framework unifies existing de-biasing prompting approaches such as inhibitive instructions and in-context contrastive examples, and sheds light on new ways of debiasing by encouraging bias-free reasoning. Our strong empirical performance on real-world datasets demonstrates that our framework provides principled guidelines on debiasing LLM outputs even with only the black-box access.

Confidence Matters: Revisiting Intrinsic Self-Correction Capabilities of Large Language Models

The recent success of Large Language Models (LLMs) has catalyzed an increasing interest in their self-correction capabilities. This paper presents a comprehensive investigation into the intrinsic self-correction of LLMs, attempting to address the ongoing debate about its feasibility. Our research has identified an important latent factor - the "confidence" of LLMs - during the self-correction process. Overlooking this factor may cause the models to over-criticize themselves, resulting in unreliable conclusions regarding the efficacy of self-correction. We have experimentally observed that LLMs possess the capability to understand the "confidence" in their own responses. It motivates us to develop an "If-or-Else" (IoE) prompting framework, designed to guide LLMs in assessing their own "confidence", facilitating intrinsic self-corrections. We conduct extensive experiments and demonstrate that our IoE-based Prompt can achieve a consistent improvement regarding the accuracy of self-corrected responses over the initial answers. Our study not only sheds light on the underlying factors affecting self-correction in LLMs, but also introduces a practical framework that utilizes the IoE prompting principle to efficiently improve self-correction capabilities with "confidence". The code is available at https://github.com/MBZUAI-CLeaR/IoE-Prompting.git.

Federated Causal Discovery from Heterogeneous Data

Conventional causal discovery methods rely on centralized data, which is inconsistent with the decentralized nature of data in many real-world situations. This discrepancy has motivated the development of federated causal discovery (FCD) approaches. However, existing FCD methods may be limited by their potentially restrictive assumptions of identifiable functional causal models or homogeneous data distributions, narrowing their applicability in diverse scenarios. In this paper, we propose a novel FCD method attempting to accommodate arbitrary causal models and heterogeneous data. We first utilize a surrogate variable corresponding to the client index to account for the data heterogeneity across different clients. We then develop a federated conditional independence test (FCIT) for causal skeleton discovery and establish a federated independent change principle (FICP) to determine causal directions. These approaches involve constructing summary statistics as a proxy of the raw data to protect data privacy. Owing to the nonparametric properties, FCIT and FICP make no assumption about particular functional forms, thereby facilitating the handling of arbitrary causal models. We conduct extensive experiments on synthetic and real datasets to show the efficacy of our method. The code is available at https://github.com/lokali/FedCDH.git.

Counterfactual Generation with Identifiability Guarantees

Counterfactual generation lies at the core of various machine learning tasks, including image translation and controllable text generation. This generation process usually requires the identification of the disentangled latent representations, such as content and style, that underlie the observed data. However, it becomes more challenging when faced with a scarcity of paired data and labeling information. Existing disentangled methods crucially rely on oversimplified assumptions, such as assuming independent content and style variables, to identify the latent variables, even though such assumptions may not hold for complex data distributions. For instance, food reviews tend to involve words like tasty, whereas movie reviews commonly contain words such as thrilling for the same positive sentiment. This problem is exacerbated when data are sampled from multiple domains since the dependence between content and style may vary significantly over domains. In this work, we tackle the domain-varying dependence between the content and the style variables inherent in the counterfactual generation task. We provide identification guarantees for such latent-variable models by leveraging the relative sparsity of the influences from different latent variables. Our theoretical insights enable the development of a doMain AdapTive counTerfactual gEneration model, called (MATTE). Our theoretically grounded framework achieves state-of-the-art performance in unsupervised style transfer tasks, where neither paired data nor style labels are utilized, across four large-scale datasets. Code is available at https://github.com/hanqi-qi/Matte.git

When and How: Learning Identifiable Latent States for Nonstationary Time Series Forecasting

Temporal distribution shifts are ubiquitous in time series data. One of the most popular methods assumes that the temporal distribution shift occurs uniformly to disentangle the stationary and nonstationary dependencies. But this assumption is difficult to meet, as we do not know when the distribution shifts occur. To solve this problem, we propose to learn IDentifiable latEnt stAtes (IDEA) to detect when the distribution shifts occur. Beyond that, we further disentangle the stationary and nonstationary latent states via sufficient observation assumption to learn how the latent states change. Specifically, we formalize the causal process with environment-irrelated stationary and environment-related nonstationary variables. Under mild conditions, we show that latent environments and stationary/nonstationary variables are identifiable. Based on these theories, we devise the IDEA model, which incorporates an autoregressive hidden Markov model to estimate latent environments and modular prior networks to identify latent states. The IDEA model outperforms several latest nonstationary forecasting methods on various benchmark datasets, highlighting its advantages in real-world scenarios.

Neighborhood-Enhanced Supervised Contrastive Learning for Collaborative Filtering

While effective in recommendation tasks, collaborative filtering (CF) techniques face the challenge of data sparsity. Researchers have begun leveraging contrastive learning to introduce additional self-supervised signals to address this. However, this approach often unintentionally distances the target user/item from their collaborative neighbors, limiting its efficacy. In response, we propose a solution that treats the collaborative neighbors of the anchor node as positive samples within the final objective loss function. This paper focuses on developing two unique supervised contrastive loss functions that effectively combine supervision signals with contrastive loss. We analyze our proposed loss functions through the gradient lens, demonstrating that different positive samples simultaneously influence updating the anchor node's embeddings. These samples' impact depends on their similarities to the anchor node and the negative samples. Using the graph-based collaborative filtering model as our backbone and following the same data augmentation methods as the existing contrastive learning model SGL, we effectively enhance the performance of the recommendation model. Our proposed Neighborhood-Enhanced Supervised Contrastive Loss (NESCL) model substitutes the contrastive loss function in SGL with our novel loss function, showing marked performance improvement. On three real-world datasets, Yelp2018, Gowalla, and Amazon-Book, our model surpasses the original SGL by 10.09%, 7.09%, and 35.36% on NDCG@20, respectively.

Revealing Multimodal Contrastive Representation Learning through Latent Partial Causal Models

Multimodal contrastive representation learning methods have proven successful across a range of domains, partly due to their ability to generate meaningful shared representations of complex phenomena. To enhance the depth of analysis and understanding of these acquired representations, we introduce a unified causal model specifically designed for multimodal data. By examining this model, we show that multimodal contrastive representation learning excels at identifying latent coupled variables within the proposed unified model, up to linear or permutation transformations resulting from different assumptions. Our findings illuminate the potential of pre-trained multimodal models, eg, CLIP, in learning disentangled representations through a surprisingly simple yet highly effective tool: linear independent component analysis. Experiments demonstrate the robustness of our findings, even when the assumptions are violated, and validate the effectiveness of the proposed method in learning disentangled representations.