Does Reasoning Preserve Alignment? On the Trustworthiness of Large Reasoning Models

Instruction-tuned LLMs are increasingly converted into reasoning models through post-training to improve multi-step task performance. This conversion is usually optimized for reasoning accuracy, without explicitly preserving the alignment behavior of the instruction-tuned model, such as safe refusal, bias avoidance, and privacy protection. We ask: does this conversion preserve alignment? We study this question through a trustworthiness audit and find that it is not behavior-preserving by default. For a systematic analysis, we compare reasoning models produced via supervised fine-tuning, RL-based post-training, and distillation against matched instruction-tuned baselines across six trustworthiness dimensions: safety, toxicity, stereotyping and bias, machine ethics, privacy, and out-of-distribution robustness. We observe that reasoning models often improve on reasoning benchmarks but exhibit alignment regressions, including increased toxicity, amplified stereotyping, miscalibrated refusal, and contextual privacy leakage. These regressions are consistent with behavioral drift from the instruction-tuned baseline, measured by KL divergence. Overall, our results point to the broader conclusion that trustworthiness metrics are essential for evaluating reasoning models and should be reported alongside gains in reasoning capability.

What Objects Enable, Not What They Are: Functional Latent Spaces for Affordance Reasoning

Existing robot planning systems rely on appearance-based reasoning, where visual observations are encoded into latent spaces organized around object appearances (e.g., recognizing a "cart" based on how it looks). However, planning requires reasoning about task-relevant functionalities of objects (e.g., whether an object is "movable"), which appearance-based latent spaces do not capture. As a result, existing approaches struggle to generalize to novel robot-object interactions. We address this limited generalizability through affordance reasoning, enabling planning based on task-relevant object functionalities instead of appearance alone. We introduce A4D, which maps visual observations into a shared latent space structured around affordances (e.g., "movable"). By projecting visual observations into this functional latent space and measuring their proximity to affordances, A4D infers functionalities relevant to the observed object. Furthermore, we introduce an affordance discovery mechanism that expands the latent space to handle unseen scenarios where existing affordances are insufficient. A4D uses proximity in the functional latent space to quantify uncertainty in affordance inference and selectively triggers affordance discovery. We evaluate A4D across several planning tasks involving diverse and unseen affordances. A4D achieves 94% inference accuracy on existing affordances outperforming state-of-the-art approaches by over 15% points, improves new-affordance inference accuracy from 70% to over 90% with fewer than 10% of the original training data, and enables 100x faster inference. Code, videos, and data available at: https://A4Dance-reasoning.github.io.

KV-Fold: One-Step KV-Cache Recurrence for Long-Context Inference

We introduce KV-Fold, a simple, training-free long-context inference protocol that treats the key-value (KV) cache as the accumulator in a left fold over sequence chunks. At each step, the model processes the next chunk conditioned on the accumulated cache, appends the newly produced keys and values, and passes the enlarged cache forward; the same one-step update is applied repeatedly, analogous to foldl in functional programming. Building on the KV cache concatenation primitive introduced for latent multi-agent communication, we repurpose it as a chunk-to-chunk recurrence for long-context inference. When processing chunk t, the model attends to the KV cache carried from earlier chunks as a prefix, reusing its internal state across segments without modifying or retraining the model. Despite its simplicity, the induced recurrence is stable: per-step drift rises briefly and then saturates into a flat plateau that persists across deep chains. This plateau is insensitive to a 10,000x change in numerical precision, robust across chunk sizes, and consistent across model families. At the task level, KV-Fold preserves exact information over long distances. On a needle-in-a-haystack benchmark, it achieves 100% exact-match retrieval across 152 trials spanning contexts from 16K to 128K tokens and chain depths up to 511 on Llama-3.1-8B, while remaining within the memory limits of a single 40GB GPU. Compared to streaming methods, which trade fidelity for bounded memory, KV-Fold maintains long-range retrieval while operating as a sequence of tractable forward passes. Overall, our results show that frozen pretrained transformers already support a stable form of KV-cache recurrence, providing a practical route to long-context inference without architectural changes or training.

Subspace Control: Turning Constrained Model Steering into Controllable Spectral Optimization

Foundation models, such as large language models (LLMs), are powerful but often require customization before deployment to satisfy practical constraints such as safety, privacy, and task-specific requirements, leading to "constrained" optimization problems for model steering and adaptation. However, solving such problems remains largely underexplored and is particularly challenging due to interference between the primary objective and constraint objectives during optimization. In this paper, we propose a subspace control framework for constrained model training. Specifically, (i) we first analyze, from a model merging perspective, how spectral cross-task interference arises and show that it can be resolved via a one-shot solution that orthogonalizes the merged subspace; (ii) we establish a connection between this solution and gradient orthogonalization in the spectral optimizer Muon; and (iii) building on these insights, we introduce SIFT (spectral interference-free training), which leverages a localization scheme to selectively intervene during optimization, enabling controllable updates that mitigate objective-constraint conflicts. We evaluate SIFT across four representative applications: (a) machine unlearning, (b) safety alignment, (c) text-to-speech adaptation, and (d) hallucination mitigation. Compared to both control-based and control-free baselines, SIFT consistently achieves substantial and robust performance improvements across all tasks. Code is available at https://github.com/OPTML-Group/SIFT.

Differentiable Initialization-Accelerated CPU-GPU Hybrid Combinatorial Scheduling

This paper presents a hybrid CPU-GPU framework for solving combinatorial scheduling problems formulated as Integer Linear Programming (ILP). While scheduling underpins many optimization tasks in computing systems, solving these problems optimally at scale remains a long-standing challenge due to their NP-hard nature. We introduce a novel approach that combines differentiable optimization with classical ILP solving. Specifically, we utilize differentiable presolving to rapidly generate high-quality partial solutions, which serve as warm-starts for commercial ILP solvers (CPLEX, Gurobi) and rising open-source solver HiGHS. This method enables significantly improved early pruning compared to state-of-the-art standalone solvers. Empirical results across industry-scale benchmarks demonstrate up to a $10\times$ performance gain over baselines, narrowing the optimality gap to $<0.1\%$. This work represents the first demonstration of utilizing differentiable optimization to initialize exact ILP solvers for combinatorial scheduling, opening new opportunities to integrate machine learning infrastructure with classical exact optimization methods across broader domains.

GaloisSAT: Differentiable Boolean Satisfiability Solving via Finite Field Algebra

Boolean satisfiability (SAT) problem, the first problem proven to be NP-complete, has become a fundamental challenge in computational complexity, with widespread applications in optimization and verification across many domains. Despite significant algorithmic advances over the past two decades, the performance of SAT solvers has improved at a limited pace. Notably, the 2025 competition winner shows only about a 2X improvement over the 2006 winner in SAT Competition performance after nearly 20 years of effort. This paper introduces GaloisSAT, a novel hybrid GPU-CPU SAT solver that integrates a differentiable SAT solving engine powered by modern machine learning infrastructure on GPUs, followed by a traditional CDCL-based SAT solving stage on CPUs. GaloisSAT is benchmarked against the latest versions of state-of-the-art solvers, Kissat and CaDiCaL, using the SAT Competition 2024 benchmark suite. Results demonstrate substantial improvements in the official SAT Competition metric PAR-2 (penalized average runtime with a timeout of 5,000 seconds and a penalty factor of 2). Specifically, GaloisSAT achieves an 8.41X speedup in the satisfiable category and a 1.29X speedup in the unsatisfiable category compared to the strongest baselines.

HIPO: Instruction Hierarchy via Constrained Reinforcement Learning

Hierarchical Instruction Following (HIF) refers to the problem of prompting large language models with a priority-ordered stack of instructions. Standard methods like RLHF and DPO typically fail in this problem since they mainly optimize for a single objective, failing to explicitly enforce system prompt compliance. Meanwhile, supervised fine-tuning relies on mimicking filtered, compliant data, which fails to establish the priority asymmetry at the algorithmic level. In this paper, we introduce \textsc{HIPO}, a novel alignment framework that formulates HIF as a Constrained Markov Decision Process. \textsc{HIPO} elevates system prompts from mere input context to strict algorithmic boundaries. Using a primal-dual safe reinforcement learning approach, the algorithm dynamically enforces system prompt compliance as an explicit constraint, maximizing user utility strictly within this feasible region. Extensive evaluations across diverse model architectures (e.g., Qwen, Phi, Llama) demonstrate that \textsc{HIPO} significantly improves both system compliance and user utility. Furthermore, mechanistic analysis reveals that this constrained optimization autonomously drives the model to shift its attention toward long-range system tokens, providing a principled foundation for reliable LLM deployment in complex workflows.

Search-Augmented Masked Diffusion Models for Constrained Generation

Discrete diffusion models generate sequences by iteratively denoising samples corrupted by categorical noise, offering an appealing alternative to autoregressive decoding for structured and symbolic generation. However, standard training targets a likelihood-based objective that primarily matches the data distribution and provides no native mechanism for enforcing hard constraints or optimizing non-differentiable properties at inference time. This work addresses this limitation and introduces Search-Augmented Masked Diffusion (SearchDiff), a training-free neurosymbolic inference framework that integrates informed search directly into the reverse denoising process. At each denoising step, the model predictions define a proposal set that is optimized under a user-specified property satisfaction, yielding a modified reverse transition that steers sampling toward probable and feasible solutions. Experiments in biological design and symbolic reasoning illustrate that SearchDiff substantially improves constraint satisfaction and property adherence, while consistently outperforming discrete diffusion and autoregressive baselines.

Monotonicity as an Architectural Bias for Robust Language Models

Large language models (LLMs) are known to exhibit brittle behavior under adversarial prompts and jailbreak attacks, even after extensive alignment and fine-tuning. This fragility reflects a broader challenge of modern neural language models: small, carefully structured perturbations in high-dimensional input spaces can induce large and unpredictable changes in internal semantic representations and output. We investigate monotonicity as an architectural inductive bias for improving the robustness of Transformer-based language models. Monotonicity constrains semantic transformations so that strengthening information, evidence, or constraints cannot lead to regressions in the corresponding internal representations. Such order-preserving behavior has long been exploited in control and safety-critical systems to simplify reasoning and improve robustness, but has traditionally been viewed as incompatible with the expressivity required by neural language models. We show that this trade-off is not inherent. By enforcing monotonicity selectively in the feed-forward sublayers of sequence-to-sequence Transformers -- while leaving attention mechanisms unconstrained -- we obtain monotone language models that preserve the performance of their pretrained counterparts. This architectural separation allows negation, contradiction, and contextual interactions to be introduced explicitly through attention, while ensuring that subsequent semantic refinement is order-preserving. Empirically, monotonicity substantially improves robustness: adversarial attack success rates drop from approximately 69% to 19%, while standard summarization performance degrades only marginally.

Active Causal Experimentalist (ACE): Learning Intervention Strategies via Direct Preference Optimization

Discovering causal relationships requires controlled experiments, but experimentalists face a sequential decision problem: each intervention reveals information that should inform what to try next. Traditional approaches such as random sampling, greedy information maximization, and round-robin coverage treat each decision in isolation, unable to learn adaptive strategies from experience. We propose Active Causal Experimentalist (ACE), which learns experimental design as a sequential policy. Our key insight is that while absolute information gains diminish as knowledge accumulates (making value-based RL unstable), relative comparisons between candidate interventions remain meaningful throughout. ACE exploits this via Direct Preference Optimization, learning from pairwise intervention comparisons rather than non-stationary reward magnitudes. Across synthetic benchmarks, physics simulations, and economic data, ACE achieves 70-71% improvement over baselines at equal intervention budgets (p < 0.001, Cohen's d ~ 2). Notably, the learned policy autonomously discovers that collider mechanisms require concentrated interventions on parent variables, a theoretically-grounded strategy that emerges purely from experience. This suggests preference-based learning can recover principled experimental strategies, complementing theory with learned domain adaptation.