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Marinka Zitnik

Department of Biomedical Informatics, Harvard Medical School, Harvard Data Science, Broad Institute of MIT and Harvard, Harvard University, Boston, MA, USA

OpenXAI: Towards a Transparent Evaluation of Model Explanations



Chirag Agarwal , Eshika Saxena , Satyapriya Krishna , Martin Pawelczyk , Nari Johnson , Isha Puri , Marinka Zitnik , Himabindu Lakkaraju

* Preprint 

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Self-Supervised Contrastive Pre-Training For Time Series via Time-Frequency Consistency



Xiang Zhang , Ziyuan Zhao , Theodoros Tsiligkaridis , Marinka Zitnik

* Under review; the anonymouse code repo link will be made non-anonymous after acceptance; 21 pages (13 pages main paper + 8 pages supplementary materials) 

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Multimodal Learning on Graphs for Disease Relation Extraction



Yucong Lin , Keming Lu , Sheng Yu , Tianxi Cai , Marinka Zitnik


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Rethinking Stability for Attribution-based Explanations



Chirag Agarwal , Nari Johnson , Martin Pawelczyk , Satyapriya Krishna , Eshika Saxena , Marinka Zitnik , Himabindu Lakkaraju


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Beyond Low Earth Orbit: Biomonitoring, Artificial Intelligence, and Precision Space Health



Ryan T. Scott , Erik L. Antonsen , Lauren M. Sanders , Jaden J. A. Hastings , Seung-min Park , Graham Mackintosh , Robert J. Reynolds , Adrienne L. Hoarfrost , Aenor Sawyer , Casey S. Greene , Benjamin S. Glicksberg , Corey A. Theriot , Daniel C. Berrios , Jack Miller , Joel Babdor , Richard Barker , Sergio E. Baranzini , Afshin Beheshti , Stuart Chalk , Guillermo M. Delgado-Aparicio , Melissa Haendel , Arif A. Hamid , Philip Heller , Daniel Jamieson , Katelyn J. Jarvis , John Kalantari , Kia Khezeli , Svetlana V. Komarova , Matthieu Komorowski , Prachi Kothiyal , Ashish Mahabal , Uri Manor , Hector Garcia Martin , Christopher E. Mason , Mona Matar , George I. Mias , Jerry G. Myers, Jr. , Charlotte Nelson , Jonathan Oribello , Patricia Parsons-Wingerter , R. K. Prabhu , Amina Ann Qutub , Jon Rask , Amanda Saravia-Butler , Suchi Saria , Nitin Kumar Singh , Frank Soboczenski , Michael Snyder , Karthik Soman , David Van Valen , Kasthuri Venkateswaran , Liz Warren , Liz Worthey , Jason H. Yang , Marinka Zitnik , Sylvain V. Costes

* 31 pages, 4 figures 

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Beyond Low Earth Orbit: Biological Research, Artificial Intelligence, and Self-Driving Labs



Lauren M. Sanders , Jason H. Yang , Ryan T. Scott , Amina Ann Qutub , Hector Garcia Martin , Daniel C. Berrios , Jaden J. A. Hastings , Jon Rask , Graham Mackintosh , Adrienne L. Hoarfrost , Stuart Chalk , John Kalantari , Kia Khezeli , Erik L. Antonsen , Joel Babdor , Richard Barker , Sergio E. Baranzini , Afshin Beheshti , Guillermo M. Delgado-Aparicio , Benjamin S. Glicksberg , Casey S. Greene , Melissa Haendel , Arif A. Hamid , Philip Heller , Daniel Jamieson , Katelyn J. Jarvis , Svetlana V. Komarova , Matthieu Komorowski , Prachi Kothiyal , Ashish Mahabal , Uri Manor , Christopher E. Mason , Mona Matar , George I. Mias , Jack Miller , Jerry G. Myers Jr. , Charlotte Nelson , Jonathan Oribello , Seung-min Park , Patricia Parsons-Wingerter , R. K. Prabhu , Robert J. Reynolds , Amanda Saravia-Butler , Suchi Saria , Aenor Sawyer , Nitin Kumar Singh , Frank Soboczenski , Michael Snyder , Karthik Soman , Corey A. Theriot , David Van Valen , Kasthuri Venkateswaran , Liz Warren , Liz Worthey , Marinka Zitnik , Sylvain V. Costes

* 28 pages, 4 figures 

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Graph-Guided Network for Irregularly Sampled Multivariate Time Series



Xiang Zhang , Marko Zeman , Theodoros Tsiligkaridis , Marinka Zitnik


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Towards a Rigorous Theoretical Analysis and Evaluation of GNN Explanations



Chirag Agarwal , Marinka Zitnik , Himabindu Lakkaraju


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Deep Contextual Learners for Protein Networks



Michelle M. Li , Marinka Zitnik


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Representation Learning for Networks in Biology and Medicine: Advancements, Challenges, and Opportunities



Michelle M. Li , Kexin Huang , Marinka Zitnik


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