Label Informed Contrastive Pretraining for Node Importance Estimation on Knowledge Graphs

Node Importance Estimation (NIE) is a task of inferring importance scores of the nodes in a graph. Due to the availability of richer data and knowledge, recent research interests of NIE have been dedicating to knowledge graphs for predicting future or missing node importance scores. Existing state-of-the-art NIE methods train the model by available labels, and they consider every interested node equally before training. However, the nodes with higher importance often require or receive more attention in real-world scenarios, e.g., people may care more about the movies or webpages with higher importance. To this end, we introduce Label Informed ContrAstive Pretraining (LICAP) to the NIE problem for being better aware of the nodes with high importance scores. Specifically, LICAP is a novel type of contrastive learning framework that aims to fully utilize the continuous labels to generate contrastive samples for pretraining embeddings. Considering the NIE problem, LICAP adopts a novel sampling strategy called top nodes preferred hierarchical sampling to first group all interested nodes into a top bin and a non-top bin based on node importance scores, and then divide the nodes within top bin into several finer bins also based on the scores. The contrastive samples are generated from those bins, and are then used to pretrain node embeddings of knowledge graphs via a newly proposed Predicate-aware Graph Attention Networks (PreGAT), so as to better separate the top nodes from non-top nodes, and distinguish the top nodes within top bin by keeping the relative order among finer bins. Extensive experiments demonstrate that the LICAP pretrained embeddings can further boost the performance of existing NIE methods and achieve the new state-of-the-art performance regarding both regression and ranking metrics. The source code for reproducibility is available at https://github.com/zhangtia16/LICAP

Fossil Image Identification using Deep Learning Ensembles of Data Augmented Multiviews

Identification of fossil species is crucial to evolutionary studies. Recent advances from deep learning have shown promising prospects in fossil image identification. However, the quantity and quality of labeled fossil images are often limited due to fossil preservation, conditioned sampling, and expensive and inconsistent label annotation by domain experts, which pose great challenges to the training of deep learning based image classification models. To address these challenges, we follow the idea of the wisdom of crowds and propose a novel multiview ensemble framework, which collects multiple views of each fossil specimen image reflecting its different characteristics to train multiple base deep learning models and then makes final decisions via soft voting. We further develop OGS method that integrates original, gray, and skeleton views under this framework to demonstrate the effectiveness. Experimental results on the fusulinid fossil dataset over five deep learning based milestone models show that OGS using three base models consistently outperforms the baseline using a single base model, and the ablation study verifies the usefulness of each selected view. Besides, OGS obtains the superior or comparable performance compared to the method under well-known bagging framework. Moreover, as the available training data decreases, the proposed framework achieves more performance gains compared to the baseline. Furthermore, a consistency test with two human experts shows that OGS obtains the highest agreement with both the labels of dataset and the two experts. Notably, this methodology is designed for general fossil identification and it is expected to see applications on other fossil datasets. The results suggest the potential application when the quantity and quality of labeled data are particularly restricted, e.g., to identify rare fossil images.

A Survey of Trustworthy Graph Learning: Reliability, Explainability, and Privacy Protection

Deep graph learning has achieved remarkable progresses in both business and scientific areas ranging from finance and e-commerce, to drug and advanced material discovery. Despite these progresses, how to ensure various deep graph learning algorithms behave in a socially responsible manner and meet regulatory compliance requirements becomes an emerging problem, especially in risk-sensitive domains. Trustworthy graph learning (TwGL) aims to solve the above problems from a technical viewpoint. In contrast to conventional graph learning research which mainly cares about model performance, TwGL considers various reliability and safety aspects of the graph learning framework including but not limited to robustness, explainability, and privacy. In this survey, we provide a comprehensive review of recent leading approaches in the TwGL field from three dimensions, namely, reliability, explainability, and privacy protection. We give a general categorization for existing work and review typical work for each category. To give further insights for TwGL research, we provide a unified view to inspect previous works and build the connection between them. We also point out some important open problems remaining to be solved in the future developments of TwGL.

Recent Advances in Reliable Deep Graph Learning: Adversarial Attack, Inherent Noise, and Distribution Shift

Deep graph learning (DGL) has achieved remarkable progress in both business and scientific areas ranging from finance and e-commerce to drug and advanced material discovery. Despite the progress, applying DGL to real-world applications faces a series of reliability threats including adversarial attacks, inherent noise, and distribution shift. This survey aims to provide a comprehensive review of recent advances for improving the reliability of DGL algorithms against the above threats. In contrast to prior related surveys which mainly focus on adversarial attacks and defense, our survey covers more reliability-related aspects of DGL, i.e., inherent noise and distribution shift. Additionally, we discuss the relationships among above aspects and highlight some important issues to be explored in future research.

Robust Dynamic Network Embedding via Ensembles

Dynamic Network Embedding (DNE) has recently attracted considerable attention due to the advantage of network embedding in various applications and the dynamic nature of many real-world networks. For dynamic networks, the degree of changes, i.e., defined as the averaged number of changed edges between consecutive snapshots spanning a dynamic network, could be very different in real-world scenarios. Although quite a few DNE methods have been proposed, it still remains unclear that whether and to what extent the existing DNE methods are robust to the degree of changes, which is however an important factor in both academic research and industrial applications. In this work, we investigate the robustness issue of DNE methods w.r.t. the degree of changes for the first time and accordingly, propose a robust DNE method. Specifically, the proposed method follows the notion of ensembles where the base learner adopts an incremental Skip-Gram neural embedding approach. To further boost the performance, a novel strategy is proposed to enhance the diversity among base learners at each timestep by capturing different levels of local-global topology. Extensive experiments demonstrate the benefits of special designs in the proposed method, and the superior performance of the proposed method compared to state-of-the-art methods. The comparative study also reveals the robustness issue of some DNE methods. The source code is available at https://github.com/houchengbin/SG-EDNE

GloDyNE: Global Topology Preserving Dynamic Network Embedding

Learning low-dimensional topological representation of a network in dynamic environments is attracting much attention due to the time-evolving nature of many real-world networks. The main and common objective of Dynamic Network Embedding (DNE) is to efficiently update node embeddings while preserving network topology at each time step. The idea of most existing DNE methods is to capture the topological changes at or around the most affected nodes (instead of all nodes) and accordingly update node embeddings. Unfortunately, this kind of approximation, although can improve efficiency, cannot effectively preserve the global topology of a dynamic network at each time step, due to not considering the inactive sub-networks that receive accumulated topological changes propagated via the high-order proximity. To tackle this challenge, we propose a novel node selecting strategy to diversely select the representative nodes over a network, which is coordinated with a new incremental learning paradigm of Skip-Gram based embedding approach. The extensive experiments show GloDyNE, with a small fraction of nodes being selected, can already achieve the superior or comparable performance w.r.t. the state-of-the-art DNE methods in three typical downstream tasks. Particularly, GloDyNE significantly outperforms other methods in the graph reconstruction task, which demonstrates its ability of global topology preservation. The source code is available at https://github.com/houchengbin/GloDyNE

DynWalks: Global Topology and Recent Changes Awareness Dynamic Network Embedding

Learning topological representation of a network in dynamic environments has recently attracted considerable attention due to the time-evolving nature of many real-world networks i.e. nodes/links might be added/removed as time goes on. Dynamic network embedding aims to learn low dimensional embeddings for unseen and seen nodes by using any currently available snapshots of a dynamic network. For seen nodes, the existing methods either treat them equally important or focus on the $k$ most affected nodes at each time step. However, the former solution is time-consuming, and the later solution that relies on incoming changes may lose the global topology---an important feature for downstream tasks. To address these challenges, we propose a dynamic network embedding method called DynWalks, which includes two key components: 1) An online network embedding framework that can dynamically and efficiently learn embeddings based on the selected nodes; 2) A novel online node selecting scheme that offers the flexible choices to balance global topology and recent changes, as well as to fulfill the real-time constraint if needed. The empirical studies on six real-world dynamic networks under three different slicing ways show that DynWalks significantly outperforms the state-of-the-art methods in graph reconstruction tasks, and obtains comparable results in link prediction tasks. Furthermore, the wall-clock time and complexity analysis demonstrate its excellent time and space efficiency. The source code of DynWalks is available at https://github.com/houchengbin/DynWalks

Learning Topological Representation for Networks via Hierarchical Sampling

The topological information is essential for studying the relationship between nodes in a network. Recently, Network Representation Learning (NRL), which projects a network into a low-dimensional vector space, has been shown their advantages in analyzing large-scale networks. However, most existing NRL methods are designed to preserve the local topology of a network, they fail to capture the global topology. To tackle this issue, we propose a new NRL framework, named HSRL, to help existing NRL methods capture both the local and global topological information of a network. Specifically, HSRL recursively compresses an input network into a series of smaller networks using a community-awareness compressing strategy. Then, an existing NRL method is used to learn node embeddings for each compressed network. Finally, the node embeddings of the input network are obtained by concatenating the node embeddings from all compressed networks. Empirical studies for link prediction on five real-world datasets demonstrate the advantages of HSRL over state-of-the-art methods.

Attributed Network Embedding for Incomplete Structure Information

An attributed network enriches a pure network by encoding a part of widely accessible node auxiliary information into node attributes. Learning vector representation of each node a.k.a. Network Embedding (NE) for such an attributed network by considering both structure and attribute information has recently attracted considerable attention, since each node embedding is simply a unified low-dimension vector representation that makes downstream tasks e.g. link prediction more efficient and much easier to realize. Most of previous works have not considered the significant case of a network with incomplete structure information, which however, would often appear in our real-world scenarios e.g. the abnormal users in a social network who intentionally hide their friendships. And different networks obviously have different levels of incomplete structure information, which imposes more challenges to balance two sources of information. To tackle that, we propose a robust NE method called Attributed Biased Random Walks (ABRW) to employ attribute information for compensating incomplete structure information by using transition matrices. The experiments of link prediction and node classification tasks on real-world datasets confirm the robustness and effectiveness of our method to the different levels of the incomplete structure information.