Get our free extension to see links to code for papers anywhere online!

Chrome logo Add to Chrome

Firefox logo Add to Firefox

Picture for Jimeng Sun

Change Matters: Medication Change Prediction with Recurrent Residual Networks


May 05, 2021
Chaoqi Yang, Cao Xiao, Lucas Glass, Jimeng Sun

* Accepted in IJCAI'21, this is the long version with appendix 

  Access Paper or Ask Questions

SafeDrug: Dual Molecular Graph Encoders for Safe Drug Recommendations


May 05, 2021
Chaoqi Yang, Cao Xiao, Fenglong Ma, Lucas Glass, Jimeng Sun

* Accepted in IJCAI 2021, this is the full version with appendix 

  Access Paper or Ask Questions

Machine Learning Applications for Therapeutic Tasks with Genomics Data


May 03, 2021
Kexin Huang, Cao Xiao, Lucas M. Glass, Cathy W. Critchlow, Greg Gibson, Jimeng Sun


  Access Paper or Ask Questions

SCRIB: Set-classifier with Class-specific Risk Bounds for Blackbox Models


Mar 05, 2021
Zhen Lin, Cao Xiao, Lucas Glass, M. Brandon Westover, Jimeng Sun


  Access Paper or Ask Questions

Therapeutics Data Commons: Machine Learning Datasets and Tasks for Therapeutics


Feb 18, 2021
Kexin Huang, Tianfan Fu, Wenhao Gao, Yue Zhao, Yusuf Roohani, Jure Leskovec, Connor W. Coley, Cao Xiao, Jimeng Sun, Marinka Zitnik


  Access Paper or Ask Questions

HINT: Hierarchical Interaction Network for Trial Outcome Prediction Leveraging Web Data


Feb 08, 2021
Tianfan Fu, Kexin Huang, Cao Xiao, Lucas M. Glass, Jimeng Sun


  Access Paper or Ask Questions

PyHealth: A Python Library for Health Predictive Models


Jan 11, 2021
Yue Zhao, Zhi Qiao, Cao Xiao, Lucas Glass, Jimeng Sun


  Access Paper or Ask Questions

EVA: Generating Longitudinal Electronic Health Records Using Conditional Variational Autoencoders


Dec 18, 2020
Siddharth Biswal, Soumya Ghosh, Jon Duke, Bradley Malin, Walter Stewart, Jimeng Sun


  Access Paper or Ask Questions

STELAR: Spatio-temporal Tensor Factorization with Latent Epidemiological Regularization


Dec 08, 2020
Nikos Kargas, Cheng Qian, Nicholas D. Sidiropoulos, Cao Xiao, Lucas M. Glass, Jimeng Sun


  Access Paper or Ask Questions

FLANNEL: Focal Loss Based Neural Network Ensemble for COVID-19 Detection


Oct 30, 2020
Zhi Qiao, Austin Bae, Lucas M. Glass, Cao Xiao, Jimeng Sun


  Access Paper or Ask Questions

DeepRite: Deep Recurrent Inverse TreatmEnt Weighting for Adjusting Time-varying Confounding in Modern Longitudinal Observational Data


Oct 28, 2020
Yanbo Xu, Cao Xiao, Jimeng Sun


  Access Paper or Ask Questions

UNITE: Uncertainty-based Health Risk Prediction Leveraging Multi-sourced Data


Oct 22, 2020
Chacha Chen, Junjie Liang, Fenglong Ma, Lucas M. Glass, Jimeng Sun, Cao Xiao


  Access Paper or Ask Questions

SWIFT: Scalable Wasserstein Factorization for Sparse Nonnegative Tensors


Oct 08, 2020
Ardavan Afshar, Kejing Yin, Sherry Yan, Cheng Qian, Joyce C. Ho, Haesun Park, Jimeng Sun


  Access Paper or Ask Questions

MolDesigner: Interactive Design of Efficacious Drugs with Deep Learning


Oct 05, 2020
Kexin Huang, Tianfan Fu, Dawood Khan, Ali Abid, Ali Abdalla, Abubakar Abid, Lucas M. Glass, Marinka Zitnik, Cao Xiao, Jimeng Sun

* NeurIPS 2020 Demonstration Track 

  Access Paper or Ask Questions

MIMOSA: Multi-constraint Molecule Sampling for Molecule Optimization


Oct 05, 2020
Tianfan Fu, Cao Xiao, Xinhao Li, Lucas M. Glass, Jimeng Sun


  Access Paper or Ask Questions

SumGNN: Multi-typed Drug Interaction Prediction via Efficient Knowledge Graph Summarization


Oct 04, 2020
Yue Yu, Kexin Huang, Chao Zhang, Lucas M. Glass, Jimeng Sun, Cao Xiao


  Access Paper or Ask Questions

Pay Attention to Evolution: Time Series Forecasting with Deep Graph-Evolution Learning


Aug 28, 2020
Gabriel Spadon, Shenda Hong, Bruno Brandoli, Stan Matwin, Jose F. Rodrigues-Jr, Jimeng Sun

* Submitted to IEEE Transactions on Pattern Analysis and Machine Intelligence 

  Access Paper or Ask Questions

SDE-Net: Equipping Deep Neural Networks with Uncertainty Estimates


Aug 24, 2020
Lingkai Kong, Jimeng Sun, Chao Zhang

* ICML2020. Code is available through https://github.com/Lingkai-Kong/SDE-Net 

  Access Paper or Ask Questions

HOLMES: Health OnLine Model Ensemble Serving for Deep Learning Models in Intensive Care Units


Aug 10, 2020
Shenda Hong, Yanbo Xu, Alind Khare, Satria Priambada, Kevin Maher, Alaa Aljiffry, Jimeng Sun, Alexey Tumanov


  Access Paper or Ask Questions

EMIXER: End-to-end Multimodal X-ray Generation via Self-supervision


Jul 10, 2020
Siddharth Biswal, Peiye Zhuang, Ayis Pyrros, Nasir Siddiqui, Sanmi Koyejo, Jimeng Sun


  Access Paper or Ask Questions

ELF: An Early-Exiting Framework for Long-Tailed Classification


Jun 22, 2020
Rahul Duggal, Scott Freitas, Sunny Dhamnani, Duen Horng, Chau, Jimeng Sun


  Access Paper or Ask Questions

STEAM: Self-Supervised Taxonomy Expansion with Mini-Paths


Jun 18, 2020
Yue Yu, Yinghao Li, Jiaming Shen, Hao Feng, Jimeng Sun, Chao Zhang

* KDD 2020 Research Track Full Paper 

  Access Paper or Ask Questions

Fast Graph Attention Networks Using Effective Resistance Based Graph Sparsification


Jun 17, 2020
Rakshith S Srinivasa, Cao Xiao, Lucas Glass, Justin Romberg, Jimeng Sun

* Submitted to NeurIPS 2020 

  Access Paper or Ask Questions

COMPOSE: Cross-Modal Pseudo-Siamese Network for Patient Trial Matching


Jun 15, 2020
Junyi Gao, Cao Xiao, Lucas M. Glass, Jimeng Sun

* Accepted by KDD'20 

  Access Paper or Ask Questions

CHEER: Rich Model Helps Poor Model via Knowledge Infusion


May 21, 2020
Cao Xiao, Trong Nghia Hoang, Shenda Hong, Tengfei Ma, Jimeng Sun

* Published in TKDE 

  Access Paper or Ask Questions

SkipGNN: Predicting Molecular Interactions with Skip-Graph Networks


Apr 30, 2020
Kexin Huang, Cao Xiao, Lucas Glass, Marinka Zitnik, Jimeng Sun


  Access Paper or Ask Questions

MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction


Apr 23, 2020
Kexin Huang, Cao Xiao, Lucas Glass, Jimeng Sun


  Access Paper or Ask Questions

DeepPurpose: a Deep Learning Based Drug Repurposing Toolkit


Apr 19, 2020
Kexin Huang, Tianfan Fu, Cao Xiao, Lucas Glass, Jimeng Sun


  Access Paper or Ask Questions

SUOD: A Scalable Unsupervised Outlier Detection Framework


Mar 11, 2020
Yue Zhao, Xiyang Hu, Cheng Cheng, Cong Wang, Cao Xiao, Yunlong Wang, Jimeng Sun, Leman Akoglu

* Submitted to KDD '20 Applied Data Science Track. arXiv admin note: substantial text overlap with arXiv:2002.03222 

  Access Paper or Ask Questions

CLARA: Clinical Report Auto-completion


Mar 04, 2020
Siddharth Biswal, Cao Xiao, Lucas M. Glass, M. Brandon Westover, Jimeng Sun


  Access Paper or Ask Questions