Digital Twin Brain: a simulation and assimilation platform for whole human brain

In this work, we present a computing platform named digital twin brain (DTB) that can simulate spiking neuronal networks of the whole human brain scale and more importantly, a personalized biological brain structure. In comparison to most brain simulations with a homogeneous global structure, we highlight that the sparseness, couplingness and heterogeneity in the sMRI, DTI and PET data of the brain has an essential impact on the efficiency of brain simulation, which is proved from the scaling experiments that the DTB of human brain simulation is communication-intensive and memory-access intensive computing systems rather than computation-intensive. We utilize a number of optimization techniques to balance and integrate the computation loads and communication traffics from the heterogeneous biological structure to the general GPU-based HPC and achieve leading simulation performance for the whole human brain-scaled spiking neuronal networks. On the other hand, the biological structure, equipped with a mesoscopic data assimilation, enables the DTB to investigate brain cognitive function by a reverse-engineering method, which is demonstrated by a digital experiment of visual evaluation on the DTB. Furthermore, we believe that the developing DTB will be a promising powerful platform for a large of research orients including brain-inspiredintelligence, rain disease medicine and brain-machine interface.

Probabilistic Computation with Emerging Covariance: Towards Efficient Uncertainty Quantification

Building robust, interpretable, and secure artificial intelligence system requires some degree of quantifying and representing uncertainty via a probabilistic perspective, as it allows to mimic human cognitive abilities. However, probabilistic computation presents significant challenges due to its inherent complexity. In this paper, we develop an efficient and interpretable probabilistic computation framework by truncating the probabilistic representation up to its first two moments, i.e., mean and covariance. We instantiate the framework by training a deterministic surrogate of a stochastic network that learns the complex probabilistic representation via combinations of simple activations, encapsulating the non-linearities coupling of the mean and covariance. We show that when the mean is supervised for optimizing the task objective, the unsupervised covariance spontaneously emerging from the non-linear coupling with the mean faithfully captures the uncertainty associated with model predictions. Our research highlights the inherent computability and simplicity of probabilistic computation, enabling its wider application in large-scale settings.

Toward spike-based stochastic neural computing

Inspired by the highly irregular spiking activity of cortical neurons, stochastic neural computing is an attractive theory for explaining the operating principles of the brain and the ability to represent uncertainty by intelligent agents. However, computing and learning with high-dimensional joint probability distributions of spiking neural activity across large populations of neurons present as a major challenge. To overcome this, we develop a novel moment embedding approach to enable gradient-based learning in spiking neural networks accounting for the propagation of correlated neural variability. We show under the supervised learning setting a spiking neural network trained this way is able to learn the task while simultaneously minimizing uncertainty, and further demonstrate its application to neuromorphic hardware. Built on the principle of spike-based stochastic neural computing, the proposed method opens up new opportunities for developing machine intelligence capable of computing uncertainty and for designing unconventional computing architectures.

Semantic Neural Decoding via Cross-Modal Generation

Semantic neural decoding aims to elucidate the cognitive processes of the human brain by reconstructing observed images from brain recordings. Although recent works have utilized deep generative models to generate images conditioned on fMRI signals, achieving high-quality generation with consistent semantics has proven to be a formidable challenge. To address this issue, we propose an end-to-end framework, SemanSig, which directly encodes fMRI signals and extracts semantic information. SemanSig leverages a deep generative model to decode the semantic information into high-quality images. To enhance the effectiveness of our framework, we use the ImageNet class prototype space as the internal representation space of fMRI signals, thereby reducing signal redundancy and learning difficulty. Consequently, this forms a semantic-rich and visually-friendly internal representation for generative models to decode. Notably, SemanSig does not require pre-training on a large fMRI dataset, and performs remarkably well when trained from scratch, even when the fMRI signal is limited. Our experimental results validate the effectiveness of SemanSig in achieving high-quality image generation with consistent semantics.

Preconditioned Score-based Generative Models

Score-based generative models (SGMs) have recently emerged as a promising class of generative models. However, a fundamental limitation is that their sampling process is slow due to a need for many (\eg, $2000$) iterations of sequential computations. An intuitive acceleration method is to reduce the sampling iterations which however causes severe performance degradation. We assault this problem to the ill-conditioned issues of the Langevin dynamics and reverse diffusion in the sampling process. Under this insight, we propose a model-agnostic {\bf\em preconditioned diffusion sampling} (PDS) method that leverages matrix preconditioning to alleviate the aforementioned problem. PDS alters the sampling process of a vanilla SGM at marginal extra computation cost, and without model retraining. Theoretically, we prove that PDS preserves the output distribution of the SGM, no risk of inducing systematical bias to the original sampling process. We further theoretically reveal a relation between the parameter of PDS and the sampling iterations,easing the parameter estimation under varying sampling iterations. Extensive experiments on various image datasets with a variety of resolutions and diversity validate that our PDS consistently accelerates off-the-shelf SGMs whilst maintaining the synthesis quality. In particular, PDS can accelerate by up to $29\times$ on more challenging high resolution (1024$\times$1024) image generation. Compared with the latest generative models (\eg, CLD-SGM, DDIM, and Analytic-DDIM), PDS can achieve the best sampling quality on CIFAR-10 at a FID score of 1.99. Our code is made publicly available to foster any further research https://github.com/fudan-zvg/PDS.

Rethinking Precision of Pseudo Label: Test-Time Adaptation via Complementary Learning

In this work, we propose a novel complementary learning approach to enhance test-time adaptation (TTA), which has been proven to exhibit good performance on testing data with distribution shifts such as corruptions. In test-time adaptation tasks, information from the source domain is typically unavailable and the model has to be optimized without supervision for test-time samples. Hence, usual methods assign labels for unannotated data with the prediction by a well-trained source model in an unsupervised learning framework. Previous studies have employed unsupervised objectives, such as the entropy of model predictions, as optimization targets to effectively learn features for test-time samples. However, the performance of the model is easily compromised by the quality of pseudo-labels, since inaccuracies in pseudo-labels introduce noise to the model. Therefore, we propose to leverage the "less probable categories" to decrease the risk of incorrect pseudo-labeling. The complementary label is introduced to designate these categories. We highlight that the risk function of complementary labels agrees with their Vanilla loss formula under the conventional true label distribution. Experiments show that the proposed learning algorithm achieves state-of-the-art performance on different datasets and experiment settings.

MouseGAN++: Unsupervised Disentanglement and Contrastive Representation for Multiple MRI Modalities Synthesis and Structural Segmentation of Mouse Brain

Segmenting the fine structure of the mouse brain on magnetic resonance (MR) images is critical for delineating morphological regions, analyzing brain function, and understanding their relationships. Compared to a single MRI modality, multimodal MRI data provide complementary tissue features that can be exploited by deep learning models, resulting in better segmentation results. However, multimodal mouse brain MRI data is often lacking, making automatic segmentation of mouse brain fine structure a very challenging task. To address this issue, it is necessary to fuse multimodal MRI data to produce distinguished contrasts in different brain structures. Hence, we propose a novel disentangled and contrastive GAN-based framework, named MouseGAN++, to synthesize multiple MR modalities from single ones in a structure-preserving manner, thus improving the segmentation performance by imputing missing modalities and multi-modality fusion. Our results demonstrate that the translation performance of our method outperforms the state-of-the-art methods. Using the subsequently learned modality-invariant information as well as the modality-translated images, MouseGAN++ can segment fine brain structures with averaged dice coefficients of 90.0% (T2w) and 87.9% (T1w), respectively, achieving around +10% performance improvement compared to the state-of-the-art algorithms. Our results demonstrate that MouseGAN++, as a simultaneous image synthesis and segmentation method, can be used to fuse cross-modality information in an unpaired manner and yield more robust performance in the absence of multimodal data. We release our method as a mouse brain structural segmentation tool for free academic usage at https://github.com/yu02019.

AGO-Net: Association-Guided 3D Point Cloud Object Detection Network

The human brain can effortlessly recognize and localize objects, whereas current 3D object detection methods based on LiDAR point clouds still report inferior performance for detecting occluded and distant objects: the point cloud appearance varies greatly due to occlusion, and has inherent variance in point densities along the distance to sensors. Therefore, designing feature representations robust to such point clouds is critical. Inspired by human associative recognition, we propose a novel 3D detection framework that associates intact features for objects via domain adaptation. We bridge the gap between the perceptual domain, where features are derived from real scenes with sub-optimal representations, and the conceptual domain, where features are extracted from augmented scenes that consist of non-occlusion objects with rich detailed information. A feasible method is investigated to construct conceptual scenes without external datasets. We further introduce an attention-based re-weighting module that adaptively strengthens the feature adaptation of more informative regions. The network's feature enhancement ability is exploited without introducing extra cost during inference, which is plug-and-play in various 3D detection frameworks. We achieve new state-of-the-art performance on the KITTI 3D detection benchmark in both accuracy and speed. Experiments on nuScenes and Waymo datasets also validate the versatility of our method.

Accelerating Score-based Generative Models with Preconditioned Diffusion Sampling

Score-based generative models (SGMs) have recently emerged as a promising class of generative models. However, a fundamental limitation is that their inference is very slow due to a need for many (e.g., 2000) iterations of sequential computations. An intuitive acceleration method is to reduce the sampling iterations which however causes severe performance degradation. We investigate this problem by viewing the diffusion sampling process as a Metropolis adjusted Langevin algorithm, which helps reveal the underlying cause to be ill-conditioned curvature. Under this insight, we propose a model-agnostic preconditioned diffusion sampling (PDS) method that leverages matrix preconditioning to alleviate the aforementioned problem. Crucially, PDS is proven theoretically to converge to the original target distribution of a SGM, no need for retraining. Extensive experiments on three image datasets with a variety of resolutions and diversity validate that PDS consistently accelerates off-the-shelf SGMs whilst maintaining the synthesis quality. In particular, PDS can accelerate by up to 29x on more challenging high resolution (1024x1024) image generation.

Visual Representation Learning with Transformer: A Sequence-to-Sequence Perspective

Visual representation learning is the key of solving various vision problems. Relying on the seminal grid structure priors, convolutional neural networks (CNNs) have been the de facto standard architectures of most deep vision models. For instance, classical semantic segmentation methods often adopt a fully-convolutional network (FCN) with an encoder-decoder architecture. The encoder progressively reduces the spatial resolution and learns more abstract visual concepts with larger receptive fields. Since context modeling is critical for segmentation, the latest efforts have been focused on increasing the receptive field, through either dilated (i.e., atrous) convolutions or inserting attention modules. However, the FCN-based architecture remains unchanged. In this paper, we aim to provide an alternative perspective by treating visual representation learning generally as a sequence-to-sequence prediction task. Specifically, we deploy a pure Transformer to encode an image as a sequence of patches, without local convolution and resolution reduction. With the global context modeled in every layer of the Transformer, stronger visual representation can be learned for better tackling vision tasks. In particular, our segmentation model, termed as SEgmentation TRansformer (SETR), excels on ADE20K (50.28% mIoU, the first position in the test leaderboard on the day of submission), Pascal Context (55.83% mIoU) and reaches competitive results on Cityscapes. Further, we formulate a family of Hierarchical Local-Global (HLG) Transformers characterized by local attention within windows and global-attention across windows in a hierarchical and pyramidal architecture. Extensive experiments show that our method achieves appealing performance on a variety of visual recognition tasks (e.g., image classification, object detection and instance segmentation and semantic segmentation).