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Self-supervised EEG Representation Learning for Automatic Sleep Staging


Oct 27, 2021
Chaoqi Yang, Danica Xiao, M. Brandon Westover, Jimeng Sun

* The code is available here: https://github.com/ycq091044/ContraWR 

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PAC-Bayes Information Bottleneck


Oct 04, 2021
Zifeng Wang, Shao-Lun Huang, Ercan E. Kuruoglu, Jimeng Sun, Xi Chen, Yefeng Zheng


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SurvTRACE: Transformers for Survival Analysis with Competing Events


Oct 02, 2021
Zifeng Wang, Jimeng Sun


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Differentiable Scaffolding Tree for Molecular Optimization


Sep 22, 2021
Tianfan Fu, Wenhao Gao, Cao Xiao, Jacob Yasonik, Connor W. Coley, Jimeng Sun


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Augmented Tensor Decomposition with Stochastic Optimization


Jul 14, 2021
Chaoqi Yang, Cheng Qian, Navjot Singh, Cao Xiao, M Brandon Westover, Edgar Solomonik, Jimeng Sun

* Fixed some typos 

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MTC: Multiresolution Tensor Completion from Partial and Coarse Observations


Jun 18, 2021
Chaoqi Yang, Navjot Singh, Cao Xiao, Cheng Qian, Edgar Solomonik, Jimeng Sun

* Accepted in SIGKDD 2021. Code in https://github.com/ycq091044/MTC 

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Locally Valid and Discriminative Confidence Intervals for Deep Learning Models


Jun 01, 2021
Zhen Lin, Shubhendu Trivedi, Jimeng Sun


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Multi-version Tensor Completion for Time-delayed Spatio-temporal Data


May 11, 2021
Cheng Qian, Nikos Kargas, Cao Xiao, Lucas Glass, Nicholas Sidiropoulos, Jimeng Sun


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Change Matters: Medication Change Prediction with Recurrent Residual Networks


May 05, 2021
Chaoqi Yang, Cao Xiao, Lucas Glass, Jimeng Sun

* Accepted in IJCAI'21, this is the long version with appendix 

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SafeDrug: Dual Molecular Graph Encoders for Safe Drug Recommendations


May 05, 2021
Chaoqi Yang, Cao Xiao, Fenglong Ma, Lucas Glass, Jimeng Sun

* Accepted in IJCAI 2021, this is the full version with appendix 

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Machine Learning Applications for Therapeutic Tasks with Genomics Data


May 03, 2021
Kexin Huang, Cao Xiao, Lucas M. Glass, Cathy W. Critchlow, Greg Gibson, Jimeng Sun


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SCRIB: Set-classifier with Class-specific Risk Bounds for Blackbox Models


Mar 05, 2021
Zhen Lin, Cao Xiao, Lucas Glass, M. Brandon Westover, Jimeng Sun


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Therapeutics Data Commons: Machine Learning Datasets and Tasks for Therapeutics


Feb 18, 2021
Kexin Huang, Tianfan Fu, Wenhao Gao, Yue Zhao, Yusuf Roohani, Jure Leskovec, Connor W. Coley, Cao Xiao, Jimeng Sun, Marinka Zitnik


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HINT: Hierarchical Interaction Network for Trial Outcome Prediction Leveraging Web Data


Feb 08, 2021
Tianfan Fu, Kexin Huang, Cao Xiao, Lucas M. Glass, Jimeng Sun


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PyHealth: A Python Library for Health Predictive Models


Jan 11, 2021
Yue Zhao, Zhi Qiao, Cao Xiao, Lucas Glass, Jimeng Sun


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EVA: Generating Longitudinal Electronic Health Records Using Conditional Variational Autoencoders


Dec 18, 2020
Siddharth Biswal, Soumya Ghosh, Jon Duke, Bradley Malin, Walter Stewart, Jimeng Sun


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STELAR: Spatio-temporal Tensor Factorization with Latent Epidemiological Regularization


Dec 08, 2020
Nikos Kargas, Cheng Qian, Nicholas D. Sidiropoulos, Cao Xiao, Lucas M. Glass, Jimeng Sun


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FLANNEL: Focal Loss Based Neural Network Ensemble for COVID-19 Detection


Oct 30, 2020
Zhi Qiao, Austin Bae, Lucas M. Glass, Cao Xiao, Jimeng Sun


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DeepRite: Deep Recurrent Inverse TreatmEnt Weighting for Adjusting Time-varying Confounding in Modern Longitudinal Observational Data


Oct 28, 2020
Yanbo Xu, Cao Xiao, Jimeng Sun


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UNITE: Uncertainty-based Health Risk Prediction Leveraging Multi-sourced Data


Oct 22, 2020
Chacha Chen, Junjie Liang, Fenglong Ma, Lucas M. Glass, Jimeng Sun, Cao Xiao


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SWIFT: Scalable Wasserstein Factorization for Sparse Nonnegative Tensors


Oct 08, 2020
Ardavan Afshar, Kejing Yin, Sherry Yan, Cheng Qian, Joyce C. Ho, Haesun Park, Jimeng Sun


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MolDesigner: Interactive Design of Efficacious Drugs with Deep Learning


Oct 05, 2020
Kexin Huang, Tianfan Fu, Dawood Khan, Ali Abid, Ali Abdalla, Abubakar Abid, Lucas M. Glass, Marinka Zitnik, Cao Xiao, Jimeng Sun

* NeurIPS 2020 Demonstration Track 

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MIMOSA: Multi-constraint Molecule Sampling for Molecule Optimization


Oct 05, 2020
Tianfan Fu, Cao Xiao, Xinhao Li, Lucas M. Glass, Jimeng Sun


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SumGNN: Multi-typed Drug Interaction Prediction via Efficient Knowledge Graph Summarization


Oct 04, 2020
Yue Yu, Kexin Huang, Chao Zhang, Lucas M. Glass, Jimeng Sun, Cao Xiao


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Pay Attention to Evolution: Time Series Forecasting with Deep Graph-Evolution Learning


Aug 28, 2020
Gabriel Spadon, Shenda Hong, Bruno Brandoli, Stan Matwin, Jose F. Rodrigues-Jr, Jimeng Sun

* Submitted to IEEE Transactions on Pattern Analysis and Machine Intelligence 

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SDE-Net: Equipping Deep Neural Networks with Uncertainty Estimates


Aug 24, 2020
Lingkai Kong, Jimeng Sun, Chao Zhang

* ICML2020. Code is available through https://github.com/Lingkai-Kong/SDE-Net 

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HOLMES: Health OnLine Model Ensemble Serving for Deep Learning Models in Intensive Care Units


Aug 10, 2020
Shenda Hong, Yanbo Xu, Alind Khare, Satria Priambada, Kevin Maher, Alaa Aljiffry, Jimeng Sun, Alexey Tumanov


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