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Partial supervision for the FeTA challenge 2021


Nov 03, 2021
Lucas Fidon, Michael Aertsen, Suprosanna Shit, Philippe Demaerel, Sébastien Ourselin, Jan Deprest, Tom Vercauteren

* Accepted as a poster at the MICCAI 2021 Perinatal, Preterm and Paediatric Image Analysis (PIPPI) workshop 

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Interactive Segmentation via Deep Learning and B-Spline Explicit Active Surfaces


Oct 25, 2021
Helena Williams, João Pedrosa, Laura Cattani, Susanne Housmans, Tom Vercauteren, Jan Deprest, Jan D'hooge

* MICCAI 2021. Lecture Notes in Computer Science, vol 12901. Springer, Cham 
* 11 pages, 3 figures, 2 tables 

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Distributionally Robust Segmentation of Abnormal Fetal Brain 3D MRI


Aug 09, 2021
Lucas Fidon, Michael Aertsen, Nada Mufti, Thomas Deprest, Doaa Emam, Frédéric Guffens, Ernst Schwartz, Michael Ebner, Daniela Prayer, Gregor Kasprian, Anna L. David, Andrew Melbourne, Sébastien Ourselin, Jan Deprest, Georg Langs, Tom Vercauteren

* Accepted at the MICCAI 2021 Perinatal, Preterm and Paediatric Image Analysis (PIPPI) workshop 

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Label-set Loss Functions for Partial Supervision: Application to Fetal Brain 3D MRI Parcellation


Jul 09, 2021
Lucas Fidon, Michael Aertsen, Doaa Emam, Nada Mufti, Frédéric Guffens, Thomas Deprest, Philippe Demaerel, Anna L. David, Andrew Melbourne, Sébastien Ourselin, Jan Deprest, Tom Vercauteren

* Accepted at MICCAI 2021 

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Autonomous Robotic Endoscope Control based on Semantically Rich Instructions


Jul 05, 2021
Caspar Gruijthuijsen, Luis C. Garcia-Peraza-Herrera, Gianni Borghesan, Dominiek Reynaerts, Jan Deprest, Sebastien Ourselin, Tom Vercauteren, Emmanuel Vander Poorten

* Caspar Gruijthuijsen and Luis C. Garcia-Peraza-Herrera contributed equally to this work 

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FetReg: Placental Vessel Segmentation and Registration in Fetoscopy Challenge Dataset


Jun 16, 2021
Sophia Bano, Alessandro Casella, Francisco Vasconcelos, Sara Moccia, George Attilakos, Ruwan Wimalasundera, Anna L. David, Dario Paladini, Jan Deprest, Elena De Momi, Leonardo S. Mattos, Danail Stoyanov


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MIDeepSeg: Minimally Interactive Segmentation of Unseen Objects from Medical Images Using Deep Learning


Apr 25, 2021
Xiangde Luo, Guotai Wang, Tao Song, Jingyang Zhang, Michael Aertsen, Jan Deprest, Sebastien Ourselin, Tom Vercauteren, Shaoting Zhang

* 17 pages, 16 figures 

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Active Annotation of Informative Overlapping Frames in Video Mosaicking Applications


Dec 30, 2020
Loic Peter, Marcel Tella-Amo, Dzhoshkun Ismail Shakir, Jan Deprest, Sebastien Ourselin, Juan Eugenio Iglesias, Tom Vercauteren


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CA-Net: Comprehensive Attention Convolutional Neural Networks for Explainable Medical Image Segmentation


Sep 23, 2020
Ran Gu, Guotai Wang, Tao Song, Rui Huang, Michael Aertsen, Jan Deprest, Sébastien Ourselin, Tom Vercauteren, Shaoting Zhang


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Real-Time Segmentation of Non-Rigid Surgical Tools based on Deep Learning and Tracking


Sep 07, 2020
Luis C. García-Peraza-Herrera, Wenqi Li, Caspar Gruijthuijsen, Alain Devreker, George Attilakos, Jan Deprest, Emmanuel Vander Poorten, Danail Stoyanov, Tom Vercauteren, Sébastien Ourselin

* Accepted in CARE Workshop, held in conjunction with MICCAI 2016 

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Deep Placental Vessel Segmentation for Fetoscopic Mosaicking


Jul 08, 2020
Sophia Bano, Francisco Vasconcelos, Luke M. Shepherd, Emmanuel Vander Poorten, Tom Vercauteren, Sebastien Ourselin, Anna L. David, Jan Deprest, Danail Stoyanov

* Accepted at MICCAI 2020 

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Uncertainty-Guided Efficient Interactive Refinement of Fetal Brain Segmentation from Stacks of MRI Slices


Jul 02, 2020
Guotai Wang, Michael Aertsen, Jan Deprest, Sebastien Ourselin, Tom Vercauteren, Shaoting Zhang

* 10 pages, 4 figures, Accepted by MICCAI 2020 

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Deep Sequential Mosaicking of Fetoscopic Videos


Jul 15, 2019
Sophia Bano, Francisco Vasconcelos, Marcel Tella Amo, George Dwyer, Caspar Gruijthuijsen, Jan Deprest, Sebastien Ourselin, Emmanuel Vander Poorten, Tom Vercauteren, Danail Stoyanov

* Accepted at MICCAI 2019 

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Aleatoric uncertainty estimation with test-time augmentation for medical image segmentation with convolutional neural networks


Jul 20, 2018
Guotai Wang, Wenqi Li, Michael Aertsen, Jan Deprest, Sebastien Ourselin, Tom Vercauteren

* 11 pages, 6 figures, submission to CMIG 

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Retrieval and Registration of Long-Range Overlapping Frames for Scalable Mosaicking of In Vivo Fetoscopy


Feb 28, 2018
Loïc Peter, Marcel Tella-Amo, Dzhoshkun Ismail Shakir, George Attilakos, Ruwan Wimalasundera, Jan Deprest, Sébastien Ourselin, Tom Vercauteren

* Accepted for publication in International Journal of Computer Assisted Radiology and Surgery (IJCARS) 

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A Log-Euclidean and Total Variation based Variational Framework for Computational Sonography


Feb 06, 2018
Jyotirmoy Banerjee, Premal A. Patel, Fred Ushakov, Donald Peebles, Jan Deprest, Sebastien Ourselin, David Hawkes, Tom Vercauteren

* SPIE Medical Imaging 2018 

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Automatic segmentation method of pelvic floor levator hiatus in ultrasound using a self-normalising neural network


Dec 18, 2017
Ester Bonmati, Yipeng Hu, Nikhil Sindhwani, Hans Peter Dietz, Jan D'hooge, Dean Barratt, Jan Deprest, Tom Vercauteren


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Interactive Medical Image Segmentation using Deep Learning with Image-specific Fine-tuning


Oct 11, 2017
Guotai Wang, Wenqi Li, Maria A. Zuluaga, Rosalind Pratt, Premal A. Patel, Michael Aertsen, Tom Doel, Anna L. David, Jan Deprest, Sebastien Ourselin, Tom Vercauteren

* 11 pages, 11 figures 

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DeepIGeoS: A Deep Interactive Geodesic Framework for Medical Image Segmentation


Sep 19, 2017
Guotai Wang, Maria A. Zuluaga, Wenqi Li, Rosalind Pratt, Premal A. Patel, Michael Aertsen, Tom Doel, Anna L. David, Jan Deprest, Sebastien Ourselin, Tom Vercauteren

* 14 pages, 15 figures 

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ToolNet: Holistically-Nested Real-Time Segmentation of Robotic Surgical Tools


Jul 04, 2017
Luis C. Garcia-Peraza-Herrera, Wenqi Li, Lucas Fidon, Caspar Gruijthuijsen, Alain Devreker, George Attilakos, Jan Deprest, Emmanuel Vander Poorten, Danail Stoyanov, Tom Vercauteren, Sebastien Ourselin

* Paper accepted at IROS 2017 

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