Protein-SE(3): Benchmarking SE(3)-based Generative Models for Protein Structure Design

SE(3)-based generative models have shown great promise in protein geometry modeling and effective structure design. However, the field currently lacks a modularized benchmark to enable comprehensive investigation and fair comparison of different methods. In this paper, we propose Protein-SE(3), a new benchmark based on a unified training framework, which comprises protein scaffolding tasks, integrated generative models, high-level mathematical abstraction, and diverse evaluation metrics. Recent advanced generative models designed for protein scaffolding, from multiple perspectives like DDPM (Genie1 and Genie2), Score Matching (FrameDiff and RfDiffusion) and Flow Matching (FoldFlow and FrameFlow) are integrated into our framework. All integrated methods are fairly investigated with the same training dataset and evaluation metrics. Furthermore, we provide a high-level abstraction of the mathematical foundations behind the generative models, enabling fast prototyping of future algorithms without reliance on explicit protein structures. Accordingly, we release the first comprehensive benchmark built upon unified training framework for SE(3)-based protein structure design, which is publicly accessible at https://github.com/BruthYU/protein-se3.

XANE(3): An E(3)-Equivariant Graph Neural Network for Accurate Prediction of XANES Spectra from Atomic Structures

We present XANE(3), a physics-based E(3)-equivariant graph neural network for predicting X-ray absorption near-edge structure (XANES) spectra directly from atomic structures. The model combines tensor-product message passing with spherical harmonic edge features, absorber-query attention pooling, custom equivariant layer normalization, adaptive gated residual connections, and a spectral readout based on a multi-scale Gaussian basis with an optional sigmoidal background term. To improve line-shape fidelity, training is performed with a composite objective that includes pointwise spectral reconstruction together with first- and second-derivative matching terms. We evaluate the model on a dataset of 5,941 FDMNES simulations of iron oxide surface facets and obtain a spectrum mean squared error of $1.0 \times 10^{-3}$ on the test set. The model accurately reproduces the main edge structure, relative peak intensities, pre-edge features, and post-edge oscillations. Ablation studies show that the derivative-aware objective, custom equivariant normalization, absorber-conditioned attention pooling, adaptive gated residual mixing, and global background term each improve performance. Interestingly, a capacity-matched scalar-only variant achieves comparable pointwise reconstruction error but reduced derivative-level fidelity, indicating that explicit tensorial channels are not strictly required for low intensity error on this dataset, although they remain beneficial for capturing finer spectral structure. These results establish XANE(3) as an accurate and efficient surrogate for XANES simulation and offer a promising route toward accelerated spectral prediction, ML-assisted spectroscopy, and data-driven materials discovery.

SE(3)-LIO: Smooth IMU Propagation With Jointly Distributed Poses on SE(3) Manifold for Accurate and Robust LiDAR-Inertial Odometry

In estimating odometry accurately, an inertial measurement unit (IMU) is widely used owing to its high-rate measurements, which can be utilized to obtain motion information through IMU propagation. In this paper, we address the limitations of existing IMU propagation methods in terms of motion prediction and motion compensation. In motion prediction, the existing methods typically represent a 6-DoF pose by separating rotation and translation and propagate them on their respective manifold, so that the rotational variation is not effectively incorporated into translation propagation. During motion compensation, the relative transformation between predicted poses is used to compensate motion-induced distortion in other measurements, while inherent errors in the predicted poses introduce uncertainty in the relative transformation. To tackle these challenges, we represent and propagate the pose on SE(3) manifold, where propagated translation properly accounts for rotational variation. Furthermore, we precisely characterize the relative transformation uncertainty by considering the correlation between predicted poses, and incorporate this uncertainty into the measurement noise during motion compensation. To this end, we propose a LiDAR-inertial odometry (LIO), referred to as SE(3)-LIO, that integrates the proposed IMU propagation and uncertainty-aware motion compensation (UAMC). We validate the effectiveness of SE(3)-LIO on diverse datasets. Our source code and additional material are available at: https://se3-lio.github.io/.

Badllama 3: removing safety finetuning from Llama 3 in minutes

We show that extensive LLM safety fine-tuning is easily subverted when an attacker has access to model weights. We evaluate three state-of-the-art fine-tuning methods-QLoRA, ReFT, and Ortho-and show how algorithmic advances enable constant jailbreaking performance with cuts in FLOPs and optimisation power. We strip safety fine-tuning from Llama 3 8B in one minute and Llama 3 70B in 30 minutes on a single GPU, and sketch ways to reduce this further.

Tele-rehabilitation with online skill transfer and adaptation in $\mathbb{R}^3 \times \mathit{S}^3$

This paper proposes a tele-teaching framework for the domain of robot-assisted tele-rehabilitation. The system connects two robotic manipulators on therapist and patient side via bilateral teleoperation, enabling a therapist to remotely demonstrate rehabilitation exercises that are executed by the patient-side robot. A 6-DoF Dynamical Movement Primitives formulation is employed to jointly encode translational and rotational motions in $\mathbb{R}^3 \times \mathit{S}^3$ space, ensuring accurate trajectory reproduction. The framework supports smooth transitions between therapist-led guidance and patient passive training, while allowing adaptive adjustment of motion. Experiments with 7-DoF manipulators demonstrate the feasibility of the approach, highlighting its potential for personalized and remotely supervised rehabilitation.

3-DUSSS: 3-Dimensional Ultrasonic Self Supervised Segmentation

This study introduces a novel self-supervised learning approach for volumetric segmentation of defect indications captured by phased array ultrasonic testing data from Carbon Fiber Reinforced Polymers (CFRPs). By employing this self-supervised method, defect segmentation is achieved automatically without the need for labelled training data or examples of defects. The approach has been tested using artificially induced defects, including back-drilled holes and Polytetrafluoroethylene (PTFE) inserts, to mimic different defect responses. Additionally, it has been evaluated on stepped geometries with varying thickness, demonstrating impressive generalization across various test scenarios. Minimal preprocessing requirements are needed, with no removal of geometric features or Time-Compensated Gain (TCG) necessary for applying the methodology. The model's performance was evaluated for defect detection, in-plane and through-thickness localisation, as well as defect sizing. All defects were consistently detected with thresholding and different processing steps able to remove false positive indications for a 100% detection accuracy. Defect sizing aligns with the industrial standard 6 dB amplitude drop method, with a Mean Absolute Error (MAE) of 1.41 mm. In-plane and through-thickness localisation yielded comparable results, with MAEs of 0.37 and 0.26 mm, respectively. Visualisations are provided to illustrate how this approach can be utilised to generate digital twins of components.

A^3: Towards Advertising Aesthetic Assessment

Advertising images significantly impact commercial conversion rates and brand equity, yet current evaluation methods rely on subjective judgments, lacking scalability, standardized criteria, and interpretability. To address these challenges, we present A^3 (Advertising Aesthetic Assessment), a comprehensive framework encompassing four components: a paradigm (A^3-Law), a dataset (A^3-Dataset), a multimodal large language model (A^3-Align), and a benchmark (A^3-Bench). Central to A^3 is a theory-driven paradigm, A^3-Law, comprising three hierarchical stages: (1) Perceptual Attention, evaluating perceptual image signals for their ability to attract attention; (2) Formal Interest, assessing formal composition of image color and spatial layout in evoking interest; and (3) Desire Impact, measuring desire evocation from images and their persuasive impact. Building on A^3-Law, we construct A^3-Dataset with 120K instruction-response pairs from 30K advertising images, each richly annotated with multi-dimensional labels and Chain-of-Thought (CoT) rationales. We further develop A^3-Align, trained under A^3-Law with CoT-guided learning on A^3-Dataset. Extensive experiments on A^3-Bench demonstrate that A^3-Align achieves superior alignment with A^3-Law compared to existing models, and this alignment generalizes well to quality advertisement selection and prescriptive advertisement critique, indicating its potential for broader deployment. Dataset, code, and models can be found at: https://github.com/euleryuan/A3-Align.

Theory and Explicit Design of a Path Planner for an SE(3) Robot

We consider path planning for a rigid spatial robot with 6 degrees of freedom (6 DOFs), moving amidst polyhedral obstacles. A correct, complete and practical path planner for such a robot has never been achieved, although this is widely recognized as a key challenge in robotics. This paper provides a complete "explicit" design, down to explicit geometric primitives that are easily implementable. Our design is within an algorithmic framework for path planners, called Soft Subdivision Search (SSS). The framework is based on the twin foundations of $\epsilon$-exactness and soft predicates, which are critical for rigorous numerical implementations. The practicality of SSS has been previously demonstrated for various robots including 5-DOF spatial robots. In this paper, we solve several significant technical challenges for SE(3) robots: (1) We first ensure the correct theory by proving a general form of the Fundamental Theorem of the SSS theory. We prove this within an axiomatic framework, thus making it easy for future applications of this theory. (2) One component of $SE(3) = R^3 \times SO(3)$ is the non-Euclidean, non-orientable space SO(3). We design a novel topologically correct data structure for SO(3). Using the concept of subdivision charts and atlases for SO(3), we can now carry out subdivision of SO(3). (3) The geometric problem of collision detection takes place in $R^3$, via the footprint map. Unlike sampling-based approaches, we must reason with the notion of footprints of configuration boxes, which is much harder to characterize. Exploiting the theory of soft predicates, we design suitable approximate footprints which, when combined with the highly effective feature-set technique, lead to soft predicates. (4) Finally, we make the underlying geometric computation "explicit", i.e., avoiding a general solver of polynomial systems, in order to allow a direct implementation.

F$^3$Set: Towards Analyzing Fast, Frequent, and Fine-grained Events from Videos

Analyzing Fast, Frequent, and Fine-grained (F$^3$) events presents a significant challenge in video analytics and multi-modal LLMs. Current methods struggle to identify events that satisfy all the F$^3$ criteria with high accuracy due to challenges such as motion blur and subtle visual discrepancies. To advance research in video understanding, we introduce F$^3$Set, a benchmark that consists of video datasets for precise F$^3$ event detection. Datasets in F$^3$Set are characterized by their extensive scale and comprehensive detail, usually encompassing over 1,000 event types with precise timestamps and supporting multi-level granularity. Currently, F$^3$Set contains several sports datasets, and this framework may be extended to other applications as well. We evaluated popular temporal action understanding methods on F$^3$Set, revealing substantial challenges for existing techniques. Additionally, we propose a new method, F$^3$ED, for F$^3$ event detections, achieving superior performance. The dataset, model, and benchmark code are available at https://github.com/F3Set/F3Set.

Distortion Bounds of Subdivision Models for SO(3)

In the subdivision approach to robot path planning, we need to subdivide the configuration space of a robot into nice cells to perform various computations. For a rigid spatial robot, this configuration space is $SE(3)=\mathbb{R}^3\times SO(3)$. The subdivision of $\mathbb{R}^3$ is standard but so far, there are no global subdivision schemes for $SO(3)$. We recently introduced a representation for $SO(3)$ suitable for subdivision. This paper investigates the distortion of the natural metric on $SO(3)$ caused by our representation. The proper framework for this study lies in the Riemannian geometry of $SO(3)$, enabling us to obtain sharp distortion bounds.