Medical Image Analysis on Left Atrial LGE MRI for Atrial Fibrillation Studies: A Review

Late gadolinium enhancement magnetic resonance imaging (LGE MRI) is commonly used to visualize and quantify left atrial (LA) scars. The position and extent of scars provide important information of the pathophysiology and progression of atrial fibrillation (AF). Hence, LA scar segmentation and quantification from LGE MRI can be useful in computer-assisted diagnosis and treatment stratification of AF patients. Since manual delineation can be time-consuming and subject to intra- and inter-expert variability, automating this computing is highly desired, which nevertheless is still challenging and under-researched. This paper aims to provide a systematic review on computing methods for LA cavity, wall, scar and ablation gap segmentation and quantification from LGE MRI, and the related literature for AF studies. Specifically, we first summarize AF-related imaging techniques, particularly LGE MRI. Then, we review the methodologies of the four computing tasks in detail, and summarize the validation strategies applied in each task. Finally, the possible future developments are outlined, with a brief survey on the potential clinical applications of the aforementioned methods. The review shows that the research into this topic is still in early stages. Although several methods have been proposed, especially for LA segmentation, there is still large scope for further algorithmic developments due to performance issues related to the high variability of enhancement appearance and differences in image acquisition.

AtrialGeneral: Domain Generalization for Left Atrial Segmentation of Multi-Center LGE MRIs

Left atrial (LA) segmentation from late gadolinium enhanced magnetic resonance imaging (LGE MRI) is a crucial step needed for planning the treatment of atrial fibrillation. However, automatic LA segmentation from LGE MRI is still challenging, due to the poor image quality, high variability in LA shapes, and unclear LA boundary. Though deep learning-based methods can provide promising LA segmentation results, they often generalize poorly to unseen domains, such as data from different scanners and/or sites. In this work, we collect 210 LGE MRIs from different centers with different levels of image quality. To evaluate the domain generalization ability of models on the LA segmentation task, we employ four commonly used semantic segmentation networks for the LA segmentation from multi-center LGE MRIs. Besides, we investigate three domain generalization strategies, i.e., histogram matching, mutual information based disentangled representation, and random style transfer, where a simple histogram matching is proved to be most effective.

Learning to Disentangle GAN Fingerprint for Fake Image Attribution

Rapid pace of generative models has brought about new threats to visual forensics such as malicious personation and digital copyright infringement, which promotes works on fake image attribution. Existing works on fake image attribution mainly rely on a direct classification framework. Without additional supervision, the extracted features could include many content-relevant components and generalize poorly. Meanwhile, how to obtain an interpretable GAN fingerprint to explain the decision remains an open question. Adopting a multi-task framework, we propose a GAN Fingerprint Disentangling Network (GFD-Net) to simultaneously disentangle the fingerprint from GAN-generated images and produce a content-irrelevant representation for fake image attribution. A series of constraints are provided to guarantee the stability and discriminability of the fingerprint, which in turn helps content-irrelevant feature extraction. Further, we perform comprehensive analysis on GAN fingerprint, providing some clues about the properties of GAN fingerprint and which factors dominate the fingerprint in GAN architecture. Experiments show that our GFD-Net achieves superior fake image attribution performance in both closed-world and open-world testing. We also apply our method in binary fake image detection and exhibit a significant generalization ability on unseen generators.

CBLUE: A Chinese Biomedical Language Understanding Evaluation Benchmark

Artificial Intelligence (AI), along with the recent progress in biomedical language understanding, is gradually changing medical practice. With the development of biomedical language understanding benchmarks, AI applications are widely used in the medical field. However, most benchmarks are limited to English, which makes it challenging to replicate many of the successes in English for other languages. To facilitate research in this direction, we collect real-world biomedical data and present the first Chinese Biomedical Language Understanding Evaluation (CBLUE) benchmark: a collection of natural language understanding tasks including named entity recognition, information extraction, clinical diagnosis normalization, single-sentence/sentence-pair classification, and an associated online platform for model evaluation, comparison, and analysis. To establish evaluation on these tasks, we report empirical results with the current 11 pre-trained Chinese models, and experimental results show that state-of-the-art neural models perform by far worse than the human ceiling. Our benchmark is released at \url{https://tianchi.aliyun.com/dataset/dataDetail?dataId=95414&lang=en-us}.

Language Tags Matter for Zero-Shot Neural Machine Translation

Multilingual Neural Machine Translation (MNMT) has aroused widespread interest due to its efficiency. An exciting advantage of MNMT models is that they could also translate between unsupervised (zero-shot) language directions. Language tag (LT) strategies are often adopted to indicate the translation directions in MNMT. In this paper, we demonstrate that the LTs are not only indicators for translation directions but also crucial to zero-shot translation qualities. Unfortunately, previous work tends to ignore the importance of LT strategies. We demonstrate that a proper LT strategy could enhance the consistency of semantic representations and alleviate the off-target issue in zero-shot directions. Experimental results show that by ignoring the source language tag (SLT) and adding the target language tag (TLT) to the encoder, the zero-shot translations could achieve a +8 BLEU score difference over other LT strategies in IWSLT17, Europarl, TED talks translation tasks.

Adversarial Option-Aware Hierarchical Imitation Learning

It has been a challenge to learning skills for an agent from long-horizon unannotated demonstrations. Existing approaches like Hierarchical Imitation Learning(HIL) are prone to compounding errors or suboptimal solutions. In this paper, we propose Option-GAIL, a novel method to learn skills at long horizon. The key idea of Option-GAIL is modeling the task hierarchy by options and train the policy via generative adversarial optimization. In particular, we propose an Expectation-Maximization(EM)-style algorithm: an E-step that samples the options of expert conditioned on the current learned policy, and an M-step that updates the low- and high-level policies of agent simultaneously to minimize the newly proposed option-occupancy measurement between the expert and the agent. We theoretically prove the convergence of the proposed algorithm. Experiments show that Option-GAIL outperforms other counterparts consistently across a variety of tasks.

UniKeyphrase: A Unified Extraction and Generation Framework for Keyphrase Prediction

Keyphrase Prediction (KP) task aims at predicting several keyphrases that can summarize the main idea of the given document. Mainstream KP methods can be categorized into purely generative approaches and integrated models with extraction and generation. However, these methods either ignore the diversity among keyphrases or only weakly capture the relation across tasks implicitly. In this paper, we propose UniKeyphrase, a novel end-to-end learning framework that jointly learns to extract and generate keyphrases. In UniKeyphrase, stacked relation layer and bag-of-words constraint are proposed to fully exploit the latent semantic relation between extraction and generation in the view of model structure and training process, respectively. Experiments on KP benchmarks demonstrate that our joint approach outperforms mainstream methods by a large margin.

Contrastive Learning for Many-to-many Multilingual Neural Machine Translation

Existing multilingual machine translation approaches mainly focus on English-centric directions, while the non-English directions still lag behind. In this work, we aim to build a many-to-many translation system with an emphasis on the quality of non-English language directions. Our intuition is based on the hypothesis that a universal cross-language representation leads to better multilingual translation performance. To this end, we propose mRASP2, a training method to obtain a single unified multilingual translation model. mRASP2 is empowered by two techniques: a) a contrastive learning scheme to close the gap among representations of different languages, and b) data augmentation on both multiple parallel and monolingual data to further align token representations. For English-centric directions, mRASP2 outperforms existing best unified model and achieves competitive or even better performance than the pre-trained and fine-tuned model mBART on tens of WMT's translation directions. For non-English directions, mRASP2 achieves an improvement of average 10+ BLEU compared with the multilingual Transformer baseline. Code, data and trained models are available at https://github.com/PANXiao1994/mRASP2.

Personalized Transformer for Explainable Recommendation

Personalization of natural language generation plays a vital role in a large spectrum of tasks, such as explainable recommendation, review summarization and dialog systems. In these tasks, user and item IDs are important identifiers for personalization. Transformer, which is demonstrated with strong language modeling capability, however, is not personalized and fails to make use of the user and item IDs since the ID tokens are not even in the same semantic space as the words. To address this problem, we present a PErsonalized Transformer for Explainable Recommendation (PETER), on which we design a simple and effective learning objective that utilizes the IDs to predict the words in the target explanation, so as to endow the IDs with linguistic meanings and to achieve personalized Transformer. Besides generating explanations, PETER can also make recommendations, which makes it a unified model for the whole recommendation-explanation pipeline. Extensive experiments show that our small unpretrained model outperforms fine-tuned BERT on the generation task, in terms of both effectiveness and efficiency, which highlights the importance and the nice utility of our design.