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Towards Launching AI Algorithms for Cellular Pathology into Clinical & Pharmaceutical Orbits

Dec 17, 2021
Amina Asif, Kashif Rajpoot, David Snead, Fayyaz Minhas, Nasir Rajpoot

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CoNIC: Colon Nuclei Identification and Counting Challenge 2022

Nov 29, 2021
Simon Graham, Mostafa Jahanifar, Quoc Dang Vu, Giorgos Hadjigeorghiou, Thomas Leech, David Snead, Shan E Ahmed Raza, Fayyaz Minhas, Nasir Rajpoot

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SlideGraph+: Whole Slide Image Level Graphs to Predict HER2Status in Breast Cancer

Oct 12, 2021
Wenqi Lu, Michael Toss, Emad Rakha, Nasir Rajpoot, Fayyaz Minhas

* 20 pages, 11 figures, 3 tables 

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Stain-Robust Mitotic Figure Detection for the Mitosis Domain Generalization Challenge

Sep 29, 2021
Mostafa Jahanifar, Adam Shephard, Neda Zamani Tajeddin, R. M. Saad Bashir, Mohsin Bilal, Syed Ali Khurram, Fayyaz Minhas, Nasir Rajpoot

* MIDOG challenge at MICCAI 2021 

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Lizard: A Large-Scale Dataset for Colonic Nuclear Instance Segmentation and Classification

Aug 25, 2021
Simon Graham, Mostafa Jahanifar, Ayesha Azam, Mohammed Nimir, Yee-Wah Tsang, Katherine Dodd, Emily Hero, Harvir Sahota, Atisha Tank, Ksenija Benes, Noorul Wahab, Fayyaz Minhas, Shan E Ahmed Raza, Hesham El Daly, Kishore Gopalakrishnan, David Snead, Nasir Rajpoot

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L1-regularized neural ranking for risk stratification and its application to prediction of time to distant metastasis in luminal node negative chemotherapy naïve breast cancer patients

Aug 23, 2021
Fayyaz Minhas, Michael S. Toss, Noor ul Wahab, Emad Rakha, Nasir M. Rajpoot

* Accepted in proc. (Machine Learning for Pharma and Healthcare Applications PharML 2021) European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases, Sep 13-17, 2021 

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Semantic annotation for computational pathology: Multidisciplinary experience and best practice recommendations

Jun 25, 2021
Noorul Wahab, Islam M Miligy, Katherine Dodd, Harvir Sahota, Michael Toss, Wenqi Lu, Mostafa Jahanifar, Mohsin Bilal, Simon Graham, Young Park, Giorgos Hadjigeorghiou, Abhir Bhalerao, Ayat Lashen, Asmaa Ibrahim, Ayaka Katayama, Henry O Ebili, Matthew Parkin, Tom Sorell, Shan E Ahmed Raza, Emily Hero, Hesham Eldaly, Yee Wah Tsang, Kishore Gopalakrishnan, David Snead, Emad Rakha, Nasir Rajpoot, Fayyaz Minhas

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Now You See It, Now You Dont: Adversarial Vulnerabilities in Computational Pathology

Jun 16, 2021
Alex Foote, Amina Asif, Ayesha Azam, Tim Marshall-Cox, Nasir Rajpoot, Fayyaz Minhas

* 10 pages 

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Elementary Effects Analysis of factors controlling COVID-19 infections in computational simulation reveals the importance of Social Distancing and Mask Usage

Nov 20, 2020
Kelvin K. F. Li, Stephen A. Jarvis, Fayyaz Minhas

* 14 pages, 10 figures 

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SAFRON: Stitching Across the Frontier for Generating Colorectal Cancer Histology Images

Aug 11, 2020
Srijay Deshpande, Fayyaz Minhas, Simon Graham, Nasir Rajpoot

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AMP0: Species-Specific Prediction of Anti-microbial Peptides using Zero and Few Shot Learning

Oct 28, 2019
Sadaf Gull, Fayyaz Minhas

* Under journal submission, 2019 

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Ten ways to fool the masses with machine learning

Jan 07, 2019
Fayyaz Minhas, Amina Asif, Asa Ben-Hur

* 11 pages, 8 figures 

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Machine Learning with Abstention for Automated Liver Disease Diagnosis

Nov 11, 2018
Kanza Hamid, Amina Asif, Wajid Abbasi, Durre Sabih, Fayyaz Minhas

* Preprint version before submission for publication. complete version published in proc. 15th International Conference on Frontiers of Information Technology (FIT 2017), December 18-20, 2017, Islamabad, Pakistan. 

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