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Evaluating the Robustness of Self-Supervised Learning in Medical Imaging


May 14, 2021
Fernando Navarro, Christopher Watanabe, Suprosanna Shit, Anjany Sekuboyina, Jan C. Peeken, Stephanie E. Combs, Bjoern H. Menze


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METGAN: Generative Tumour Inpainting and Modality Synthesis in Light Sheet Microscopy


Apr 23, 2021
Izabela Horvath, Johannes C. Paetzold, Oliver Schoppe, Rami Al-Maskari, Ivan Ezhov, Suprosanna Shit, Hongwei Li, Ali Ertuerk, Bjoern H. Menze


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Are we using appropriate segmentation metrics? Identifying correlates of human expert perception for CNN training beyond rolling the DICE coefficient


Mar 10, 2021
Florian Kofler, Ivan Ezhov, Fabian Isensee, Fabian Balsiger, Christoph Berger, Maximilian Koerner, Johannes Paetzold, Hongwei Li, Suprosanna Shit, Richard McKinley, Spyridon Bakas, Claus Zimmer, Donna Ankerst, Jan Kirschke, Benedikt Wiestler, Bjoern H. Menze


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The MICCAI Hackathon on reproducibility, diversity, and selection of papers at the MICCAI conference


Mar 04, 2021
Fabian Balsiger, Alain Jungo, Naren Akash R J, Jianan Chen, Ivan Ezhov, Shengnan Liu, Jun Ma, Johannes C. Paetzold, Vishva Saravanan R, Anjany Sekuboyina, Suprosanna Shit, Yannick Suter, Moshood Yekini, Guodong Zeng, Markus Rempfler


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A comparison of automatic multi-tissue segmentation methods of the human fetal brain using the FeTA Dataset


Oct 29, 2020
Kelly Payette, Priscille de Dumast, Hamza Kebiri, Ivan Ezhov, Johannes C. Paetzold, Suprosanna Shit, Asim Iqbal, Romesa Khan, Raimund Kottke, Patrice Grehten, Hui Ji, Levente Lanczi, Marianna Nagy, Monika Beresova, Thi Dao Nguyen, Giancarlo Natalucci, Theofanis Karayannis, Bjoern Menze, Meritxell Bach Cuadra, Andras Jakab

* Paper currently under review 

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Cranial Implant Prediction using Low-Resolution 3D Shape Completion and High-Resolution 2D Refinement


Sep 27, 2020
Amirhossein Bayat, Suprosanna Shit, Adrian Kilian, Jürgen T. Liechtenstein, Jan S. Kirschke, Bjoern H. Menze


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Complex Grey Matter Structure Segmentation in Brains via Deep Learning: Example of the Claustrum


Aug 08, 2020
Hongwei Li, Aurore Menegaux, Felix JB Bäuerlein, Suprosanna Shit, Benita Schmitz-Koep, Christian Sorg, Bjoern Menze, Dennis Hedderich

* submitted to a journal 

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A distance-based loss for smooth and continuous skin layer segmentation in optoacoustic images


Jul 10, 2020
Stefan Gerl, Johannes C. Paetzold, Hailong He, Ivan Ezhov, Suprosanna Shit, Florian Kofler, Amirhossein Bayat, Giles Tetteh, Vasilis Ntziachristos, Bjoern Menze

* Accepted at International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2020 

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Red-GAN: Attacking class imbalance via conditioned generation. Yet another medical imaging perspective


Apr 30, 2020
Ahmad B Qasim, Ivan Ezhov, Suprosanna Shit, Oliver Schoppe, Johannes C Paetzold, Anjany Sekuboyina, Florian Kofler, Jana Lipkova, Hongwei Li, Bjoern Menze


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clDice -- a Topology-Preserving Loss Function for Tubular Structure Segmentation


Mar 29, 2020
Suprosanna Shit, Johannes C. Paetzold, Anjany Sekuboyina, Andrey Zhylka, Ivan Ezhov, Alexander Unger, Josien P. W. Pluim, Giles Tetteh, Bjoern H. Menze

* * The authors Suprosanna Shit and Johannes C. Paetzold contributed equally to the work 

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Implicit Neural Solver for Time-dependent Linear PDEs with Convergence Guarantee


Oct 09, 2019
Suprosanna Shit, Abinav Ravi Venkatakrishnan, Ivan Ezhov, Jana Lipkova, Marie Piraud, Bjoern Menze

* Accepted in NeurIPS 2019 Workshop on Machine Learning with Guarantees 

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Shape-Aware Complementary-Task Learning for Multi-Organ Segmentation


Aug 14, 2019
Fernando Navarro, Suprosanna Shit, Ivan Ezhov, Johannes Paetzold, Andrei Gafita, Jan Peeken, Stephanie Combs, Bjoern Menze

* Accepted in MLMI Workshop 2019 MICCAI 

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Neural parameters estimation for brain tumor growth modeling


Jul 01, 2019
Ivan Ezhov, Jana Lipkova, Suprosanna Shit, Florian Kofler, Nore Collomb, Benjamin Lemasson, Emmanuel Barbier, Bjoern Menze


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