Get our free extension to see links to code for papers anywhere online!

Chrome logo Add to Chrome

Firefox logo Add to Firefox

Picture for Tom Vercauteren

A self-supervised learning strategy for postoperative brain cavity segmentation simulating resections


May 24, 2021
Fernando Pérez-García, Reuben Dorent, Michele Rizzi, Francesco Cardinale, Valerio Frazzini, Vincent Navarro, Caroline Essert, Irène Ollivier, Tom Vercauteren, Rachel Sparks, John S. Duncan, Sébastien Ourselin

* To be published in the International Journal of Computer Assisted Radiology and Surgery (IJCARS) - Special issue MICCAI 2020 

  Access Paper or Ask Questions

Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlas


May 04, 2021
AdriĂ  Casamitjana, Marco Lorenzi, Sebastiano Ferraris, Loc Peter, Marc Modat, Allison Stevens, Bruce Fischl, Tom Vercauteren, Juan Eugenio Iglesias


  Access Paper or Ask Questions

MIDeepSeg: Minimally Interactive Segmentation of Unseen Objects from Medical Images Using Deep Learning


Apr 25, 2021
Xiangde Luo, Guotai Wang, Tao Song, Jingyang Zhang, Michael Aertsen, Jan Deprest, Sebastien Ourselin, Tom Vercauteren, Shaoting Zhang

* 17 pages, 16 figures 

  Access Paper or Ask Questions

Zero-shot super-resolution with a physically-motivated downsampling kernel for endomicroscopy


Mar 25, 2021
Agnieszka Barbara Szczotka, Dzhoshkun Ismail Shakir, Matthew J. Clarkson, Stephen P. Pereira, Tom Vercauteren

* IEEE Transactions on Medical Imaging, 2021 

  Access Paper or Ask Questions

MONAIfbs: MONAI-based fetal brain MRI deep learning segmentation


Mar 21, 2021
Marta B. M. Ranzini, Lucas Fidon, SĂ©bastien Ourselin, Marc Modat, Tom Vercauteren

* Abstract accepted at IEEE International Symposium on Biomedical Imaging (ISBI) 2021 

  Access Paper or Ask Questions

Intrapapillary Capillary Loop Classification in Magnification Endoscopy: Open Dataset and Baseline Methodology


Feb 19, 2021
Luis C. Garcia-Peraza-Herrera, Martin Everson, Laurence Lovat, Hsiu-Po Wang, Wen Lun Wang, Rehan Haidry, Danail Stoyanov, Sebastien Ourselin, Tom Vercauteren

* Accepted by IJCARS 

  Access Paper or Ask Questions

Image Compositing for Segmentation of Surgical Tools without Manual Annotations


Feb 18, 2021
Luis C. Garcia-Peraza-Herrera, Lucas Fidon, Claudia D'Ettorre, Danail Stoyanov, Tom Vercauteren, Sebastien Ourselin

* Accepted by IEEE TMI 

  Access Paper or Ask Questions

Scale factor point spread function matching: Beyond aliasing in image resampling


Jan 16, 2021
M. Jorge Cardoso, Marc Modat, Tom Vercauteren, Sebastien Ourselin

* Published in MICCAI 2015 

  Access Paper or Ask Questions

Morphological Change Forecasting for Prostate Glands using Feature-based Registration and Kernel Density Extrapolation


Jan 16, 2021
Qianye Yang, Tom Vercauteren, Yunguan Fu, Francesco Giganti, Nooshin Ghavami, Vasilis Stavrinides, Caroline Moore, Matt Clarkson, Dean Barratt, Yipeng Hu

* Accepted by ISBI 2021 

  Access Paper or Ask Questions

Active Annotation of Informative Overlapping Frames in Video Mosaicking Applications


Dec 30, 2020
Loic Peter, Marcel Tella-Amo, Dzhoshkun Ismail Shakir, Jan Deprest, Sebastien Ourselin, Juan Eugenio Iglesias, Tom Vercauteren


  Access Paper or Ask Questions

Explainable-by-design Semi-Supervised Representation Learning for COVID-19 Diagnosis from CT Imaging


Dec 02, 2020
Abel Díaz Berenguer, Hichem Sahli, Boris Joukovsky, Maryna Kvasnytsia, Ine Dirks, Mitchel Alioscha-Perez, Nikos Deligiannis, Panagiotis Gonidakis, Sebastián Amador Sánchez, Redona Brahimetaj, Evgenia Papavasileiou, Jonathan Cheung-Wai Chana, Fei Li, Shangzhen Song, Yixin Yang, Sofie Tilborghs, Siri Willems, Tom Eelbode, Jeroen Bertels, Dirk Vandermeulen, Frederik Maes, Paul Suetens, Lucas Fidon, Tom Vercauteren, David Robben, Arne Brys, Dirk Smeets, Bart Ilsen, Nico Buls, Nina Watté, Johan de Mey, Annemiek Snoeckx, Paul M. Parizel, Julien Guiot, Louis Deprez, Paul Meunier, Stefaan Gryspeerdt, Kristof De Smet, Bart Jansen, Jef Vandemeulebroucke


  Access Paper or Ask Questions

DeepReg: a deep learning toolkit for medical image registration


Nov 04, 2020
Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary M. C. Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu

* Accepted in The Journal of Open Source Software (JOSS) 

  Access Paper or Ask Questions

Generalized Wasserstein Dice Score, Distributionally Robust Deep Learning, and Ranger for brain tumor segmentation: BraTS 2020 challenge


Nov 03, 2020
Lucas Fidon, Sebastien Ourselin, Tom Vercauteren

* MICCAI 2020 BrainLes Workshop. Our method ranked fourth out of the 693 registered teams for the segmentation task of the BraTS 2020 challenge 

  Access Paper or Ask Questions

High-throughput molecular imaging via deep learning enabled Raman spectroscopy


Sep 28, 2020
Conor C. Horgan, Magnus Jensen, Anika Nagelkerke, Jean-Phillipe St-Pierre, Tom Vercauteren, Molly M. Stevens, Mads S. Bergholt


  Access Paper or Ask Questions

CA-Net: Comprehensive Attention Convolutional Neural Networks for Explainable Medical Image Segmentation


Sep 23, 2020
Ran Gu, Guotai Wang, Tao Song, Rui Huang, Michael Aertsen, Jan Deprest, SĂ©bastien Ourselin, Tom Vercauteren, Shaoting Zhang


  Access Paper or Ask Questions

Learning joint segmentation of tissues and brain lesions from task-specific hetero-modal domain-shifted datasets


Sep 08, 2020
Reuben Dorent, Thomas Booth, Wenqi Li, Carole H. Sudre, Sina Kafiabadi, Jorge Cardoso, Sebastien Ourselin, Tom Vercauteren

* MIDL 2019 special issue - Medical Image Analysis 

  Access Paper or Ask Questions

Real-Time Segmentation of Non-Rigid Surgical Tools based on Deep Learning and Tracking


Sep 07, 2020
Luis C. GarcĂ­a-Peraza-Herrera, Wenqi Li, Caspar Gruijthuijsen, Alain Devreker, George Attilakos, Jan Deprest, Emmanuel Vander Poorten, Danail Stoyanov, Tom Vercauteren, SĂ©bastien Ourselin

* Accepted in CARE Workshop, held in conjunction with MICCAI 2016 

  Access Paper or Ask Questions

Longitudinal Image Registration with Temporal-order and Subject-specificity Discrimination


Aug 29, 2020
Qianye Yang, Yunguan Fu, Francesco Giganti, Nooshin Ghavami, Qingchao Chen, J. Alison Noble, Tom Vercauteren, Dean Barratt, Yipeng Hu

* Accepted at MICCAI 2020 

  Access Paper or Ask Questions

Comparative study of deep learning methods for the automatic segmentation of lung, lesion and lesion type in CT scans of COVID-19 patients


Aug 21, 2020
Sofie Tilborghs, Ine Dirks, Lucas Fidon, Siri Willems, Tom Eelbode, Jeroen Bertels, Bart Ilsen, Arne Brys, Adriana Dubbeldam, Nico Buls, Panagiotis Gonidakis, Sebastián Amador Sánchez, Annemiek Snoeckx, Paul M. Parizel, Johan de Mey, Dirk Vandermeulen, Tom Vercauteren, David Robben, Dirk Smeets, Frederik Maes, Jef Vandemeulebroucke, Paul Suetens

* Updated acknowledgments 

  Access Paper or Ask Questions

Deep Placental Vessel Segmentation for Fetoscopic Mosaicking


Jul 08, 2020
Sophia Bano, Francisco Vasconcelos, Luke M. Shepherd, Emmanuel Vander Poorten, Tom Vercauteren, Sebastien Ourselin, Anna L. David, Jan Deprest, Danail Stoyanov

* Accepted at MICCAI 2020 

  Access Paper or Ask Questions

Scribble-based Domain Adaptation via Co-segmentation


Jul 07, 2020
Reuben Dorent, Samuel Joutard, Jonathan Shapey, Sotirios Bisdas, Neil Kitchen, Robert Bradford, Shakeel Saeed, Marc Modat, Sebastien Ourselin, Tom Vercauteren

* Accepted at MICCAI 2020 

  Access Paper or Ask Questions

Uncertainty-Guided Efficient Interactive Refinement of Fetal Brain Segmentation from Stacks of MRI Slices


Jul 02, 2020
Guotai Wang, Michael Aertsen, Jan Deprest, Sebastien Ourselin, Tom Vercauteren, Shaoting Zhang

* 10 pages, 4 figures, Accepted by MICCAI 2020 

  Access Paper or Ask Questions

SGD with Hardness Weighted Sampling for Distributionally Robust Deep Learning


Jan 08, 2020
Lucas Fidon, Sebastien Ourselin, Tom Vercauteren


  Access Paper or Ask Questions

Learning from Irregularly Sampled Data for Endomicroscopy Super-resolution: A Comparative Study of Sparse and Dense Approaches


Nov 29, 2019
Agnieszka Barbara Szczotka, Dzhoshkun Ismail Shakir, DanieleRavi, Matthew J. Clarkson, Stephen P. Pereira, Tom Vercauteren


  Access Paper or Ask Questions

CAI4CAI: The Rise of Contextual Artificial Intelligence in Computer Assisted Interventions


Oct 20, 2019
Tom Vercauteren, Mathias Unberath, Nicolas Padoy, Nassir Navab


  Access Paper or Ask Questions

Improved MR to CT synthesis for PET/MR attenuation correction using Imitation Learning


Aug 27, 2019
Kerstin Kläser, Thomas Varsavsky, Pawel Markiewicz, Tom Vercauteren, David Atkinson, Kris Thielemans, Brian Hutton, M Jorge Cardoso, Sebastien Ourselin

* Aceppted at SASHIMI2019 

  Access Paper or Ask Questions

Hetero-Modal Variational Encoder-Decoder for Joint Modality Completion and Segmentation


Jul 25, 2019
Reuben Dorent, Samuel Joutard, Marc Modat, SĂ©bastien Ourselin, Tom Vercauteren

* Accepted at MICCAI 2019 

  Access Paper or Ask Questions

Deep Sequential Mosaicking of Fetoscopic Videos


Jul 15, 2019
Sophia Bano, Francisco Vasconcelos, Marcel Tella Amo, George Dwyer, Caspar Gruijthuijsen, Jan Deprest, Sebastien Ourselin, Emmanuel Vander Poorten, Tom Vercauteren, Danail Stoyanov

* Accepted at MICCAI 2019 

  Access Paper or Ask Questions