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Augmented Tensor Decomposition with Stochastic Optimization


Jul 14, 2021
Chaoqi Yang, Cheng Qian, Navjot Singh, Cao Xiao, M Brandon Westover, Edgar Solomonik, Jimeng Sun

* Fixed some typos 

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MTC: Multiresolution Tensor Completion from Partial and Coarse Observations


Jun 18, 2021
Chaoqi Yang, Navjot Singh, Cao Xiao, Cheng Qian, Edgar Solomonik, Jimeng Sun

* Accepted in SIGKDD 2021. Code in https://github.com/ycq091044/MTC 

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Multi-version Tensor Completion for Time-delayed Spatio-temporal Data


May 11, 2021
Cheng Qian, Nikos Kargas, Cao Xiao, Lucas Glass, Nicholas Sidiropoulos, Jimeng Sun


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Change Matters: Medication Change Prediction with Recurrent Residual Networks


May 05, 2021
Chaoqi Yang, Cao Xiao, Lucas Glass, Jimeng Sun

* Accepted in IJCAI'21, this is the long version with appendix 

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SafeDrug: Dual Molecular Graph Encoders for Safe Drug Recommendations


May 05, 2021
Chaoqi Yang, Cao Xiao, Fenglong Ma, Lucas Glass, Jimeng Sun

* Accepted in IJCAI 2021, this is the full version with appendix 

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Machine Learning Applications for Therapeutic Tasks with Genomics Data


May 03, 2021
Kexin Huang, Cao Xiao, Lucas M. Glass, Cathy W. Critchlow, Greg Gibson, Jimeng Sun


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SCRIB: Set-classifier with Class-specific Risk Bounds for Blackbox Models


Mar 05, 2021
Zhen Lin, Cao Xiao, Lucas Glass, M. Brandon Westover, Jimeng Sun


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Therapeutics Data Commons: Machine Learning Datasets and Tasks for Therapeutics


Feb 18, 2021
Kexin Huang, Tianfan Fu, Wenhao Gao, Yue Zhao, Yusuf Roohani, Jure Leskovec, Connor W. Coley, Cao Xiao, Jimeng Sun, Marinka Zitnik


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HINT: Hierarchical Interaction Network for Trial Outcome Prediction Leveraging Web Data


Feb 08, 2021
Tianfan Fu, Kexin Huang, Cao Xiao, Lucas M. Glass, Jimeng Sun


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PyHealth: A Python Library for Health Predictive Models


Jan 11, 2021
Yue Zhao, Zhi Qiao, Cao Xiao, Lucas Glass, Jimeng Sun


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STELAR: Spatio-temporal Tensor Factorization with Latent Epidemiological Regularization


Dec 08, 2020
Nikos Kargas, Cheng Qian, Nicholas D. Sidiropoulos, Cao Xiao, Lucas M. Glass, Jimeng Sun


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A Benchmark Dataset for Understandable Medical Language Translation


Dec 04, 2020
Junyu Luo, Zifei Zheng, Hanzhong Ye, Muchao Ye, Yaqing Wang, Quanzeng You, Cao Xiao, Fenglong Ma


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FLANNEL: Focal Loss Based Neural Network Ensemble for COVID-19 Detection


Oct 30, 2020
Zhi Qiao, Austin Bae, Lucas M. Glass, Cao Xiao, Jimeng Sun


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DeepRite: Deep Recurrent Inverse TreatmEnt Weighting for Adjusting Time-varying Confounding in Modern Longitudinal Observational Data


Oct 28, 2020
Yanbo Xu, Cao Xiao, Jimeng Sun


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UNITE: Uncertainty-based Health Risk Prediction Leveraging Multi-sourced Data


Oct 22, 2020
Chacha Chen, Junjie Liang, Fenglong Ma, Lucas M. Glass, Jimeng Sun, Cao Xiao


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MolDesigner: Interactive Design of Efficacious Drugs with Deep Learning


Oct 05, 2020
Kexin Huang, Tianfan Fu, Dawood Khan, Ali Abid, Ali Abdalla, Abubakar Abid, Lucas M. Glass, Marinka Zitnik, Cao Xiao, Jimeng Sun

* NeurIPS 2020 Demonstration Track 

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MIMOSA: Multi-constraint Molecule Sampling for Molecule Optimization


Oct 05, 2020
Tianfan Fu, Cao Xiao, Xinhao Li, Lucas M. Glass, Jimeng Sun


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SumGNN: Multi-typed Drug Interaction Prediction via Efficient Knowledge Graph Summarization


Oct 04, 2020
Yue Yu, Kexin Huang, Chao Zhang, Lucas M. Glass, Jimeng Sun, Cao Xiao


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Fast Graph Attention Networks Using Effective Resistance Based Graph Sparsification


Jun 17, 2020
Rakshith S Srinivasa, Cao Xiao, Lucas Glass, Justin Romberg, Jimeng Sun

* Submitted to NeurIPS 2020 

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COMPOSE: Cross-Modal Pseudo-Siamese Network for Patient Trial Matching


Jun 15, 2020
Junyi Gao, Cao Xiao, Lucas M. Glass, Jimeng Sun

* Accepted by KDD'20 

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CHEER: Rich Model Helps Poor Model via Knowledge Infusion


May 21, 2020
Cao Xiao, Trong Nghia Hoang, Shenda Hong, Tengfei Ma, Jimeng Sun

* Published in TKDE 

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SkipGNN: Predicting Molecular Interactions with Skip-Graph Networks


Apr 30, 2020
Kexin Huang, Cao Xiao, Lucas Glass, Marinka Zitnik, Jimeng Sun


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MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction


Apr 23, 2020
Kexin Huang, Cao Xiao, Lucas Glass, Jimeng Sun


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DeepPurpose: a Deep Learning Based Drug Repurposing Toolkit


Apr 19, 2020
Kexin Huang, Tianfan Fu, Cao Xiao, Lucas Glass, Jimeng Sun


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SUOD: A Scalable Unsupervised Outlier Detection Framework


Mar 11, 2020
Yue Zhao, Xiyang Hu, Cheng Cheng, Cong Wang, Cao Xiao, Yunlong Wang, Jimeng Sun, Leman Akoglu

* Submitted to KDD '20 Applied Data Science Track. arXiv admin note: substantial text overlap with arXiv:2002.03222 

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CLARA: Clinical Report Auto-completion


Mar 04, 2020
Siddharth Biswal, Cao Xiao, Lucas M. Glass, M. Brandon Westover, Jimeng Sun


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REST: Robust and Efficient Neural Networks for Sleep Monitoring in the Wild


Jan 29, 2020
Rahul Duggal, Scott Freitas, Cao Xiao, Duen Horng Chau, Jimeng Sun

* Accepted to WWW 2020 

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