Core: Robust Factual Precision Scoring with Informative Sub-Claim Identification

Hallucinations -- the generation of untrue claims -- pose a challenge to the application of large language models (LLMs) [1] thereby motivating the development of metrics to evaluate factual precision. We observe that popular metrics using the Decompose-Then-Verify framework, such as FActScore [2], can be manipulated by adding obvious or repetitive claims to artificially inflate scores. We expand the FActScore dataset to design and analyze factual precision metrics, demonstrating that models can be trained to achieve high scores under existing metrics through exploiting the issues we identify. This motivates our new customizable plug-and-play subclaim selection component called Core, which filters down individual subclaims according to their uniqueness and informativeness. Metrics augmented by Core are substantially more robust as shown in head-to-head comparisons. We release an evaluation framework supporting the modular use of Core (https://github.com/zipJiang/Core) and various decomposition strategies, and we suggest its adoption by the LLM community. [1] Hong et al., "The Hallucinations Leaderboard -- An Open Effort to Measure Hallucinations in Large Language Models", arXiv:2404.05904v2 [cs.CL]. [2] Min et al., "FActScore: Fine-grained Atomic Evaluation of Factual Precision in Long Form Text Generation", arXiv:2305.14251v2 [cs.CL].

SurgicAI: A Fine-grained Platform for Data Collection and Benchmarking in Surgical Policy Learning

Despite advancements in robotic-assisted surgery, automating complex tasks like suturing remain challenging due to the need for adaptability and precision. Learning-based approaches, particularly reinforcement learning (RL) and imitation learning (IL), require realistic simulation environments for efficient data collection. However, current platforms often include only relatively simple, non-dexterous manipulations and lack the flexibility required for effective learning and generalization. We introduce SurgicAI, a novel platform for development and benchmarking addressing these challenges by providing the flexibility to accommodate both modular subtasks and more importantly task decomposition in RL-based surgical robotics. Compatible with the da Vinci Surgical System, SurgicAI offers a standardized pipeline for collecting and utilizing expert demonstrations. It supports deployment of multiple RL and IL approaches, and the training of both singular and compositional subtasks in suturing scenarios, featuring high dexterity and modularization. Meanwhile, SurgicAI sets clear metrics and benchmarks for the assessment of learned policies. We implemented and evaluated multiple RL and IL algorithms on SurgicAI. Our detailed benchmark analysis underscores SurgicAI's potential to advance policy learning in surgical robotics. Details: \url{https://github.com/surgical-robotics-ai/SurgicAI

A Demographic-Conditioned Variational Autoencoder for fMRI Distribution Sampling and Removal of Confounds

Objective: fMRI and derived measures such as functional connectivity (FC) have been used to predict brain age, general fluid intelligence, psychiatric disease status, and preclinical neurodegenerative disease. However, it is not always clear that all demographic confounds, such as age, sex, and race, have been removed from fMRI data. Additionally, many fMRI datasets are restricted to authorized researchers, making dissemination of these valuable data sources challenging. Methods: We create a variational autoencoder (VAE)-based model, DemoVAE, to decorrelate fMRI features from demographics and generate high-quality synthetic fMRI data based on user-supplied demographics. We train and validate our model using two large, widely used datasets, the Philadelphia Neurodevelopmental Cohort (PNC) and Bipolar and Schizophrenia Network for Intermediate Phenotypes (BSNIP). Results: We find that DemoVAE recapitulates group differences in fMRI data while capturing the full breadth of individual variations. Significantly, we also find that most clinical and computerized battery fields that are correlated with fMRI data are not correlated with DemoVAE latents. An exception are several fields related to schizophrenia medication and symptom severity. Conclusion: Our model generates fMRI data that captures the full distribution of FC better than traditional VAE or GAN models. We also find that most prediction using fMRI data is dependent on correlation with, and prediction of, demographics. Significance: Our DemoVAE model allows for generation of high quality synthetic data conditioned on subject demographics as well as the removal of the confounding effects of demographics. We identify that FC-based prediction tasks are highly influenced by demographic confounds.

Conformal Validity Guarantees Exist for Any Data Distribution

As machine learning (ML) gains widespread adoption, practitioners are increasingly seeking means to quantify and control the risk these systems incur. This challenge is especially salient when ML systems have autonomy to collect their own data, such as in black-box optimization and active learning, where their actions induce sequential feedback-loop shifts in the data distribution. Conformal prediction has emerged as a promising approach to uncertainty and risk quantification, but existing variants either fail to accommodate sequences of data-dependent shifts, or do not fully exploit the fact that agent-induced shift is under our control. In this work we prove that conformal prediction can theoretically be extended to \textit{any} joint data distribution, not just exchangeable or quasi-exchangeable ones, although it is exceedingly impractical to compute in the most general case. For practical applications, we outline a procedure for deriving specific conformal algorithms for any data distribution, and we use this procedure to derive tractable algorithms for a series of agent-induced covariate shifts. We evaluate the proposed algorithms empirically on synthetic black-box optimization and active learning tasks.

Density-Regression: Efficient and Distance-Aware Deep Regressor for Uncertainty Estimation under Distribution Shifts

Morden deep ensembles technique achieves strong uncertainty estimation performance by going through multiple forward passes with different models. This is at the price of a high storage space and a slow speed in the inference (test) time. To address this issue, we propose Density-Regression, a method that leverages the density function in uncertainty estimation and achieves fast inference by a single forward pass. We prove it is distance aware on the feature space, which is a necessary condition for a neural network to produce high-quality uncertainty estimation under distribution shifts. Empirically, we conduct experiments on regression tasks with the cubic toy dataset, benchmark UCI, weather forecast with time series, and depth estimation under real-world shifted applications. We show that Density-Regression has competitive uncertainty estimation performance under distribution shifts with modern deep regressors while using a lower model size and a faster inference speed.

RORA: Robust Free-Text Rationale Evaluation

Free-text rationales play a pivotal role in explainable NLP, bridging the knowledge and reasoning gaps behind a model's decision-making. However, due to the diversity of potential reasoning paths and a corresponding lack of definitive ground truth, their evaluation remains a challenge. Existing evaluation metrics rely on the degree to which a rationale supports a target label, but we find these fall short in evaluating rationales that inadvertently leak the labels. To address this problem, we propose RORA, a Robust free-text Rationale evaluation against label leakage. RORA quantifies the new information supplied by a rationale to justify the label. This is achieved by assessing the conditional V-information \citep{hewitt-etal-2021-conditional} with a predictive family robust against leaky features that can be exploited by a small model. RORA consistently outperforms existing approaches in evaluating human-written, synthetic, or model-generated rationales, particularly demonstrating robustness against label leakage. We also show that RORA aligns well with human judgment, providing a more reliable and accurate measurement across diverse free-text rationales.

Distributionally Robust Policy Evaluation under General Covariate Shift in Contextual Bandits

We introduce a distributionally robust approach that enhances the reliability of offline policy evaluation in contextual bandits under general covariate shifts. Our method aims to deliver robust policy evaluation results in the presence of discrepancies in both context and policy distribution between logging and target data. Central to our methodology is the application of robust regression, a distributionally robust technique tailored here to improve the estimation of conditional reward distribution from logging data. Utilizing the reward model obtained from robust regression, we develop a comprehensive suite of policy value estimators, by integrating our reward model into established evaluation frameworks, namely direct methods and doubly robust methods. Through theoretical analysis, we further establish that the proposed policy value estimators offer a finite sample upper bound for the bias, providing a clear advantage over traditional methods, especially when the shift is large. Finally, we designed an extensive range of policy evaluation scenarios, covering diverse magnitudes of shifts and a spectrum of logging and target policies. Our empirical results indicate that our approach significantly outperforms baseline methods, most notably in 90% of the cases under the policy shift-only settings and 72% of the scenarios under the general covariate shift settings.

Multi-View Variational Autoencoder for Missing Value Imputation in Untargeted Metabolomics

Background: Missing data is a common challenge in mass spectrometry-based metabolomics, which can lead to biased and incomplete analyses. The integration of whole-genome sequencing (WGS) data with metabolomics data has emerged as a promising approach to enhance the accuracy of data imputation in metabolomics studies. Method: In this study, we propose a novel method that leverages the information from WGS data and reference metabolites to impute unknown metabolites. Our approach utilizes a multi-view variational autoencoder to jointly model the burden score, polygenetic risk score (PGS), and linkage disequilibrium (LD) pruned single nucleotide polymorphisms (SNPs) for feature extraction and missing metabolomics data imputation. By learning the latent representations of both omics data, our method can effectively impute missing metabolomics values based on genomic information. Results: We evaluate the performance of our method on empirical metabolomics datasets with missing values and demonstrate its superiority compared to conventional imputation techniques. Using 35 template metabolites derived burden scores, PGS and LD-pruned SNPs, the proposed methods achieved r2-scores > 0.01 for 71.55% of metabolites. Conclusion: The integration of WGS data in metabolomics imputation not only improves data completeness but also enhances downstream analyses, paving the way for more comprehensive and accurate investigations of metabolic pathways and disease associations. Our findings offer valuable insights into the potential benefits of utilizing WGS data for metabolomics data imputation and underscore the importance of leveraging multi-modal data integration in precision medicine research.

MegaWika: Millions of reports and their sources across 50 diverse languages

To foster the development of new models for collaborative AI-assisted report generation, we introduce MegaWika, consisting of 13 million Wikipedia articles in 50 diverse languages, along with their 71 million referenced source materials. We process this dataset for a myriad of applications, going beyond the initial Wikipedia citation extraction and web scraping of content, including translating non-English articles for cross-lingual applications and providing FrameNet parses for automated semantic analysis. MegaWika is the largest resource for sentence-level report generation and the only report generation dataset that is multilingual. We manually analyze the quality of this resource through a semantically stratified sample. Finally, we provide baseline results and trained models for crucial steps in automated report generation: cross-lingual question answering and citation retrieval.

Double-Weighting for Covariate Shift Adaptation

Supervised learning is often affected by a covariate shift in which the marginal distributions of instances (covariates $x$) of training and testing samples $\mathrm{p}_\text{tr}(x)$ and $\mathrm{p}_\text{te}(x)$ are different but the label conditionals coincide. Existing approaches address such covariate shift by either using the ratio $\mathrm{p}_\text{te}(x)/\mathrm{p}_\text{tr}(x)$ to weight training samples (reweighting methods) or using the ratio $\mathrm{p}_\text{tr}(x)/\mathrm{p}_\text{te}(x)$ to weight testing samples (robust methods). However, the performance of such approaches can be poor under support mismatch or when the above ratios take large values. We propose a minimax risk classification (MRC) approach for covariate shift adaptation that avoids such limitations by weighting both training and testing samples. In addition, we develop effective techniques that obtain both sets of weights and generalize the conventional kernel mean matching method. We provide novel generalization bounds for our method that show a significant increase in the effective sample size compared with reweighted methods. The proposed method also achieves enhanced classification performance in both synthetic and empirical experiments.