Enhancing Phenotype Recognition in Clinical Notes Using Large Language Models: PhenoBCBERT and PhenoGPT

We hypothesize that large language models (LLMs) based on the transformer architecture can enable automated detection of clinical phenotype terms, including terms not documented in the HPO. In this study, we developed two types of models: PhenoBCBERT, a BERT-based model, utilizing Bio+Clinical BERT as its pre-trained model, and PhenoGPT, a GPT-based model that can be initialized from diverse GPT models, including open-source versions such as GPT-J, Falcon, and LLaMA, as well as closed-source versions such as GPT-3 and GPT-3.5. We compared our methods with PhenoTagger, a recently developed HPO recognition tool that combines rule-based and deep learning methods. We found that our methods can extract more phenotype concepts, including novel ones not characterized by HPO. We also performed case studies on biomedical literature to illustrate how new phenotype information can be recognized and extracted. We compared current BERT-based versus GPT-based models for phenotype tagging, in multiple aspects including model architecture, memory usage, speed, accuracy, and privacy protection. We also discussed the addition of a negation step and an HPO normalization layer to the transformer models for improved HPO term tagging. In conclusion, PhenoBCBERT and PhenoGPT enable the automated discovery of phenotype terms from clinical notes and biomedical literature, facilitating automated downstream tasks to derive new biological insights on human diseases.

Exploring Part-Informed Visual-Language Learning for Person Re-Identification

Recently, visual-language learning has shown great potential in enhancing visual-based person re-identification (ReID). Existing visual-language learning-based ReID methods often focus on whole-body scale image-text feature alignment, while neglecting supervisions on fine-grained part features. This choice simplifies the learning process but cannot guarantee within-part feature semantic consistency thus hindering the final performance. Therefore, we propose to enhance fine-grained visual features with part-informed language supervision for ReID tasks. The proposed method, named Part-Informed Visual-language Learning ($\pi$-VL), suggests that (i) a human parsing-guided prompt tuning strategy and (ii) a hierarchical fusion-based visual-language alignment paradigm play essential roles in ensuring within-part feature semantic consistency. Specifically, we combine both identity labels and parsing maps to constitute pixel-level text prompts and fuse multi-stage visual features with a light-weight auxiliary head to perform fine-grained image-text alignment. As a plug-and-play and inference-free solution, our $\pi$-VL achieves substantial improvements over previous state-of-the-arts on four common-used ReID benchmarks, especially reporting 90.3% Rank-1 and 76.5% mAP for the most challenging MSMT17 database without bells and whistles.

PIMbot: Policy and Incentive Manipulation for Multi-Robot Reinforcement Learning in Social Dilemmas

Recent research has demonstrated the potential of reinforcement learning (RL) in enabling effective multi-robot collaboration, particularly in social dilemmas where robots face a trade-off between self-interests and collective benefits. However, environmental factors such as miscommunication and adversarial robots can impact cooperation, making it crucial to explore how multi-robot communication can be manipulated to achieve different outcomes. This paper presents a novel approach, namely PIMbot, to manipulating the reward function in multi-robot collaboration through two distinct forms of manipulation: policy and incentive manipulation. Our work introduces a new angle for manipulation in recent multi-agent RL social dilemmas that utilize a unique reward function for incentivization. By utilizing our proposed PIMbot mechanisms, a robot is able to manipulate the social dilemma environment effectively. PIMbot has the potential for both positive and negative impacts on the task outcome, where positive impacts lead to faster convergence to the global optimum and maximized rewards for any chosen robot. Conversely, negative impacts can have a detrimental effect on the overall task performance. We present comprehensive experimental results that demonstrate the effectiveness of our proposed methods in the Gazebo-simulated multi-robot environment. Our work provides insights into how inter-robot communication can be manipulated and has implications for various robotic applications. %, including robotics, transportation, and manufacturing.

How Does Diffusion Influence Pretrained Language Models on Out-of-Distribution Data?

Transformer-based pretrained language models (PLMs) have achieved great success in modern NLP. An important advantage of PLMs is good out-of-distribution (OOD) robustness. Recently, diffusion models have attracted a lot of work to apply diffusion to PLMs. It remains under-explored how diffusion influences PLMs on OOD data. The core of diffusion models is a forward diffusion process which gradually applies Gaussian noise to inputs, and a reverse denoising process which removes noise. The noised input reconstruction is a fundamental ability of diffusion models. We directly analyze OOD robustness by measuring the reconstruction loss, including testing the abilities to reconstruct OOD data, and to detect OOD samples. Experiments are conducted by analyzing different training parameters and data statistical features on eight datasets. It shows that finetuning PLMs with diffusion degrades the reconstruction ability on OOD data. The comparison also shows that diffusion models can effectively detect OOD samples, achieving state-of-the-art performance in most of the datasets with an absolute accuracy improvement up to 18%. These results indicate that diffusion reduces OOD robustness of PLMs.

MIMONet: Multi-Input Multi-Output On-Device Deep Learning

Future intelligent robots are expected to process multiple inputs simultaneously (such as image and audio data) and generate multiple outputs accordingly (such as gender and emotion), similar to humans. Recent research has shown that multi-input single-output (MISO) deep neural networks (DNN) outperform traditional single-input single-output (SISO) models, representing a significant step towards this goal. In this paper, we propose MIMONet, a novel on-device multi-input multi-output (MIMO) DNN framework that achieves high accuracy and on-device efficiency in terms of critical performance metrics such as latency, energy, and memory usage. Leveraging existing SISO model compression techniques, MIMONet develops a new deep-compression method that is specifically tailored to MIMO models. This new method explores unique yet non-trivial properties of the MIMO model, resulting in boosted accuracy and on-device efficiency. Extensive experiments on three embedded platforms commonly used in robotic systems, as well as a case study using the TurtleBot3 robot, demonstrate that MIMONet achieves higher accuracy and superior on-device efficiency compared to state-of-the-art SISO and MISO models, as well as a baseline MIMO model we constructed. Our evaluation highlights the real-world applicability of MIMONet and its potential to significantly enhance the performance of intelligent robotic systems.

DyCL: Dynamic Neural Network Compilation Via Program Rewriting and Graph Optimization

DL compiler's primary function is to translate DNN programs written in high-level DL frameworks such as PyTorch and TensorFlow into portable executables. These executables can then be flexibly executed by the deployed host programs. However, existing DL compilers rely on a tracing mechanism, which involves feeding a runtime input to a neural network program and tracing the program execution paths to generate the computational graph necessary for compilation. Unfortunately, this mechanism falls short when dealing with modern dynamic neural networks (DyNNs) that possess varying computational graphs depending on the inputs. Consequently, conventional DL compilers struggle to accurately compile DyNNs into executable code. To address this limitation, we propose \tool, a general approach that enables any existing DL compiler to successfully compile DyNNs. \tool tackles the dynamic nature of DyNNs by introducing a compilation mechanism that redistributes the control and data flow of the original DNN programs during the compilation process. Specifically, \tool develops program analysis and program transformation techniques to convert a dynamic neural network into multiple sub-neural networks. Each sub-neural network is devoid of conditional statements and is compiled independently. Furthermore, \tool synthesizes a host module that models the control flow of the DyNNs and facilitates the invocation of the sub-neural networks. Our evaluation demonstrates the effectiveness of \tool, achieving a 100\% success rate in compiling all dynamic neural networks. Moreover, the compiled executables generated by \tool exhibit significantly improved performance, running between $1.12\times$ and $20.21\times$ faster than the original DyNNs executed on general-purpose DL frameworks.

Weakly Supervised Scene Text Generation for Low-resource Languages

A large number of annotated training images is crucial for training successful scene text recognition models. However, collecting sufficient datasets can be a labor-intensive and costly process, particularly for low-resource languages. To address this challenge, auto-generating text data has shown promise in alleviating the problem. Unfortunately, existing scene text generation methods typically rely on a large amount of paired data, which is difficult to obtain for low-resource languages. In this paper, we propose a novel weakly supervised scene text generation method that leverages a few recognition-level labels as weak supervision. The proposed method is able to generate a large amount of scene text images with diverse backgrounds and font styles through cross-language generation. Our method disentangles the content and style features of scene text images, with the former representing textual information and the latter representing characteristics such as font, alignment, and background. To preserve the complete content structure of generated images, we introduce an integrated attention module. Furthermore, to bridge the style gap in the style of different languages, we incorporate a pre-trained font classifier. We evaluate our method using state-of-the-art scene text recognition models. Experiments demonstrate that our generated scene text significantly improves the scene text recognition accuracy and help achieve higher accuracy when complemented with other generative methods.

JiuZhang 2.0: A Unified Chinese Pre-trained Language Model for Multi-task Mathematical Problem Solving

Although pre-trained language models~(PLMs) have recently advanced the research progress in mathematical reasoning, they are not specially designed as a capable multi-task solver, suffering from high cost for multi-task deployment (\eg a model copy for a task) and inferior performance on complex mathematical problems in practical applications. To address these issues, in this paper, we propose \textbf{JiuZhang~2.0}, a unified Chinese PLM specially for multi-task mathematical problem solving. Our idea is to maintain a moderate-sized model and employ the \emph{cross-task knowledge sharing} to improve the model capacity in a multi-task setting. Specially, we construct a Mixture-of-Experts~(MoE) architecture for modeling mathematical text, so as to capture the common mathematical knowledge across tasks. For optimizing the MoE architecture, we design \emph{multi-task continual pre-training} and \emph{multi-task fine-tuning} strategies for multi-task adaptation. These training strategies can effectively decompose the knowledge from the task data and establish the cross-task sharing via expert networks. In order to further improve the general capacity of solving different complex tasks, we leverage large language models~(LLMs) as complementary models to iteratively refine the generated solution by our PLM, via in-context learning. Extensive experiments have demonstrated the effectiveness of our model.

Bi-LRFusion: Bi-Directional LiDAR-Radar Fusion for 3D Dynamic Object Detection

LiDAR and Radar are two complementary sensing approaches in that LiDAR specializes in capturing an object's 3D shape while Radar provides longer detection ranges as well as velocity hints. Though seemingly natural, how to efficiently combine them for improved feature representation is still unclear. The main challenge arises from that Radar data are extremely sparse and lack height information. Therefore, directly integrating Radar features into LiDAR-centric detection networks is not optimal. In this work, we introduce a bi-directional LiDAR-Radar fusion framework, termed Bi-LRFusion, to tackle the challenges and improve 3D detection for dynamic objects. Technically, Bi-LRFusion involves two steps: first, it enriches Radar's local features by learning important details from the LiDAR branch to alleviate the problems caused by the absence of height information and extreme sparsity; second, it combines LiDAR features with the enhanced Radar features in a unified bird's-eye-view representation. We conduct extensive experiments on nuScenes and ORR datasets, and show that our Bi-LRFusion achieves state-of-the-art performance for detecting dynamic objects. Notably, Radar data in these two datasets have different formats, which demonstrates the generalizability of our method. Codes are available at https://github.com/JessieW0806/BiLRFusion.

SlothSpeech: Denial-of-service Attack Against Speech Recognition Models

Deep Learning (DL) models have been popular nowadays to execute different speech-related tasks, including automatic speech recognition (ASR). As ASR is being used in different real-time scenarios, it is important that the ASR model remains efficient against minor perturbations to the input. Hence, evaluating efficiency robustness of the ASR model is the need of the hour. We show that popular ASR models like Speech2Text model and Whisper model have dynamic computation based on different inputs, causing dynamic efficiency. In this work, we propose SlothSpeech, a denial-of-service attack against ASR models, which exploits the dynamic behaviour of the model. SlothSpeech uses the probability distribution of the output text tokens to generate perturbations to the audio such that efficiency of the ASR model is decreased. We find that SlothSpeech generated inputs can increase the latency up to 40X times the latency induced by benign input.