Integrating Single-Cell Foundation Models with Graph Neural Networks for Drug Response Prediction

In this study, we propose an innovative methodology for predicting Cancer Drug Response (CDR) through the integration of the scGPT foundation model within the DeepCDR model. Our approach utilizes scGPT to generate embeddings from gene expression data, which are then used as gene expression input data for DeepCDR. The experimental findings demonstrate the efficacy of this scGPT-based method in outperforming previous related works, including the original DeepCDR model and the scFoundation-based model. This study highlights the potential of scGPT embeddings to enhance the accuracy of CDR predictions and offers a promising alternative to existing approaches.

MathPhys-Guided Coarse-to-Fine Anomaly Synthesis with SQE-Driven Bi-Level Optimization for Anomaly Detection

Anomaly detection is a crucial task in computer vision, yet collecting real-world defect images is inherently difficult due to the rarity and unpredictability of anomalies. Consequently, researchers have turned to synthetic methods for training data augmentation. However, existing synthetic strategies (e.g., naive cut-and-paste or inpainting) overlook the underlying physical causes of defects, leading to inconsistent, low-fidelity anomalies that hamper model generalization to real-world complexities. In this thesis, we introduced a novel pipeline that generates synthetic anomalies through Math-Physics model guidance, refines them via a Coarse-to-Fine approach and employs a bi-level optimization strategy with a Synthesis Quality Estimator(SQE). By incorporating physical modeling of cracks, corrosion, and deformation, our method produces realistic defect masks, which are subsequently enhanced in two phases. The first stage (npcF) enforces a PDE-based consistency to achieve a globally coherent anomaly structure, while the second stage (npcF++) further improves local fidelity using wavelet transforms and boundary synergy blocks. Additionally, we leverage SQE-driven weighting, ensuring that high-quality synthetic samples receive greater emphasis during training. To validate our approach, we conducted comprehensive experiments on three widely adopted industrial anomaly detection benchmarks: MVTec AD, VisA, and BTAD. Across these datasets, the proposed pipeline achieves state-of-the-art (SOTA) results in both image-AUROC and pixel-AUROC, confirming the effectiveness of our MaPhC2F and BiSQAD.

Pushing DSP-Free Coherent Interconnect to the Last Inch by Optically Analog Signal Processing

To support the boosting interconnect capacity of the AI-related data centers, novel techniques enabled high-speed and low-cost optics are continuously emerging. When the baud rate approaches 200 GBaud per lane, the bottle-neck of traditional intensity modulation direct detection (IM-DD) architectures becomes increasingly evident. The simplified coherent solutions are widely discussed and considered as one of the most promising candidates. In this paper, a novel coherent architecture based on self-homodyne coherent detection and optically analog signal processing (OASP) is demonstrated. Proved by experiment, the first DSP-free baud-rate sampled 64-GBaud QPSK/16-QAM receptions are achieved, with BERs of 1e-6 and 2e-2, respectively. Even with 1-km fiber link propagation, the BER for QPSK reception remains at 3.6e-6. When an ultra-simple 1-sps SISO filter is utilized, the performance degradation of the proposed scheme is less than 1 dB compared to legacy DSP-based coherent reception. The proposed results pave the way for the ultra-high-speed coherent optical interconnections, offering high power and cost efficiency.

PhysVLM: Enabling Visual Language Models to Understand Robotic Physical Reachability

Understanding the environment and a robot's physical reachability is crucial for task execution. While state-of-the-art vision-language models (VLMs) excel in environmental perception, they often generate inaccurate or impractical responses in embodied visual reasoning tasks due to a lack of understanding of robotic physical reachability. To address this issue, we propose a unified representation of physical reachability across diverse robots, i.e., Space-Physical Reachability Map (S-P Map), and PhysVLM, a vision-language model that integrates this reachability information into visual reasoning. Specifically, the S-P Map abstracts a robot's physical reachability into a generalized spatial representation, independent of specific robot configurations, allowing the model to focus on reachability features rather than robot-specific parameters. Subsequently, PhysVLM extends traditional VLM architectures by incorporating an additional feature encoder to process the S-P Map, enabling the model to reason about physical reachability without compromising its general vision-language capabilities. To train and evaluate PhysVLM, we constructed a large-scale multi-robot dataset, Phys100K, and a challenging benchmark, EQA-phys, which includes tasks for six different robots in both simulated and real-world environments. Experimental results demonstrate that PhysVLM outperforms existing models, achieving a 14\% improvement over GPT-4o on EQA-phys and surpassing advanced embodied VLMs such as RoboMamba and SpatialVLM on the RoboVQA-val and OpenEQA benchmarks. Additionally, the S-P Map shows strong compatibility with various VLMs, and its integration into GPT-4o-mini yields a 7.1\% performance improvement.

MIGA: Mutual Information-Guided Attack on Denoising Models for Semantic Manipulation

Deep learning-based denoising models have been widely employed in vision tasks, functioning as filters to eliminate noise while retaining crucial semantic information. Additionally, they play a vital role in defending against adversarial perturbations that threaten downstream tasks. However, these models can be intrinsically susceptible to adversarial attacks due to their dependence on specific noise assumptions. Existing attacks on denoising models mainly aim at deteriorating visual clarity while neglecting semantic manipulation, rendering them either easily detectable or limited in effectiveness. In this paper, we propose Mutual Information-Guided Attack (MIGA), the first method designed to directly attack deep denoising models by strategically disrupting their ability to preserve semantic content via adversarial perturbations. By minimizing the mutual information between the original and denoised images, a measure of semantic similarity. MIGA forces the denoiser to produce perceptually clean yet semantically altered outputs. While these images appear visually plausible, they encode systematically distorted semantics, revealing a fundamental vulnerability in denoising models. These distortions persist in denoised outputs and can be quantitatively assessed through downstream task performance. We propose new evaluation metrics and systematically assess MIGA on four denoising models across five datasets, demonstrating its consistent effectiveness in disrupting semantic fidelity. Our findings suggest that denoising models are not always robust and can introduce security risks in real-world applications.

LightPlanner: Unleashing the Reasoning Capabilities of Lightweight Large Language Models in Task Planning

In recent years, lightweight large language models (LLMs) have garnered significant attention in the robotics field due to their low computational resource requirements and suitability for edge deployment. However, in task planning -- particularly for complex tasks that involve dynamic semantic logic reasoning -- lightweight LLMs have underperformed. To address this limitation, we propose a novel task planner, LightPlanner, which enhances the performance of lightweight LLMs in complex task planning by fully leveraging their reasoning capabilities. Unlike conventional planners that use fixed skill templates, LightPlanner controls robot actions via parameterized function calls, dynamically generating parameter values. This approach allows for fine-grained skill control and improves task planning success rates in complex scenarios. Furthermore, we introduce hierarchical deep reasoning. Before generating each action decision step, LightPlanner thoroughly considers three levels: action execution (feedback verification), semantic parsing (goal consistency verification), and parameter generation (parameter validity verification). This ensures the correctness of subsequent action controls. Additionally, we incorporate a memory module to store historical actions, thereby reducing context length and enhancing planning efficiency for long-term tasks. We train the LightPlanner-1.5B model on our LightPlan-40k dataset, which comprises 40,000 action controls across tasks with 2 to 13 action steps. Experiments demonstrate that our model achieves the highest task success rate despite having the smallest number of parameters. In tasks involving spatial semantic reasoning, the success rate exceeds that of ReAct by 14.9 percent. Moreover, we demonstrate LightPlanner's potential to operate on edge devices.

FLARE: A Framework for Stellar Flare Forecasting using Stellar Physical Properties and Historical Records

Stellar flare events are critical observational samples for astronomical research; however, recorded flare events remain limited. Stellar flare forecasting can provide additional flare event samples to support research efforts. Despite this potential, no specialized models for stellar flare forecasting have been proposed to date. In this paper, we present extensive experimental evidence demonstrating that both stellar physical properties and historical flare records are valuable inputs for flare forecasting tasks. We then introduce FLARE (Forecasting Light-curve-based Astronomical Records via features Ensemble), the first-of-its-kind large model specifically designed for stellar flare forecasting. FLARE integrates stellar physical properties and historical flare records through a novel Soft Prompt Module and Residual Record Fusion Module. Our experiments on the publicly available Kepler light curve dataset demonstrate that FLARE achieves superior performance compared to other methods across all evaluation metrics. Finally, we validate the forecast capability of our model through a comprehensive case study.

Zero Token-Driven Deep Thinking in LLMs: Unlocking the Full Potential of Existing Parameters via Cyclic Refinement

Resource limitations often constrain the parameter counts of Large Language Models (LLMs), hindering their performance. While existing methods employ parameter sharing to reuse the same parameter set under fixed budgets, such approaches typically force each layer to assume multiple roles with a predetermined number of iterations, restricting efficiency and adaptability. In this work, we propose the Zero Token Transformer (ZTT), which features a head-tail decoupled parameter cycling method. We disentangle the first (head) and last (tail) layers from parameter cycling and iteratively refine only the intermediate layers. Furthermore, we introduce a Zero-Token Mechanism, an internal architectural component rather than an input token, to guide layer-specific computation. At each cycle, the model retrieves a zero token (with trainable key values) from a Zero-Token Pool, integrating it alongside regular tokens in the attention mechanism. The corresponding attention scores not only reflect each layer's computational importance but also enable dynamic early exits without sacrificing overall model accuracy. Our approach achieves superior performance under tight parameter budgets, effectively reduces computational overhead via early exits, and can be readily applied to fine-tune existing pre-trained models for enhanced efficiency and adaptability.

Systematic Outliers in Large Language Models

Outliers have been widely observed in Large Language Models (LLMs), significantly impacting model performance and posing challenges for model compression. Understanding the functionality and formation mechanisms of these outliers is critically important. Existing works, however, largely focus on reducing the impact of outliers from an algorithmic perspective, lacking an in-depth investigation into their causes and roles. In this work, we provide a detailed analysis of the formation process, underlying causes, and functions of outliers in LLMs. We define and categorize three types of outliers-activation outliers, weight outliers, and attention outliers-and analyze their distributions across different dimensions, uncovering inherent connections between their occurrences and their ultimate influence on the attention mechanism. Based on these observations, we hypothesize and explore the mechanisms by which these outliers arise and function, demonstrating through theoretical derivations and experiments that they emerge due to the self-attention mechanism's softmax operation. These outliers act as implicit context-aware scaling factors within the attention mechanism. As these outliers stem from systematic influences, we term them systematic outliers. Our study not only enhances the understanding of Transformer-based LLMs but also shows that structurally eliminating outliers can accelerate convergence and improve model compression. The code is avilable at https://github.com/an-yongqi/systematic-outliers.

Label Anything: An Interpretable, High-Fidelity and Prompt-Free Annotator

Learning-based street scene semantic understanding in autonomous driving (AD) has advanced significantly recently, but the performance of the AD model is heavily dependent on the quantity and quality of the annotated training data. However, traditional manual labeling involves high cost to annotate the vast amount of required data for training robust model. To mitigate this cost of manual labeling, we propose a Label Anything Model (denoted as LAM), serving as an interpretable, high-fidelity, and prompt-free data annotator. Specifically, we firstly incorporate a pretrained Vision Transformer (ViT) to extract the latent features. On top of ViT, we propose a semantic class adapter (SCA) and an optimization-oriented unrolling algorithm (OptOU), both with a quite small number of trainable parameters. SCA is proposed to fuse ViT-extracted features to consolidate the basis of the subsequent automatic annotation. OptOU consists of multiple cascading layers and each layer contains an optimization formulation to align its output with the ground truth as closely as possible, though which OptOU acts as being interpretable rather than learning-based blackbox nature. In addition, training SCA and OptOU requires only a single pre-annotated RGB seed image, owing to their small volume of learnable parameters. Extensive experiments clearly demonstrate that the proposed LAM can generate high-fidelity annotations (almost 100% in mIoU) for multiple real-world datasets (i.e., Camvid, Cityscapes, and Apolloscapes) and CARLA simulation dataset.