Towards DS-NER: Unveiling and Addressing Latent Noise in Distant Annotations

Distantly supervised named entity recognition (DS-NER) has emerged as a cheap and convenient alternative to traditional human annotation methods, enabling the automatic generation of training data by aligning text with external resources. Despite the many efforts in noise measurement methods, few works focus on the latent noise distribution between different distant annotation methods. In this work, we explore the effectiveness and robustness of DS-NER by two aspects: (1) distant annotation techniques, which encompasses both traditional rule-based methods and the innovative large language model supervision approach, and (2) noise assessment, for which we introduce a novel framework. This framework addresses the challenges by distinctly categorizing them into the unlabeled-entity problem (UEP) and the noisy-entity problem (NEP), subsequently providing specialized solutions for each. Our proposed method achieves significant improvements on eight real-world distant supervision datasets originating from three different data sources and involving four distinct annotation techniques, confirming its superiority over current state-of-the-art methods.

Automated Detection of Clinical Entities in Lung and Breast Cancer Reports Using NLP Techniques

Research projects, including those focused on cancer, rely on the manual extraction of information from clinical reports. This process is time-consuming and prone to errors, limiting the efficiency of data-driven approaches in healthcare. To address these challenges, Natural Language Processing (NLP) offers an alternative for automating the extraction of relevant data from electronic health records (EHRs). In this study, we focus on lung and breast cancer due to their high incidence and the significant impact they have on public health. Early detection and effective data management in both types of cancer are crucial for improving patient outcomes. To enhance the accuracy and efficiency of data extraction, we utilized GMV's NLP tool uQuery, which excels at identifying relevant entities in clinical texts and converting them into standardized formats such as SNOMED and OMOP. uQuery not only detects and classifies entities but also associates them with contextual information, including negated entities, temporal aspects, and patient-related details. In this work, we explore the use of NLP techniques, specifically Named Entity Recognition (NER), to automatically identify and extract key clinical information from EHRs related to these two cancers. A dataset from Health Research Institute Hospital La Fe (IIS La Fe), comprising 200 annotated breast cancer and 400 lung cancer reports, was used, with eight clinical entities manually labeled using the Doccano platform. To perform NER, we fine-tuned the bsc-bio-ehr-en3 model, a RoBERTa-based biomedical linguistic model pre-trained in Spanish. Fine-tuning was performed using the Transformers architecture, enabling accurate recognition of clinical entities in these cancer types. Our results demonstrate strong overall performance, particularly in identifying entities like MET and PAT, although challenges remain with less frequent entities like EVOL.

LLM-based Prompt Ensemble for Reliable Medical Entity Recognition from EHRs

Electronic Health Records (EHRs) are digital records of patient information, often containing unstructured clinical text. Named Entity Recognition (NER) is essential in EHRs for extracting key medical entities like problems, tests, and treatments to support downstream clinical applications. This paper explores prompt-based medical entity recognition using large language models (LLMs), specifically GPT-4o and DeepSeek-R1, guided by various prompt engineering techniques, including zero-shot, few-shot, and an ensemble approach. Among all strategies, GPT-4o with prompt ensemble achieved the highest classification performance with an F1-score of 0.95 and recall of 0.98, outperforming DeepSeek-R1 on the task. The ensemble method improved reliability by aggregating outputs through embedding-based similarity and majority voting.

A Comparative Analysis of Static Word Embeddings for Hungarian

This paper presents a comprehensive analysis of various static word embeddings for Hungarian, including traditional models such as Word2Vec, FastText, as well as static embeddings derived from BERT-based models using different extraction methods. We evaluate these embeddings on both intrinsic and extrinsic tasks to provide a holistic view of their performance. For intrinsic evaluation, we employ a word analogy task, which assesses the embeddings ability to capture semantic and syntactic relationships. Our results indicate that traditional static embeddings, particularly FastText, excel in this task, achieving high accuracy and mean reciprocal rank (MRR) scores. Among the BERT-based models, the X2Static method for extracting static embeddings demonstrates superior performance compared to decontextualized and aggregate methods, approaching the effectiveness of traditional static embeddings. For extrinsic evaluation, we utilize a bidirectional LSTM model to perform Named Entity Recognition (NER) and Part-of-Speech (POS) tagging tasks. The results reveal that embeddings derived from dynamic models, especially those extracted using the X2Static method, outperform purely static embeddings. Notably, ELMo embeddings achieve the highest accuracy in both NER and POS tagging tasks, underscoring the benefits of contextualized representations even when used in a static form. Our findings highlight the continued relevance of static word embeddings in NLP applications and the potential of advanced extraction methods to enhance the utility of BERT-based models. This piece of research contributes to the understanding of embedding performance in the Hungarian language and provides valuable insights for future developments in the field. The training scripts, evaluation codes, restricted vocabulary, and extracted embeddings will be made publicly available to support further research and reproducibility.

Development of a WAZOBIA-Named Entity Recognition System

Named Entity Recognition NER is very crucial for various natural language processing applications, including information extraction, machine translation, and sentiment analysis. Despite the ever-increasing interest in African languages within computational linguistics, existing NER systems focus mainly on English, European, and a few other global languages, leaving a significant gap for under-resourced languages. This research presents the development of a WAZOBIA-NER system tailored for the three most prominent Nigerian languages: Hausa, Yoruba, and Igbo. This research begins with a comprehensive compilation of annotated datasets for each language, addressing data scarcity and linguistic diversity challenges. Exploring the state-of-the-art machine learning technique, Conditional Random Fields (CRF) and deep learning models such as Bidirectional Long Short-Term Memory (BiLSTM), Bidirectional Encoder Representation from Transformers (Bert) and fine-tune with a Recurrent Neural Network (RNN), the study evaluates the effectiveness of these approaches in recognizing three entities: persons, organizations, and locations. The system utilizes optical character recognition (OCR) technology to convert textual images into machine-readable text, thereby enabling the Wazobia system to accept both input text and textual images for extraction purposes. The system achieved a performance of 0.9511 in precision, 0.9400 in recall, 0.9564 in F1-score, and 0.9301 in accuracy. The model's evaluation was conducted across three languages, with precision, recall, F1-score, and accuracy as key assessment metrics. The Wazobia-NER system demonstrates that it is feasible to build robust NER tools for under-resourced African languages using current NLP frameworks and transfer learning.

Logits-Constrained Framework with RoBERTa for Ancient Chinese NER

This paper presents a Logits-Constrained (LC) framework for Ancient Chinese Named Entity Recognition (NER), evaluated on the EvaHan 2025 benchmark. Our two-stage model integrates GujiRoBERTa for contextual encoding and a differentiable decoding mechanism to enforce valid BMES label transitions. Experiments demonstrate that LC improves performance over traditional CRF and BiLSTM-based approaches, especially in high-label or large-data settings. We also propose a model selection criterion balancing label complexity and dataset size, providing practical guidance for real-world Ancient Chinese NLP tasks.

Positional Attention for Efficient BERT-Based Named Entity Recognition

This paper presents a framework for Named Entity Recognition (NER) leveraging the Bidirectional Encoder Representations from Transformers (BERT) model in natural language processing (NLP). NER is a fundamental task in NLP with broad applicability across downstream applications. While BERT has established itself as a state-of-the-art model for entity recognition, fine-tuning it from scratch for each new application is computationally expensive and time-consuming. To address this, we propose a cost-efficient approach that integrates positional attention mechanisms into the entity recognition process and enables effective customization using pre-trained parameters. The framework is evaluated on a Kaggle dataset derived from the Groningen Meaning Bank corpus and achieves strong performance with fewer training epochs. This work contributes to the field by offering a practical solution for reducing the training cost of BERT-based NER systems while maintaining high accuracy.

Zero-Shot Document-Level Biomedical Relation Extraction via Scenario-based Prompt Design in Two-Stage with LLM

With the advent of artificial intelligence (AI), many researchers are attempting to extract structured information from document-level biomedical literature by fine-tuning large language models (LLMs). However, they face significant challenges such as the need for expensive hardware, like high-performance GPUs and the high labor costs associated with annotating training datasets, especially in biomedical realm. Recent research on LLMs, such as GPT-4 and Llama3, has shown promising performance in zero-shot settings, inspiring us to explore a novel approach to achieve the same results from unannotated full documents using general LLMs with lower hardware and labor costs. Our approach combines two major stages: named entity recognition (NER) and relation extraction (RE). NER identifies chemical, disease and gene entities from the document with synonym and hypernym extraction using an LLM with a crafted prompt. RE extracts relations between entities based on predefined relation schemas and prompts. To enhance the effectiveness of prompt, we propose a five-part template structure and a scenario-based prompt design principles, along with evaluation method to systematically assess the prompts. Finally, we evaluated our approach against fine-tuning and pre-trained models on two biomedical datasets: ChemDisGene and CDR. The experimental results indicate that our proposed method can achieve comparable accuracy levels to fine-tuning and pre-trained models but with reduced human and hardware expenses.

A Comprehensive Part-of-Speech Tagging to Standardize Central-Kurdish Language: A Research Guide for Kurdish Natural Language Processing Tasks

- The field of natural language processing (NLP) has dramatically expanded within the last decade. Many human-being applications are conducted daily via NLP tasks, starting from machine translation, speech recognition, text generation and recommendations, Part-of-Speech tagging (POS), and Named-Entity Recognition (NER). However, low-resourced languages, such as the Central-Kurdish language (CKL), mainly remain unexamined due to shortage of necessary resources to support their development. The POS tagging task is the base of other NLP tasks; for example, the POS tag set has been used to standardized languages to provide the relationship between words among the sentences, followed by machine translation and text recommendation. Specifically, for the CKL, most of the utilized or provided POS tagsets are neither standardized nor comprehensive. To this end, this study presented an accurate and comprehensive POS tagset for the CKL to provide better performance of the Kurdish NLP tasks. The article also collected most of the POS tags from different studies as well as from Kurdish linguistic experts to standardized part-of-speech tags. The proposed POS tagset is designed to annotate a large CKL corpus and support Kurdish NLP tasks. The initial investigations of this study via comparison with the Universal Dependencies framework for standard languages, show that the proposed POS tagset can streamline or correct sentences more accurately for Kurdish NLP tasks.

EDU-NER-2025: Named Entity Recognition in Urdu Educational Texts using XLM-RoBERTa with X (formerly Twitter)

Named Entity Recognition (NER) plays a pivotal role in various Natural Language Processing (NLP) tasks by identifying and classifying named entities (NEs) from unstructured data into predefined categories such as person, organization, location, date, and time. While extensive research exists for high-resource languages and general domains, NER in Urdu particularly within domain-specific contexts like education remains significantly underexplored. This is Due to lack of annotated datasets for educational content which limits the ability of existing models to accurately identify entities such as academic roles, course names, and institutional terms, underscoring the urgent need for targeted resources in this domain. To the best of our knowledge, no dataset exists in the domain of the Urdu language for this purpose. To achieve this objective this study makes three key contributions. Firstly, we created a manually annotated dataset in the education domain, named EDU-NER-2025, which contains 13 unique most important entities related to education domain. Second, we describe our annotation process and guidelines in detail and discuss the challenges of labelling EDU-NER-2025 dataset. Third, we addressed and analyzed key linguistic challenges, such as morphological complexity and ambiguity, which are prevalent in formal Urdu texts.