Assessing and Mitigating Medical Knowledge Drift and Conflicts in Large Language Models

Large Language Models (LLMs) have great potential in the field of health care, yet they face great challenges in adapting to rapidly evolving medical knowledge. This can lead to outdated or contradictory treatment suggestions. This study investigated how LLMs respond to evolving clinical guidelines, focusing on concept drift and internal inconsistencies. We developed the DriftMedQA benchmark to simulate guideline evolution and assessed the temporal reliability of various LLMs. Our evaluation of seven state-of-the-art models across 4,290 scenarios demonstrated difficulties in rejecting outdated recommendations and frequently endorsing conflicting guidance. Additionally, we explored two mitigation strategies: Retrieval-Augmented Generation and preference fine-tuning via Direct Preference Optimization. While each method improved model performance, their combination led to the most consistent and reliable results. These findings underscore the need to improve LLM robustness to temporal shifts to ensure more dependable applications in clinical practice.

AlphaLoRA: Assigning LoRA Experts Based on Layer Training Quality

Parameter-efficient fine-tuning methods, such as Low-Rank Adaptation (LoRA), are known to enhance training efficiency in Large Language Models (LLMs). Due to the limited parameters of LoRA, recent studies seek to combine LoRA with Mixture-of-Experts (MoE) to boost performance across various tasks. However, inspired by the observed redundancy in traditional MoE structures, previous studies identify similar redundancy among LoRA experts within the MoE architecture, highlighting the necessity for non-uniform allocation of LoRA experts across different layers. In this paper, we leverage Heavy-Tailed Self-Regularization (HT-SR) Theory to design a fine-grained allocation strategy. Our analysis reveals that the number of experts per layer correlates with layer training quality, which exhibits significant variability across layers. Based on this, we introduce AlphaLoRA, a theoretically principled and training-free method for allocating LoRA experts to further mitigate redundancy. Experiments on three models across ten language processing and reasoning benchmarks demonstrate that AlphaLoRA achieves comparable or superior performance over all baselines. Our code is available at https://github.com/morelife2017/alphalora.

Practical Unlearning for Large Language Models

While LLMs have demonstrated impressive performance across various domains and tasks, their security issues have become increasingly severe. Machine unlearning (MU) has emerged as a promising solution to address these issues by removing the influence of undesired data on the target model without compromising its utility in other aspects. MU typically assumes full access to the original training data to preserve utility, which is difficult to achieve in LLM unlearning. Existing LLM unlearning methods often assume access to data most affected by undesired data unlearning. However, this assumption underestimates the entanglement among various LLM capabilities and ignores data access limitations due to various issues. Moreover, these LLM unlearning methods do not sufficiently consider that unlearning requests in real-world scenarios are continuously emerging. To overcome these challenges and achieve practical LLM unlearning, we propose the O3 framework. The O3 framework includes an Out-Of-Distribution (OOD) detector to measure the similarity between input and unlearning data, and an Orthogonal low-rank adapter (LoRA) for continuously unlearning requested data. The OOD detector is trained with a novel contrastive entropy loss and utilizes a local-global layer-aggregated scoring mechanism. The orthogonal LoRA achieves parameter disentanglement among continual unlearning requests. During inference, our O3 framework can smartly decide whether and to what extent to load the unlearning LoRA based on the OOD detector's predictions. Notably, O3's effectiveness does not rely on any retained data. We conducted extensive experiments on O3 and state-of-the-art LLM unlearning methods across three tasks and seven datasets. The results indicate that O3 consistently achieves the best trade-off between unlearning effectiveness and utility preservation, especially when facing continuous unlearning requests.

Memory-Efficient Sparse Pyramid Attention Networks for Whole Slide Image Analysis

Whole Slide Images (WSIs) are crucial for modern pathological diagnosis, yet their gigapixel-scale resolutions and sparse informative regions pose significant computational challenges. Traditional dense attention mechanisms, widely used in computer vision and natural language processing, are impractical for WSI analysis due to the substantial data scale and the redundant processing of uninformative areas. To address these challenges, we propose Memory-Efficient Sparse Pyramid Attention Networks with Shifted Windows (SPAN), drawing inspiration from state-of-the-art sparse attention techniques in other domains. SPAN introduces a sparse pyramid attention architecture that hierarchically focuses on informative regions within the WSI, aiming to reduce memory overhead while preserving critical features. Additionally, the incorporation of shifted windows enables the model to capture long-range contextual dependencies essential for accurate classification. We evaluated SPAN on multiple public WSI datasets, observing its competitive performance. Unlike existing methods that often struggle to model spatial and contextual information due to memory constraints, our approach enables the accurate modeling of these crucial features. Our study also highlights the importance of key design elements in attention mechanisms, such as the shifted-window scheme and the hierarchical structure, which contribute substantially to the effectiveness of SPAN in WSI analysis. The potential of SPAN for memory-efficient and effective analysis of WSI data is thus demonstrated, and the code will be made publicly available following the publication of this work.

Exploring the Distinctiveness and Fidelity of the Descriptions Generated by Large Vision-Language Models

Large Vision-Language Models (LVLMs) are gaining traction for their remarkable ability to process and integrate visual and textual data. Despite their popularity, the capacity of LVLMs to generate precise, fine-grained textual descriptions has not been fully explored. This study addresses this gap by focusing on \textit{distinctiveness} and \textit{fidelity}, assessing how models like Open-Flamingo, IDEFICS, and MiniGPT-4 can distinguish between similar objects and accurately describe visual features. We proposed the Textual Retrieval-Augmented Classification (TRAC) framework, which, by leveraging its generative capabilities, allows us to delve deeper into analyzing fine-grained visual description generation. This research provides valuable insights into the generation quality of LVLMs, enhancing the understanding of multimodal language models. Notably, MiniGPT-4 stands out for its better ability to generate fine-grained descriptions, outperforming the other two models in this aspect. The code is provided at \url{https://anonymous.4open.science/r/Explore_FGVDs-E277}.

Higher Layers Need More LoRA Experts

Parameter-efficient tuning (PEFT) techniques like low-rank adaptation (LoRA) offer training efficiency on Large Language Models, but their impact on model performance remains limited. Recent efforts integrate LoRA and Mixture-of-Experts (MoE) to improve the performance of PEFT methods. Despite promising results, research on improving the efficiency of LoRA with MoE is still in its early stages. Recent studies have shown that experts in the MoE architecture have different strengths and also exhibit some redundancy. Does this statement also apply to parameter-efficient MoE? In this paper, we introduce a novel parameter-efficient MoE method, \textit{\textbf{M}oE-L\textbf{o}RA with \textbf{L}ayer-wise Expert \textbf{A}llocation (MoLA)} for Transformer-based models, where each model layer has the flexibility to employ a varying number of LoRA experts. We investigate several architectures with varying layer-wise expert configurations. Experiments on six well-known NLP and commonsense QA benchmarks demonstrate that MoLA achieves equal or superior performance compared to all baselines. We find that allocating more LoRA experts to higher layers further enhances the effectiveness of models with a certain number of experts in total. With much fewer parameters, this allocation strategy outperforms the setting with the same number of experts in every layer. This work can be widely used as a plug-and-play parameter-efficient tuning approach for various applications. The code is available at https://github.com/GCYZSL/MoLA.

How to Configure Good In-Context Sequence for Visual Question Answering

Inspired by the success of Large Language Models in dealing with new tasks via In-Context Learning (ICL) in NLP, researchers have also developed Large Vision-Language Models (LVLMs) with ICL capabilities. However, when implementing ICL using these LVLMs, researchers usually resort to the simplest way like random sampling to configure the in-context sequence, thus leading to sub-optimal results. To enhance the ICL performance, in this study, we use Visual Question Answering (VQA) as case study to explore diverse in-context configurations to find the powerful ones. Additionally, through observing the changes of the LVLM outputs by altering the in-context sequence, we gain insights into the inner properties of LVLMs, improving our understanding of them. Specifically, to explore in-context configurations, we design diverse retrieval methods and employ different strategies to manipulate the retrieved demonstrations. Through exhaustive experiments on three VQA datasets: VQAv2, VizWiz, and OK-VQA, we uncover three important inner properties of the applied LVLM and demonstrate which strategies can consistently improve the ICL VQA performance. Our code is provided in: https://github.com/GaryJiajia/OFv2_ICL_VQA.

Improving Representation Learning for Histopathologic Images with Cluster Constraints

Recent advances in whole-slide image (WSI) scanners and computational capabilities have significantly propelled the application of artificial intelligence in histopathology slide analysis. While these strides are promising, current supervised learning approaches for WSI analysis come with the challenge of exhaustively labeling high-resolution slides - a process that is both labor-intensive and time-consuming. In contrast, self-supervised learning (SSL) pretraining strategies are emerging as a viable alternative, given that they don't rely on explicit data annotations. These SSL strategies are quickly bridging the performance disparity with their supervised counterparts. In this context, we introduce an SSL framework. This framework aims for transferable representation learning and semantically meaningful clustering by synergizing invariance loss and clustering loss in WSI analysis. Notably, our approach outperforms common SSL methods in downstream classification and clustering tasks, as evidenced by tests on the Camelyon16 and a pancreatic cancer dataset. The code and additional details are accessible at: https://github.com/wwyi1828/CluSiam.

Bootstrapping Vision-Language Learning with Decoupled Language Pre-training

We present a novel methodology aimed at optimizing the application of frozen large language models (LLMs) for resource-intensive vision-language (VL) pre-training. The current paradigm uses visual features as prompts to guide language models, with a focus on determining the most relevant visual features for corresponding text. Our approach diverges by concentrating on the language component, specifically identifying the optimal prompts to align with visual features. We introduce the Prompt-Transformer (P-Former), a model that predicts these ideal prompts, which is trained exclusively on linguistic data, bypassing the need for image-text pairings. This strategy subtly bifurcates the end-to-end VL training process into an additional, separate stage. Our experiments reveal that our framework significantly enhances the performance of a robust image-to-text baseline (BLIP-2), and effectively narrows the performance gap between models trained with either 4M or 129M image-text pairs. Importantly, our framework is modality-agnostic and flexible in terms of architectural design, as validated by its successful application in a video learning task using varied base modules. The code is available at https://github.com/yiren-jian/BLIText

Knowledge from Large-Scale Protein Contact Prediction Models Can Be Transferred to the Data-Scarce RNA Contact Prediction Task

RNA, whose functionality is largely determined by its structure, plays an important role in many biological activities. The prediction of pairwise structural proximity between each nucleotide of an RNA sequence can characterize the structural information of the RNA. Historically, this problem has been tackled by machine learning models using expert-engineered features and trained on scarce labeled datasets. Here, we find that the knowledge learned by a protein-coevolution Transformer-based deep neural network can be transferred to the RNA contact prediction task. As protein datasets are orders of magnitude larger than those for RNA contact prediction, our findings and the subsequent framework greatly reduce the data scarcity bottleneck. Experiments confirm that RNA contact prediction through transfer learning using a publicly available protein model is greatly improved. Our findings indicate that the learned structural patterns of proteins can be transferred to RNAs, opening up potential new avenues for research.