Predictive Modeling with Temporal Graphical Representation on Electronic Health Records

Deep learning-based predictive models, leveraging Electronic Health Records (EHR), are receiving increasing attention in healthcare. An effective representation of a patient's EHR should hierarchically encompass both the temporal relationships between historical visits and medical events, and the inherent structural information within these elements. Existing patient representation methods can be roughly categorized into sequential representation and graphical representation. The sequential representation methods focus only on the temporal relationships among longitudinal visits. On the other hand, the graphical representation approaches, while adept at extracting the graph-structured relationships between various medical events, fall short in effectively integrate temporal information. To capture both types of information, we model a patient's EHR as a novel temporal heterogeneous graph. This graph includes historical visits nodes and medical events nodes. It propagates structured information from medical event nodes to visit nodes and utilizes time-aware visit nodes to capture changes in the patient's health status. Furthermore, we introduce a novel temporal graph transformer (TRANS) that integrates temporal edge features, global positional encoding, and local structural encoding into heterogeneous graph convolution, capturing both temporal and structural information. We validate the effectiveness of TRANS through extensive experiments on three real-world datasets. The results show that our proposed approach achieves state-of-the-art performance.

Energy-Efficient UAV Swarm Assisted MEC with Dynamic Clustering and Scheduling

In this paper, the energy-efficient unmanned aerial vehicle (UAV) swarm assisted mobile edge computing (MEC) with dynamic clustering and scheduling is studied. In the considered system model, UAVs are divided into multiple swarms, with each swarm consisting of a leader UAV and several follower UAVs to provide computing services to end-users. Unlike existing work, we allow UAVs to dynamically cluster into different swarms, i.e., each follower UAV can change its leader based on the time-varying spatial positions, updated application placement, etc. in a dynamic manner. Meanwhile, UAVs are required to dynamically schedule their energy replenishment, application placement, trajectory planning and task delegation. With the aim of maximizing the long-term energy efficiency of the UAV swarm assisted MEC system, a joint optimization problem of dynamic clustering and scheduling is formulated. Taking into account the underlying cooperation and competition among intelligent UAVs, we further reformulate this optimization problem as a combination of a series of strongly coupled multi-agent stochastic games, and then propose a novel reinforcement learning-based UAV swarm dynamic coordination (RLDC) algorithm for obtaining the equilibrium. Simulations are conducted to evaluate the performance of the RLDC algorithm and demonstrate its superiority over counterparts.

Edge Computing Enabled Real-Time Video Analysis via Adaptive Spatial-Temporal Semantic Filtering

This paper proposes a novel edge computing enabled real-time video analysis system for intelligent visual devices. The proposed system consists of a tracking-assisted object detection module (TAODM) and a region of interesting module (ROIM). TAODM adaptively determines the offloading decision to process each video frame locally with a tracking algorithm or to offload it to the edge server inferred by an object detection model. ROIM determines each offloading frame's resolution and detection model configuration to ensure that the analysis results can return in time. TAODM and ROIM interact jointly to filter the repetitive spatial-temporal semantic information to maximize the processing rate while ensuring high video analysis accuracy. Unlike most existing works, this paper investigates the real-time video analysis systems where the intelligent visual device connects to the edge server through a wireless network with fluctuating network conditions. We decompose the real-time video analysis problem into the offloading decision and configurations selection sub-problems. To solve these two sub-problems, we introduce a double deep Q network (DDQN) based offloading approach and a contextual multi-armed bandit (CMAB) based adaptive configurations selection approach, respectively. A DDQN-CMAB reinforcement learning (DCRL) training framework is further developed to integrate these two approaches to improve the overall video analyzing performance. Extensive simulations are conducted to evaluate the performance of the proposed solution, and demonstrate its superiority over counterparts.

Generative AI-Driven Human Digital Twin in IoT-Healthcare: A Comprehensive Survey

The Internet of things (IoT) can significantly enhance the quality of human life, specifically in healthcare, attracting extensive attentions to IoT-healthcare services. Meanwhile, the human digital twin (HDT) is proposed as an innovative paradigm that can comprehensively characterize the replication of the individual human body in the digital world and reflect its physical status in real time. Naturally, HDT is envisioned to empower IoT-healthcare beyond the application of healthcare monitoring by acting as a versatile and vivid human digital testbed, simulating the outcomes and guiding the practical treatments. However, successfully establishing HDT requires high-fidelity virtual modeling and strong information interactions but possibly with scarce, biased and noisy data. Fortunately, a recent popular technology called generative artificial intelligence (GAI) may be a promising solution because it can leverage advanced AI algorithms to automatically create, manipulate, and modify valuable while diverse data. This survey particularly focuses on the implementation of GAI-driven HDT in IoT-healthcare. We start by introducing the background of IoT-healthcare and the potential of GAI-driven HDT. Then, we delve into the fundamental techniques and present the overall framework of GAI-driven HDT. After that, we explore the realization of GAI-driven HDT in detail, including GAI-enabled data acquisition, communication, data management, digital modeling, and data analysis. Besides, we discuss typical IoT-healthcare applications that can be revolutionized by GAI-driven HDT, namely personalized health monitoring and diagnosis, personalized prescription, and personalized rehabilitation. Finally, we conclude this survey by highlighting some future research directions.

Spatial Pathomics Toolkit for Quantitative Analysis of Podocyte Nuclei with Histology and Spatial Transcriptomics Data in Renal Pathology

Podocytes, specialized epithelial cells that envelop the glomerular capillaries, play a pivotal role in maintaining renal health. The current description and quantification of features on pathology slides are limited, prompting the need for innovative solutions to comprehensively assess diverse phenotypic attributes within Whole Slide Images (WSIs). In particular, understanding the morphological characteristics of podocytes, terminally differentiated glomerular epithelial cells, is crucial for studying glomerular injury. This paper introduces the Spatial Pathomics Toolkit (SPT) and applies it to podocyte pathomics. The SPT consists of three main components: (1) instance object segmentation, enabling precise identification of podocyte nuclei; (2) pathomics feature generation, extracting a comprehensive array of quantitative features from the identified nuclei; and (3) robust statistical analyses, facilitating a comprehensive exploration of spatial relationships between morphological and spatial transcriptomics features.The SPT successfully extracted and analyzed morphological and textural features from podocyte nuclei, revealing a multitude of podocyte morphomic features through statistical analysis. Additionally, we demonstrated the SPT's ability to unravel spatial information inherent to podocyte distribution, shedding light on spatial patterns associated with glomerular injury. By disseminating the SPT, our goal is to provide the research community with a powerful and user-friendly resource that advances cellular spatial pathomics in renal pathology. The implementation and its complete source code of the toolkit are made openly accessible at https://github.com/hrlblab/spatial_pathomics.

A Revolution of Personalized Healthcare: Enabling Human Digital Twin with Mobile AIGC

Mobile Artificial Intelligence-Generated Content (AIGC) technology refers to the adoption of AI algorithms deployed at mobile edge networks to automate the information creation process while fulfilling the requirements of end users. Mobile AIGC has recently attracted phenomenal attentions and can be a key enabling technology for an emerging application, called human digital twin (HDT). HDT empowered by the mobile AIGC is expected to revolutionize the personalized healthcare by generating rare disease data, modeling high-fidelity digital twin, building versatile testbeds, and providing 24/7 customized medical services. To promote the development of this new breed of paradigm, in this article, we propose a system architecture of mobile AIGC-driven HDT and highlight the corresponding design requirements and challenges. Moreover, we illustrate two use cases, i.e., mobile AIGC-driven HDT in customized surgery planning and personalized medication. In addition, we conduct an experimental study to prove the effectiveness of the proposed mobile AIGC-driven HDT solution, which shows a particular application in a virtual physical therapy teaching platform. Finally, we conclude this article by briefly discussing several open issues and future directions.

Understanding and Improving Deep Graph Neural Networks: A Probabilistic Graphical Model Perspective

Recently, graph-based models designed for downstream tasks have significantly advanced research on graph neural networks (GNNs). GNN baselines based on neural message-passing mechanisms such as GCN and GAT perform worse as the network deepens. Therefore, numerous GNN variants have been proposed to tackle this performance degradation problem, including many deep GNNs. However, a unified framework is still lacking to connect these existing models and interpret their effectiveness at a high level. In this work, we focus on deep GNNs and propose a novel view for understanding them. We establish a theoretical framework via inference on a probabilistic graphical model. Given the fixed point equation (FPE) derived from the variational inference on the Markov random fields, the deep GNNs, including JKNet, GCNII, DGCN, and the classical GNNs, such as GCN, GAT, and APPNP, can be regarded as different approximations of the FPE. Moreover, given this framework, more accurate approximations of FPE are brought, guiding us to design a more powerful GNN: coupling graph neural network (CoGNet). Extensive experiments are carried out on citation networks and natural language processing downstream tasks. The results demonstrate that the CoGNet outperforms the SOTA models.

TextRGNN: Residual Graph Neural Networks for Text Classification

Recently, text classification model based on graph neural network (GNN) has attracted more and more attention. Most of these models adopt a similar network paradigm, that is, using pre-training node embedding initialization and two-layer graph convolution. In this work, we propose TextRGNN, an improved GNN structure that introduces residual connection to deepen the convolution network depth. Our structure can obtain a wider node receptive field and effectively suppress the over-smoothing of node features. In addition, we integrate the probabilistic language model into the initialization of graph node embedding, so that the non-graph semantic information of can be better extracted. The experimental results show that our model is general and efficient. It can significantly improve the classification accuracy whether in corpus level or text level, and achieve SOTA performance on a wide range of text classification datasets.

Auto-Encoding Score Distribution Regression for Action Quality Assessment

Action quality assessment (AQA) from videos is a challenging vision task since the relation between videos and action scores is difficult to model. Thus, action quality assessment has been widely studied in the literature. Traditionally, AQA task is treated as a regression problem to learn the underlying mappings between videos and action scores. More recently, the method of uncertainty score distribution learning (USDL) made success due to the introduction of label distribution learning (LDL). But USDL does not apply to dataset with continuous labels and needs a fixed variance in training. In this paper, to address the above problems, we further develop Distribution Auto-Encoder (DAE). DAE takes both advantages of regression algorithms and label distribution learning (LDL).Specifically, it encodes videos into distributions and uses the reparameterization trick in variational auto-encoders (VAE) to sample scores, which establishes a more accurate mapping between videos and scores. Meanwhile, a combined loss is constructed to accelerate the training of DAE. DAE-MT is further proposed to deal with AQA on multi-task datasets. We evaluate our DAE approach on MTL-AQA and JIGSAWS datasets. Experimental results on public datasets demonstrate that our method achieves state-of-the-arts under the Spearman's Rank Correlation: 0.9449 on MTL-AQA and 0.73 on JIGSAWS.

Machine Learning Promoting Extreme Simplification of Spectroscopy Equipment

The spectroscopy measurement is one of main pathways for exploring and understanding the nature. Today, it seems that racing artificial intelligence will remould its styles. The algorithms contained in huge neural networks are capable of substituting many of expensive and complex components of spectrum instruments. In this work, we presented a smart machine learning strategy on the measurement of absorbance curves, and also initially verified that an exceedingly-simplified equipment is sufficient to meet the needs for this strategy. Further, with its simplicity, the setup is expected to infiltrate into many scientific areas in versatile forms.