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Convolutional neural network models for cancer type prediction based on gene expression

Jun 18, 2019
Milad Mostavi, Yu-Chiao Chiu, Yufei Huang, Yidong Chen

* 34 pages, 5 figures, This paper was presented at ICIBM June, 2019 at Ohio Columbus, and will be published in BMC Genomics journal. Keywords: Deep Learning; Convolutional Neural Networks, The Cancer Genome Atlas; Cancer type prediction; Cancer gene markers; Breast cancer subtype prediction 

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Asynchronous "Events" are Better For Motion Estimation

Apr 24, 2019
Yuhu Guo, Han Xiao, Yidong Chen, Xiaodong Shi

* Submitted at IJCAI 2019 

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Multi-Perspective Neural Architecture for Recommendation System

Jul 12, 2018
Han Xiao, Yidong Chen, Xiaodong Shi


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GSAE: an autoencoder with embedded gene-set nodes for genomics functional characterization

May 21, 2018
Hung-I Harry Chen, Yu-Chiao Chiu, Tinghe Zhang, Songyao Zhang, Yufei Huang, Yidong Chen

* Accepted for presentation in the International Conference on Intelligent Biology and Medicine (ICIBM 2018) at Los Angeles, CA, USA. Currently under consideration for publication in a Supplement Issue of BMC Systems Biology 

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Predicting drug response of tumors from integrated genomic profiles by deep neural networks

May 20, 2018
Yu-Chiao Chiu, Hung-I Harry Chen, Tinghe Zhang, Songyao Zhang, Aparna Gorthi, Li-Ju Wang, Yufei Huang, Yidong Chen

* Accepted for presentation in the International Conference on Intelligent Biology and Medicine (ICIBM 2018) at Los Angeles, CA, USA. Currently under consideration for publication in a Supplement Issue of BMC Genomics 

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Hungarian Layer: Logics Empowered Neural Architecture

May 17, 2018
Han Xiao, Yidong Chen, Xiaodong Shi

* This is the draft submitting to ICML 2018. You could expect the final version, which is more perfect 

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Deep Semantic Role Labeling with Self-Attention

Dec 05, 2017
Zhixing Tan, Mingxuan Wang, Jun Xie, Yidong Chen, Xiaodong Shi

* Accepted by AAAI-2018 

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