FREE: The Foundational Semantic Recognition for Modeling Environmental Ecosystems

Modeling environmental ecosystems is critical for the sustainability of our planet, but is extremely challenging due to the complex underlying processes driven by interactions amongst a large number of physical variables. As many variables are difficult to measure at large scales, existing works often utilize a combination of observable features and locally available measurements or modeled values as input to build models for a specific study region and time period. This raises a fundamental question in advancing the modeling of environmental ecosystems: how to build a general framework for modeling the complex relationships amongst various environmental data over space and time? In this paper, we introduce a new framework, FREE, which maps available environmental data into a text space and then converts the traditional predictive modeling task in environmental science to the semantic recognition problem. The proposed FREE framework leverages recent advances in Large Language Models (LLMs) to supplement the original input features with natural language descriptions. This facilitates capturing the data semantics and also allows harnessing the irregularities of input features. When used for long-term prediction, FREE has the flexibility to incorporate newly collected observations to enhance future prediction. The efficacy of FREE is evaluated in the context of two societally important real-world applications, predicting stream water temperature in the Delaware River Basin and predicting annual corn yield in Illinois and Iowa. Beyond the superior predictive performance over multiple baseline methods, FREE is shown to be more data- and computation-efficient as it can be pre-trained on simulated data generated by physics-based models.

Knowledge Guided Representation Learning and Causal Structure Learning in Soil Science

An improved understanding of soil can enable more sustainable land-use practices. Nevertheless, soil is called a complex, living medium due to the complex interaction of different soil processes that limit our understanding of soil. Process-based models and analyzing observed data provide two avenues for improving our understanding of soil processes. Collecting observed data is cost-prohibitive but reflects real-world behavior, while process-based models can be used to generate ample synthetic data which may not be representative of reality. We propose a framework, knowledge-guided representation learning, and causal structure learning (KGRCL), to accelerate scientific discoveries in soil science. The framework improves representation learning for simulated soil processes via conditional distribution matching with observed soil processes. Simultaneously, the framework leverages both observed and simulated data to learn a causal structure among the soil processes. The learned causal graph is more representative of ground truth than other graphs generated from other causal discovery methods. Furthermore, the learned causal graph is leveraged in a supervised learning setup to predict the impact of fertilizer use and changing weather on soil carbon. We present the results in five different locations to show the improvement in the prediction performance in out-of-sample and few-shots setting.

Task-Adaptive Meta-Learning Framework for Advancing Spatial Generalizability

Spatio-temporal machine learning is critically needed for a variety of societal applications, such as agricultural monitoring, hydrological forecast, and traffic management. These applications greatly rely on regional features that characterize spatial and temporal differences. However, spatio-temporal data are often complex and pose several unique challenges for machine learning models: 1) multiple models are needed to handle region-based data patterns that have significant spatial heterogeneity across different locations; 2) local models trained on region-specific data have limited ability to adapt to other regions that have large diversity and abnormality; 3) spatial and temporal variations entangle data complexity that requires more robust and adaptive models; 4) limited spatial-temporal data in real scenarios (e.g., crop yield data is collected only once a year) makes the problems intrinsically challenging. To bridge these gaps, we propose task-adaptive formulations and a model-agnostic meta-learning framework that ensembles regionally heterogeneous data into location-sensitive meta tasks. We conduct task adaptation following an easy-to-hard task hierarchy in which different meta models are adapted to tasks of different difficulty levels. One major advantage of our proposed method is that it improves the model adaptation to a large number of heterogeneous tasks. It also enhances the model generalization by automatically adapting the meta model of the corresponding difficulty level to any new tasks. We demonstrate the superiority of our proposed framework over a diverse set of baselines and state-of-the-art meta-learning frameworks. Our extensive experiments on real crop yield data show the effectiveness of the proposed method in handling spatial-related heterogeneous tasks in real societal applications.

Mini-Batch Learning Strategies for modeling long term temporal dependencies: A study in environmental applications

In many environmental applications, recurrent neural networks (RNNs) are often used to model physical variables with long temporal dependencies. However, due to mini-batch training, temporal relationships between training segments within the batch (intra-batch) as well as between batches (inter-batch) are not considered, which can lead to limited performance. Stateful RNNs aim to address this issue by passing hidden states between batches. Since Stateful RNNs ignore intra-batch temporal dependency, there exists a trade-off between training stability and capturing temporal dependency. In this paper, we provide a quantitative comparison of different Stateful RNN modeling strategies, and propose two strategies to enforce both intra- and inter-batch temporal dependency. First, we extend Stateful RNNs by defining a batch as a temporally ordered set of training segments, which enables intra-batch sharing of temporal information. While this approach significantly improves the performance, it leads to much larger training times due to highly sequential training. To address this issue, we further propose a new strategy which augments a training segment with an initial value of the target variable from the timestep right before the starting of the training segment. In other words, we provide an initial value of the target variable as additional input so that the network can focus on learning changes relative to that initial value. By using this strategy, samples can be passed in any order (mini-batch training) which significantly reduces the training time while maintaining the performance. In demonstrating our approach in hydrological modeling, we observe that the most significant gains in predictive accuracy occur when these methods are applied to state variables whose values change more slowly, such as soil water and snowpack, rather than continuously moving flux variables such as streamflow.

Binary Representation via Jointly Personalized Sparse Hashing

Unsupervised hashing has attracted much attention for binary representation learning due to the requirement of economical storage and efficiency of binary codes. It aims to encode high-dimensional features in the Hamming space with similarity preservation between instances. However, most existing methods learn hash functions in manifold-based approaches. Those methods capture the local geometric structures (i.e., pairwise relationships) of data, and lack satisfactory performance in dealing with real-world scenarios that produce similar features (e.g. color and shape) with different semantic information. To address this challenge, in this work, we propose an effective unsupervised method, namely Jointly Personalized Sparse Hashing (JPSH), for binary representation learning. To be specific, firstly, we propose a novel personalized hashing module, i.e., Personalized Sparse Hashing (PSH). Different personalized subspaces are constructed to reflect category-specific attributes for different clusters, adaptively mapping instances within the same cluster to the same Hamming space. In addition, we deploy sparse constraints for different personalized subspaces to select important features. We also collect the strengths of the other clusters to build the PSH module with avoiding over-fitting. Then, to simultaneously preserve semantic and pairwise similarities in our JPSH, we incorporate the PSH and manifold-based hash learning into the seamless formulation. As such, JPSH not only distinguishes the instances from different clusters, but also preserves local neighborhood structures within the cluster. Finally, an alternating optimization algorithm is adopted to iteratively capture analytical solutions of the JPSH model. Extensive experiments on four benchmark datasets verify that the JPSH outperforms several hashing algorithms on the similarity search task.

Computation Rate Maximization for Multiuser Mobile Edge Computing Systems With Dynamic Energy Arrivals

This paper considers an energy harvesting (EH) based multiuser mobile edge computing (MEC) system, where each user utilizes the harvested energy from renewable energy sources to execute its computation tasks via computation offloading and local computing. Towards maximizing the system's weighted computation rate (i.e., the number of weighted users' computing bits within a finite time horizon) subject to the users' energy causality constraints due to dynamic energy arrivals, the decision for joint computation offloading and local computing over time is optimized {\em over time}. Assuming that the profile of channel state information and dynamic task arrivals at the users is known in advance, the weighted computation rate maximization problem becomes a convex optimization problem. Building on the Lagrange duality method, the well-structured optimal solution is analytically obtained. Both the users' local computing and offloading rates are shown to have a monotonically increasing structure. Numerical results show that the proposed design scheme can achieve a significant performance gain over the alternative benchmark schemes.

Updating the silent speech challenge benchmark with deep learning

The 2010 Silent Speech Challenge benchmark is updated with new results obtained in a Deep Learning strategy, using the same input features and decoding strategy as in the original article. A Word Error Rate of 6.4% is obtained, compared to the published value of 17.4%. Additional results comparing new auto-encoder-based features with the original features at reduced dimensionality, as well as decoding scenarios on two different language models, are also presented. The Silent Speech Challenge archive has been updated to contain both the original and the new auto-encoder features, in addition to the original raw data.