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MammoDL: Mammographic Breast Density Estimation using Federated Learning



Keshava Katti , Ramya Muthukrishnan , Angelina Heyler , Sarthak Pati , Aprupa Alahari , Michael Sanborn , Emily F. Conant , Christopher Scott , Stacey Winham , Celine Vachon , Pratik Chaudhari , Despina Kontos , Spyridon Bakas

* Breast Cancer Risk, Digital Mammography, Breast Density, Deep Learning, Machine Learning, Federated Learning, OpenFL 

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Federated Learning Enables Big Data for Rare Cancer Boundary Detection



Sarthak Pati , Ujjwal Baid , Brandon Edwards , Micah Sheller , Shih-Han Wang , G Anthony Reina , Patrick Foley , Alexey Gruzdev , Deepthi Karkada , Christos Davatzikos , Chiharu Sako , Satyam Ghodasara , Michel Bilello , Suyash Mohan , Philipp Vollmuth , Gianluca Brugnara , Chandrakanth J Preetha , Felix Sahm , Klaus Maier-Hein , Maximilian Zenk , Martin Bendszus , Wolfgang Wick , Evan Calabrese , Jeffrey Rudie , Javier Villanueva-Meyer , Soonmee Cha , Madhura Ingalhalikar , Manali Jadhav , Umang Pandey , Jitender Saini , John Garrett , Matthew Larson , Robert Jeraj , Stuart Currie , Russell Frood , Kavi Fatania , Raymond Y Huang , Ken Chang , Carmen Balana , Jaume Capellades , Josep Puig , Johannes Trenkler , Josef Pichler , Georg Necker , Andreas Haunschmidt , Stephan Meckel , Gaurav Shukla , Spencer Liem , Gregory S Alexander , Joseph Lombardo , Joshua D Palmer , Adam E Flanders , Adam P Dicker , Haris I Sair , Craig K Jones , Archana Venkataraman , Meirui Jiang , Tiffany Y So , Cheng Chen , Pheng Ann Heng , Qi Dou , Michal Kozubek , Filip Lux , Jan Michálek , Petr Matula , Miloš Keřkovský , Tereza Kopřivová , Marek Dostál , Václav Vybíhal , Michael A Vogelbaum , J Ross Mitchell , Joaquim Farinhas , Joseph A Maldjian , Chandan Ganesh Bangalore Yogananda , Marco C Pinho , Divya Reddy , James Holcomb , Benjamin C Wagner , Benjamin M Ellingson , Timothy F Cloughesy , Catalina Raymond , Talia Oughourlian , Akifumi Hagiwara , Chencai Wang , Minh-Son To , Sargam Bhardwaj , Chee Chong , Marc Agzarian , Alexandre Xavier Falcão , Samuel B Martins , Bernardo C A Teixeira , Flávia Sprenger , David Menotti , Diego R Lucio , Pamela LaMontagne , Daniel Marcus , Benedikt Wiestler , Florian Kofler , Ivan Ezhov , Marie Metz , Rajan Jain , Matthew Lee , Yvonne W Lui , Richard McKinley , Johannes Slotboom , Piotr Radojewski , Raphael Meier , Roland Wiest , Derrick Murcia , Eric Fu , Rourke Haas , John Thompson , David Ryan Ormond , Chaitra Badve , Andrew E Sloan , Vachan Vadmal , Kristin Waite , Rivka R Colen , Linmin Pei , Murat Ak , Ashok Srinivasan , J Rajiv Bapuraj , Arvind Rao , Nicholas Wang , Ota Yoshiaki , Toshio Moritani , Sevcan Turk , Joonsang Lee , Snehal Prabhudesai , Fanny Morón , Jacob Mandel , Konstantinos Kamnitsas , Ben Glocker , Luke V M Dixon , Matthew Williams , Peter Zampakis , Vasileios Panagiotopoulos , Panagiotis Tsiganos , Sotiris Alexiou , Ilias Haliassos , Evangelia I Zacharaki , Konstantinos Moustakas , Christina Kalogeropoulou , Dimitrios M Kardamakis , Yoon Seong Choi , Seung-Koo Lee , Jong Hee Chang , Sung Soo Ahn , Bing Luo , Laila Poisson , Ning Wen , Pallavi Tiwari , Ruchika Verma , Rohan Bareja , Ipsa Yadav , Jonathan Chen , Neeraj Kumar , Marion Smits , Sebastian R van der Voort , Ahmed Alafandi , Fatih Incekara , Maarten MJ Wijnenga , Georgios Kapsas , Renske Gahrmann , Joost W Schouten , Hendrikus J Dubbink , Arnaud JPE Vincent , Martin J van den Bent , Pim J French , Stefan Klein , Yading Yuan , Sonam Sharma , Tzu-Chi Tseng , Saba Adabi , Simone P Niclou , Olivier Keunen , Ann-Christin Hau , Martin Vallières , David Fortin , Martin Lepage , Bennett Landman , Karthik Ramadass , Kaiwen Xu , Silky Chotai , Lola B Chambless , Akshitkumar Mistry , Reid C Thompson , Yuriy Gusev , Krithika Bhuvaneshwar , Anousheh Sayah , Camelia Bencheqroun , Anas Belouali , Subha Madhavan , Thomas C Booth , Alysha Chelliah , Marc Modat , Haris Shuaib , Carmen Dragos , Aly Abayazeed , Kenneth Kolodziej , Michael Hill , Ahmed Abbassy , Shady Gamal , Mahmoud Mekhaimar , Mohamed Qayati , Mauricio Reyes , Ji Eun Park , Jihye Yun , Ho Sung Kim , Abhishek Mahajan , Mark Muzi , Sean Benson , Regina G H Beets-Tan , Jonas Teuwen , Alejandro Herrera-Trujillo , Maria Trujillo , William Escobar , Ana Abello , Jose Bernal , Jhon Gómez , Joseph Choi , Stephen Baek , Yusung Kim , Heba Ismael , Bryan Allen , John M Buatti , Aikaterini Kotrotsou , Hongwei Li , Tobias Weiss , Michael Weller , Andrea Bink , Bertrand Pouymayou , Hassan F Shaykh , Joel Saltz , Prateek Prasanna , Sampurna Shrestha , Kartik M Mani , David Payne , Tahsin Kurc , Enrique Pelaez , Heydy Franco-Maldonado , Francis Loayza , Sebastian Quevedo , Pamela Guevara , Esteban Torche , Cristobal Mendoza , Franco Vera , Elvis Ríos , Eduardo López , Sergio A Velastin , Godwin Ogbole , Dotun Oyekunle , Olubunmi Odafe-Oyibotha , Babatunde Osobu , Mustapha Shu'aibu , Adeleye Dorcas , Mayowa Soneye , Farouk Dako , Amber L Simpson , Mohammad Hamghalam , Jacob J Peoples , Ricky Hu , Anh Tran , Danielle Cutler , Fabio Y Moraes , Michael A Boss , James Gimpel , Deepak Kattil Veettil , Kendall Schmidt , Brian Bialecki , Sailaja Marella , Cynthia Price , Lisa Cimino , Charles Apgar , Prashant Shah , Bjoern Menze , Jill S Barnholtz-Sloan , Jason Martin , Spyridon Bakas

* federated learning, deep learning, convolutional neural network, segmentation, brain tumor, glioma, glioblastoma, FeTS, BraTS 

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Federated Learning for the Classification of Tumor Infiltrating Lymphocytes



Ujjwal Baid , Sarthak Pati , Tahsin M. Kurc , Rajarsi Gupta , Erich Bremer , Shahira Abousamra , Siddhesh P. Thakur , Joel H. Saltz , Spyridon Bakas


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The RSNA-ASNR-MICCAI BraTS 2021 Benchmark on Brain Tumor Segmentation and Radiogenomic Classification



Ujjwal Baid , Satyam Ghodasara , Michel Bilello , Suyash Mohan , Evan Calabrese , Errol Colak , Keyvan Farahani , Jayashree Kalpathy-Cramer , Felipe C. Kitamura , Sarthak Pati , Luciano M. Prevedello , Jeffrey D. Rudie , Chiharu Sako , Russell T. Shinohara , Timothy Bergquist , Rong Chai , James Eddy , Julia Elliott , Walter Reade , Thomas Schaffter , Thomas Yu , Jiaxin Zheng , BraTS Annotators , Christos Davatzikos , John Mongan , Christopher Hess , Soonmee Cha , Javier Villanueva-Meyer , John B. Freymann , Justin S. Kirby , Benedikt Wiestler , Priscila Crivellaro , Rivka R. Colen , Aikaterini Kotrotsou , Daniel Marcus , Mikhail Milchenko , Arash Nazeri , Hassan Fathallah-Shaykh , Roland Wiest , Andras Jakab , Marc-Andre Weber , Abhishek Mahajan , Bjoern Menze , Adam E. Flanders , Spyridon Bakas

* 17 pages, 2 figures, 1 table 

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The Federated Tumor Segmentation (FeTS) Challenge



Sarthak Pati , Ujjwal Baid , Maximilian Zenk , Brandon Edwards , Micah Sheller , G. Anthony Reina , Patrick Foley , Alexey Gruzdev , Jason Martin , Shadi Albarqouni , Yong Chen , Russell Taki Shinohara , Annika Reinke , David Zimmerer , John B. Freymann , Justin S. Kirby , Christos Davatzikos , Rivka R. Colen , Aikaterini Kotrotsou , Daniel Marcus , Mikhail Milchenko , Arash Nazeri , Hassan Fathallah-Shaykh , Roland Wiest , Andras Jakab , Marc-Andre Weber , Abhishek Mahajan , Lena Maier-Hein , Jens Kleesiek , Bjoern Menze , Klaus Maier-Hein , Spyridon Bakas


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OpenFL: An open-source framework for Federated Learning



G Anthony Reina , Alexey Gruzdev , Patrick Foley , Olga Perepelkina , Mansi Sharma , Igor Davidyuk , Ilya Trushkin , Maksim Radionov , Aleksandr Mokrov , Dmitry Agapov , Jason Martin , Brandon Edwards , Micah J. Sheller , Sarthak Pati , Prakash Narayana Moorthy , Shih-han Wang , Prashant Shah , Spyridon Bakas


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GaNDLF: A Generally Nuanced Deep Learning Framework for Scalable End-to-End Clinical Workflows in Medical Imaging



Sarthak Pati , Siddhesh P. Thakur , Megh Bhalerao , Ujjwal Baid , Caleb Grenko , Brandon Edwards , Micah Sheller , Jose Agraz , Bhakti Baheti , Vishnu Bashyam , Parth Sharma , Babak Haghighi , Aimilia Gastounioti , Mark Bergman , Bjoern Menze , Despina Kontos , Christos Davatzikos , Spyridon Bakas


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Accurate and Robust Alignment of Variable-stained Histologic Images Using a General-purpose Greedy Diffeomorphic Registration Tool



Ludovic Venet , Sarthak Pati , Paul Yushkevich , Spyridon Bakas


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