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Distributionally Robust Segmentation of Abnormal Fetal Brain 3D MRI


Aug 09, 2021
Lucas Fidon, Michael Aertsen, Nada Mufti, Thomas Deprest, Doaa Emam, Frédéric Guffens, Ernst Schwartz, Michael Ebner, Daniela Prayer, Gregor Kasprian, Anna L. David, Andrew Melbourne, Sébastien Ourselin, Jan Deprest, Georg Langs, Tom Vercauteren

* Accepted at the MICCAI 2021 Perinatal, Preterm and Paediatric Image Analysis (PIPPI) workshop 

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Label-set Loss Functions for Partial Supervision: Application to Fetal Brain 3D MRI Parcellation


Jul 09, 2021
Lucas Fidon, Michael Aertsen, Doaa Emam, Nada Mufti, Frédéric Guffens, Thomas Deprest, Philippe Demaerel, Anna L. David, Andrew Melbourne, Sébastien Ourselin, Jan Deprest, Tom Vercauteren

* Accepted at MICCAI 2021 

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MONAIfbs: MONAI-based fetal brain MRI deep learning segmentation


Mar 21, 2021
Marta B. M. Ranzini, Lucas Fidon, Sébastien Ourselin, Marc Modat, Tom Vercauteren

* Abstract accepted at IEEE International Symposium on Biomedical Imaging (ISBI) 2021 

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Image Compositing for Segmentation of Surgical Tools without Manual Annotations


Feb 18, 2021
Luis C. Garcia-Peraza-Herrera, Lucas Fidon, Claudia D'Ettorre, Danail Stoyanov, Tom Vercauteren, Sebastien Ourselin

* Accepted by IEEE TMI 

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Explainable-by-design Semi-Supervised Representation Learning for COVID-19 Diagnosis from CT Imaging


Dec 02, 2020
Abel Díaz Berenguer, Hichem Sahli, Boris Joukovsky, Maryna Kvasnytsia, Ine Dirks, Mitchel Alioscha-Perez, Nikos Deligiannis, Panagiotis Gonidakis, Sebastián Amador Sánchez, Redona Brahimetaj, Evgenia Papavasileiou, Jonathan Cheung-Wai Chana, Fei Li, Shangzhen Song, Yixin Yang, Sofie Tilborghs, Siri Willems, Tom Eelbode, Jeroen Bertels, Dirk Vandermeulen, Frederik Maes, Paul Suetens, Lucas Fidon, Tom Vercauteren, David Robben, Arne Brys, Dirk Smeets, Bart Ilsen, Nico Buls, Nina Watté, Johan de Mey, Annemiek Snoeckx, Paul M. Parizel, Julien Guiot, Louis Deprez, Paul Meunier, Stefaan Gryspeerdt, Kristof De Smet, Bart Jansen, Jef Vandemeulebroucke


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Generalized Wasserstein Dice Score, Distributionally Robust Deep Learning, and Ranger for brain tumor segmentation: BraTS 2020 challenge


Nov 03, 2020
Lucas Fidon, Sebastien Ourselin, Tom Vercauteren

* MICCAI 2020 BrainLes Workshop. Our method ranked fourth out of the 693 registered teams for the segmentation task of the BraTS 2020 challenge 

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Comparative study of deep learning methods for the automatic segmentation of lung, lesion and lesion type in CT scans of COVID-19 patients


Aug 21, 2020
Sofie Tilborghs, Ine Dirks, Lucas Fidon, Siri Willems, Tom Eelbode, Jeroen Bertels, Bart Ilsen, Arne Brys, Adriana Dubbeldam, Nico Buls, Panagiotis Gonidakis, Sebastián Amador Sánchez, Annemiek Snoeckx, Paul M. Parizel, Johan de Mey, Dirk Vandermeulen, Tom Vercauteren, David Robben, Dirk Smeets, Frederik Maes, Jef Vandemeulebroucke, Paul Suetens

* Updated acknowledgments 

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SGD with Hardness Weighted Sampling for Distributionally Robust Deep Learning


Jan 08, 2020
Lucas Fidon, Sebastien Ourselin, Tom Vercauteren


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NiftyNet: a deep-learning platform for medical imaging


Oct 16, 2017
Eli Gibson, Wenqi Li, Carole Sudre, Lucas Fidon, Dzhoshkun I. Shakir, Guotai Wang, Zach Eaton-Rosen, Robert Gray, Tom Doel, Yipeng Hu, Tom Whyntie, Parashkev Nachev, Marc Modat, Dean C. Barratt, Sébastien Ourselin, M. Jorge Cardoso, Tom Vercauteren

* Wenqi Li and Eli Gibson contributed equally to this work. M. Jorge Cardoso and Tom Vercauteren contributed equally to this work. 26 pages, 6 figures; Update includes additional applications, updated author list and formatting for journal submission 

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Generalised Wasserstein Dice Score for Imbalanced Multi-class Segmentation using Holistic Convolutional Networks


Aug 29, 2017
Lucas Fidon, Wenqi Li, Luis C. Garcia-Peraza-Herrera, Jinendra Ekanayake, Neil Kitchen, Sebastien Ourselin, Tom Vercauteren

* Accepted as an oral presentation at the MICCAI 2017 Brain Lesion (BrainLes) Workshop 

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On the Compactness, Efficiency, and Representation of 3D Convolutional Networks: Brain Parcellation as a Pretext Task


Jul 06, 2017
Wenqi Li, Guotai Wang, Lucas Fidon, Sebastien Ourselin, M. Jorge Cardoso, Tom Vercauteren

* Paper accepted at IPMI 2017 

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ToolNet: Holistically-Nested Real-Time Segmentation of Robotic Surgical Tools


Jul 04, 2017
Luis C. Garcia-Peraza-Herrera, Wenqi Li, Lucas Fidon, Caspar Gruijthuijsen, Alain Devreker, George Attilakos, Jan Deprest, Emmanuel Vander Poorten, Danail Stoyanov, Tom Vercauteren, Sebastien Ourselin

* Paper accepted at IROS 2017 

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Scalable multimodal convolutional networks for brain tumour segmentation


Jun 25, 2017
Lucas Fidon, Wenqi Li, Luis C. Garcia-Peraza-Herrera, Jinendra Ekanayake, Neil Kitchen, Sebastien Ourselin, Tom Vercauteren

* Paper accepted at MICCAI 2017 

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