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T-AutoML: Automated Machine Learning for Lesion Segmentation using Transformers in 3D Medical Imaging

Nov 15, 2021
Dong Yang, Andriy Myronenko, Xiaosong Wang, Ziyue Xu, Holger R. Roth, Daguang Xu

* Accepted at ICCV 2021 

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Accounting for Dependencies in Deep Learning Based Multiple Instance Learning for Whole Slide Imaging

Nov 01, 2021
Andriy Myronenko, Ziyue Xu, Dong Yang, Holger Roth, Daguang Xu

* MICCAI 2021 

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Improving Pneumonia Localization via Cross-Attention on Medical Images and Reports

Oct 06, 2021
Riddhish Bhalodia, Ali Hatamizadeh, Leo Tam, Ziyue Xu, Xiaosong Wang, Evrim Turkbey, Daguang Xu

* Published at MICCAI 2021 

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Federated Whole Prostate Segmentation in MRI with Personalized Neural Architectures

Jul 16, 2021
Holger R. Roth, Dong Yang, Wenqi Li, Andriy Myronenko, Wentao Zhu, Ziyue Xu, Xiaosong Wang, Daguang Xu

* MICCAI 2021 accepted 

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FedGL: Federated Graph Learning Framework with Global Self-Supervision

May 07, 2021
Chuan Chen, Weibo Hu, Ziyue Xu, Zibin Zheng

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Information Bottleneck Attribution for Visual Explanations of Diagnosis and Prognosis

Apr 07, 2021
Ugur Demir, Ismail Irmakci, Elif Keles, Ahmet Topcu, Ziyue Xu, Concetto Spampinato, Sachin Jambawalikar, Evrim Turkbey, Baris Turkbey, Ulas Bagci

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Self-supervised Image-text Pre-training With Mixed Data In Chest X-rays

Mar 30, 2021
Xiaosong Wang, Ziyue Xu, Leo Tam, Dong Yang, Daguang Xu

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Federated Semi-Supervised Learning for COVID Region Segmentation in Chest CT using Multi-National Data from China, Italy, Japan

Nov 23, 2020
Dong Yang, Ziyue Xu, Wenqi Li, Andriy Myronenko, Holger R. Roth, Stephanie Harmon, Sheng Xu, Baris Turkbey, Evrim Turkbey, Xiaosong Wang, Wentao Zhu, Gianpaolo Carrafiello, Francesca Patella, Maurizio Cariati, Hirofumi Obinata, Hitoshi Mori, Kaku Tamura, Peng An, Bradford J. Wood, Daguang Xu

* Accepted with minor revision to Medical Image Analysis 

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Learning Image Labels On-the-fly for Training Robust Classification Models

Oct 02, 2020
Xiaosong Wang, Ziyue Xu, Dong Yang, Leo Tam, Holger Roth, Daguang Xu

* v2: Minor Corrections 

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Going to Extremes: Weakly Supervised Medical Image Segmentation

Sep 25, 2020
Holger R Roth, Dong Yang, Ziyue Xu, Xiaosong Wang, Daguang Xu

* 13 pages, 6 figures, 1 table 

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ScribbleBox: Interactive Annotation Framework for Video Object Segmentation

Aug 22, 2020
Bowen Chen, Huan Ling, Xiaohui Zeng, Gao Jun, Ziyue Xu, Sanja Fidler

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GANDALF: Generative Adversarial Networks with Discriminator-Adaptive Loss Fine-tuning for Alzheimer's Disease Diagnosis from MRI

Aug 10, 2020
Hoo-Chang Shin, Alvin Ihsani, Ziyue Xu, Swetha Mandava, Sharath Turuvekere Sreenivas, Christopher Forster, Jiook Cha, Alzheimer's Disease Neuroimaging Initiative

* Accepted for publication at the MICCAI 2020 conference 

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LAMP: Large Deep Nets with Automated Model Parallelism for Image Segmentation

Jun 26, 2020
Wentao Zhu, Can Zhao, Wenqi Li, Holger Roth, Ziyue Xu, Daguang Xu

* MICCAI 2020 Early Accepted paper. Code is available\footnote{

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Searching Learning Strategy with Reinforcement Learning for 3D Medical Image Segmentation

Jun 10, 2020
Dong Yang, Holger Roth, Ziyue Xu, Fausto Milletari, Ling Zhang, Daguang Xu

* Published at MICCAI 2019 
* 9 pages, 1 figures 

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Enhancing Foreground Boundaries for Medical Image Segmentation

May 29, 2020
Dong Yang, Holger Roth, Xiaosong Wang, Ziyue Xu, Andriy Myronenko, Daguang Xu

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Capsules for Biomedical Image Segmentation

Apr 09, 2020
Rodney LaLonde, Ziyue Xu, Sanjay Jain, Ulas Bagci

* Extension of the non-archival Capsules of Object Segmentation with experiments on both clinical and pre-clinical pathological lung segmentation. arXiv admin note: substantial text overlap with arXiv:1804.04241 

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When Radiology Report Generation Meets Knowledge Graph

Feb 19, 2020
Yixiao Zhang, Xiaosong Wang, Ziyue Xu, Qihang Yu, Alan Yuille, Daguang Xu

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NeurReg: Neural Registration and Its Application to Image Segmentation

Oct 04, 2019
Wentao Zhu, Andriy Myronenko, Ziyue Xu, Wenqi Li, Holger Roth, Yufang Huang, Fausto Milletari, Daguang Xu

* WACV 2020 first round early accept; supplementary; code will be released soon under NVIDIA open source; demos 

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Cardiac Segmentation of LGE MRI with Noisy Labels

Oct 02, 2019
Holger Roth, Wentao Zhu, Dong Yang, Ziyue Xu, Daguang Xu

* Accepted at the MICCAI Workshop Statistical Atlases and Computational Modeling of the Heart (STACOM), MS-CMRSeg 2019: Multi-sequence Cardiac MR Segmentation Challenge, Shenzen, China 

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Weakly supervised segmentation from extreme points

Oct 02, 2019
Holger Roth, Ling Zhang, Dong Yang, Fausto Milletari, Ziyue Xu, Xiaosong Wang, Daguang Xu

* Accepted at the MICCAI Workshop for Large-scale Annotation of Biomedical data and Expert Label Synthesis, Shenzen, China, 2019 

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Correlation via synthesis: end-to-end nodule image generation and radiogenomic map learning based on generative adversarial network

Jul 08, 2019
Ziyue Xu, Xiaosong Wang, Hoo-Chang Shin, Dong Yang, Holger Roth, Fausto Milletari, Ling Zhang, Daguang Xu

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When Unseen Domain Generalization is Unnecessary? Rethinking Data Augmentation

Jun 12, 2019
Ling Zhang, Xiaosong Wang, Dong Yang, Thomas Sanford, Stephanie Harmon, Baris Turkbey, Holger Roth, Andriy Myronenko, Daguang Xu, Ziyue Xu

* 9 pages, 3 figure 

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Standardized Assessment of Automatic Segmentation of White Matter Hyperintensities and Results of the WMH Segmentation Challenge

Apr 01, 2019
Hugo J. Kuijf, J. Matthijs Biesbroek, Jeroen de Bresser, Rutger Heinen, Simon Andermatt, Mariana Bento, Matt Berseth, Mikhail Belyaev, M. Jorge Cardoso, Adri脿 Casamitjana, D. Louis Collins, Mahsa Dadar, Achilleas Georgiou, Mohsen Ghafoorian, Dakai Jin, April Khademi, Jesse Knight, Hongwei Li, Xavier Llad贸, Miguel Luna, Qaiser Mahmood, Richard McKinley, Alireza Mehrtash, S茅bastien Ourselin, Bo-yong Park, Hyunjin Park, Sang Hyun Park, Simon Pezold, Elodie Puybareau, Leticia Rittner, Carole H. Sudre, Sergi Valverde, Ver贸nica Vilaplana, Roland Wiest, Yongchao Xu, Ziyue Xu, Guodong Zeng, Jianguo Zhang, Guoyan Zheng, Christopher Chen, Wiesje van der Flier, Frederik Barkhof, Max A. Viergever, Geert Jan Biessels

* Accepted for publication in IEEE Transactions on Medical Imaging 

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Interactive segmentation of medical images through fully convolutional neural networks

Mar 19, 2019
Tomas Sakinis, Fausto Milletari, Holger Roth, Panagiotis Korfiatis, Petro Kostandy, Kenneth Philbrick, Zeynettin Akkus, Ziyue Xu, Daguang Xu, Bradley J. Erickson

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CT-Realistic Lung Nodule Simulation from 3D Conditional Generative Adversarial Networks for Robust Lung Segmentation

Jun 11, 2018
Dakai Jin, Ziyue Xu, Youbao Tang, Adam P. Harrison, Daniel J. Mollura

* MICCAI 2018 

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White matter hyperintensity segmentation from T1 and FLAIR images using fully convolutional neural networks enhanced with residual connections

Mar 19, 2018
Dakai Jin, Ziyue Xu, Adam P. Harrison, Daniel J. Mollura

* IEEE International Symposium on Biomedical Imaging (ISBI) 

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Pathological Pulmonary Lobe Segmentation from CT Images using Progressive Holistically Nested Neural Networks and Random Walker

Aug 15, 2017
Kevin George, Adam P. Harrison, Dakai Jin, Ziyue Xu, Daniel J. Mollura

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Progressive and Multi-Path Holistically Nested Neural Networks for Pathological Lung Segmentation from CT Images

Jun 12, 2017
Adam P. Harrison, Ziyue Xu, Kevin George, Le Lu, Ronald M. Summers, Daniel J. Mollura

* Proc. MICCAI (2017); pp 621-629 
* 8 Pages, 4 figures, MICCAI 2007 

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