Extracting Information from Scientific Literature via Visual Table Question Answering Models

This study explores three approaches to processing table data in scientific papers to enhance extractive question answering and develop a software tool for the systematic review process. The methods evaluated include: (1) Optical Character Recognition (OCR) for extracting information from documents, (2) Pre-trained models for document visual question answering, and (3) Table detection and structure recognition to extract and merge key information from tables with textual content to answer extractive questions. In exploratory experiments, we augmented ten sample test documents containing tables and relevant content against RF- EMF-related scientific papers with seven predefined extractive question-answer pairs. The results indicate that approaches preserving table structure outperform the others, particularly in representing and organizing table content. Accurately recognizing specific notations and symbols within the documents emerged as a critical factor for improved results. Our study concludes that preserving the structural integrity of tables is essential for enhancing the accuracy and reliability of extractive question answering in scientific documents.

Enhancing Document VQA Models via Retrieval-Augmented Generation

Document Visual Question Answering (Document VQA) must cope with documents that span dozens of pages, yet leading systems still concatenate every page or rely on very large vision-language models, both of which are memory-hungry. Retrieval-Augmented Generation (RAG) offers an attractive alternative, first retrieving a concise set of relevant segments before generating answers from this selected evidence. In this paper, we systematically evaluate the impact of incorporating RAG into Document VQA through different retrieval variants - text-based retrieval using OCR tokens and purely visual retrieval without OCR - across multiple models and benchmarks. Evaluated on the multi-page datasets MP-DocVQA, DUDE, and InfographicVQA, the text-centric variant improves the "concatenate-all-pages" baseline by up to +22.5 ANLS, while the visual variant achieves +5.0 ANLS improvement without requiring any text extraction. An ablation confirms that retrieval and reranking components drive most of the gain, whereas the layout-guided chunking strategy - proposed in several recent works to leverage page structure - fails to help on these datasets. Our experiments demonstrate that careful evidence selection consistently boosts accuracy across multiple model sizes and multi-page benchmarks, underscoring its practical value for real-world Document VQA.

Context-Adaptive Synthesis and Compression for Enhanced Retrieval-Augmented Generation in Complex Domains

Large Language Models (LLMs) excel in language tasks but are prone to hallucinations and outdated knowledge. Retrieval-Augmented Generation (RAG) mitigates these by grounding LLMs in external knowledge. However, in complex domains involving multiple, lengthy, or conflicting documents, traditional RAG suffers from information overload and inefficient synthesis, leading to inaccurate and untrustworthy answers. To address this, we propose CASC (Context-Adaptive Synthesis and Compression), a novel framework that intelligently processes retrieved contexts. CASC introduces a Context Analyzer & Synthesizer (CAS) module, powered by a fine-tuned smaller LLM, which performs key information extraction, cross-document consistency checking and conflict resolution, and question-oriented structured synthesis. This process transforms raw, scattered information into a highly condensed, structured, and semantically rich context, significantly reducing the token count and cognitive load for the final Reader LLM. We evaluate CASC on SciDocs-QA, a new challenging multi-document question answering dataset designed for complex scientific domains with inherent redundancies and conflicts. Our extensive experiments demonstrate that CASC consistently outperforms strong baselines.

Trustworthy Agents for Electronic Health Records through Confidence Estimation

Large language models (LLMs) show promise for extracting information from Electronic Health Records (EHR) and supporting clinical decisions. However, deployment in clinical settings faces challenges due to hallucination risks. We propose Hallucination Controlled Accuracy at k% (HCAcc@k%), a novel metric quantifying the accuracy-reliability trade-off at varying confidence thresholds. We introduce TrustEHRAgent, a confidence-aware agent incorporating stepwise confidence estimation for clinical question answering. Experiments on MIMIC-III and eICU datasets show TrustEHRAgent outperforms baselines under strict reliability constraints, achieving improvements of 44.23%p and 25.34%p at HCAcc@70% while baseline methods fail at these thresholds. These results highlight limitations of traditional accuracy metrics in evaluating healthcare AI agents. Our work contributes to developing trustworthy clinical agents that deliver accurate information or transparently express uncertainty when confidence is low.

AI for Statutory Simplification: A Comprehensive State Legal Corpus and Labor Benchmark

One of the emerging use cases of AI in law is for code simplification: streamlining, distilling, and simplifying complex statutory or regulatory language. One U.S. state has claimed to eliminate one third of its state code using AI. Yet we lack systematic evaluations of the accuracy, reliability, and risks of such approaches. We introduce LaborBench, a question-and-answer benchmark dataset designed to evaluate AI capabilities in this domain. We leverage a unique data source to create LaborBench: a dataset updated annually by teams of lawyers at the U.S. Department of Labor, who compile differences in unemployment insurance laws across 50 states for over 101 dimensions in a six-month process, culminating in a 200-page publication of tables. Inspired by our collaboration with one U.S. state to explore using large language models (LLMs) to simplify codes in this domain, where complexity is particularly acute, we transform the DOL publication into LaborBench. This provides a unique benchmark for AI capacity to conduct, distill, and extract realistic statutory and regulatory information. To assess the performance of retrieval augmented generation (RAG) approaches, we also compile StateCodes, a novel and comprehensive state statute and regulatory corpus of 8.7 GB, enabling much more systematic research into state codes. We then benchmark the performance of information retrieval and state-of-the-art large LLMs on this data and show that while these models are helpful as preliminary research for code simplification, the overall accuracy is far below the touted promises for LLMs as end-to-end pipelines for regulatory simplification.

See What You Need: Query-Aware Visual Intelligence through Reasoning-Perception Loops

Human video comprehension demonstrates dynamic coordination between reasoning and visual attention, adaptively focusing on query-relevant details. However, current long-form video question answering systems employ rigid pipelines that decouple reasoning from perception, leading to either information loss through premature visual abstraction or computational inefficiency through exhaustive processing. The core limitation lies in the inability to adapt visual extraction to specific reasoning requirements, different queries demand fundamentally different visual evidence from the same video content. In this work, we present CAVIA, a training-free framework that revolutionizes video understanding through reasoning, perception coordination. Unlike conventional approaches where visual processing operates independently of reasoning, CAVIA creates a closed-loop system where reasoning continuously guides visual extraction based on identified information gaps. CAVIA introduces three innovations: (1) hierarchical reasoning, guided localization to precise frames; (2) cross-modal semantic bridging for targeted extraction; (3) confidence-driven iterative synthesis. CAVIA achieves state-of-the-art performance on challenging benchmarks: EgoSchema (65.7%, +5.3%), NExT-QA (76.1%, +2.6%), and IntentQA (73.8%, +6.9%), demonstrating that dynamic reasoning-perception coordination provides a scalable paradigm for video understanding.

MedReseacher-R1: Expert-Level Medical Deep Researcher via A Knowledge-Informed Trajectory Synthesis Framework

Recent developments in Large Language Model (LLM)-based agents have shown impressive capabilities spanning multiple domains, exemplified by deep research systems that demonstrate superior performance on complex information-seeking and synthesis tasks. While general-purpose deep research agents have shown impressive capabilities, they struggle significantly with medical domain challenges, as evidenced by leading proprietary systems achieving limited accuracy on complex medical benchmarks. The key limitations are: (1) the model lacks sufficient dense medical knowledge for clinical reasoning, and (2) the framework is constrained by the absence of specialized retrieval tools tailored for medical contexts.We present a medical deep research agent that addresses these challenges through two core innovations. First, we develop a novel data synthesis framework using medical knowledge graphs, extracting the longest chains from subgraphs around rare medical entities to generate complex multi-hop question-answer pairs. Second, we integrate a custom-built private medical retrieval engine alongside general-purpose tools, enabling accurate medical information synthesis. Our approach generates 2100+ diverse trajectories across 12 medical specialties, each averaging 4.2 tool interactions.Through a two-stage training paradigm combining supervised fine-tuning and online reinforcement learning with composite rewards, our MedResearcher-R1-32B model demonstrates exceptional performance, establishing new state-of-the-art results on medical benchmarks while maintaining competitive performance on general deep research tasks. Our work demonstrates that strategic domain-specific innovations in architecture, tool design, and training data construction can enable smaller open-source models to outperform much larger proprietary systems in specialized domains.

Knowledge Graph-Infused Fine-Tuning for Structured Reasoning in Large Language Models

This paper addresses the problems of missing reasoning chains and insufficient entity-level semantic understanding in large language models when dealing with tasks that require structured knowledge. It proposes a fine-tuning algorithm framework based on knowledge graph injection. The method builds on pretrained language models and introduces structured graph information for auxiliary learning. A graph neural network is used to encode entities and their relations, constructing a graph-based semantic representation. A fusion mechanism is then designed to jointly model the knowledge graph embeddings with the contextual representations from the language model. To enhance the robustness of knowledge integration, a gating mechanism is introduced to dynamically balance the contributions of linguistic semantics and structural knowledge. This effectively mitigates conflicts between different representational spaces. During training, a joint loss function is constructed to account for both task performance and structural alignment objectives. This helps improve the accuracy of entity prediction and semantic reasoning. The study also includes a series of systematic sensitivity experiments. It evaluates the effects of learning rate, graph coverage, and structural perturbations on model performance. The results further validate the effectiveness and stability of the proposed method across tasks such as entity recognition, question answering, and language generation. Experimental findings show that the proposed structure-aware fine-tuning framework significantly enhances the model's ability to represent complex semantic units. It demonstrates better semantic consistency and contextual logic modeling in scenarios involving structural reasoning and entity extraction.

Two-Stage Quranic QA via Ensemble Retrieval and Instruction-Tuned Answer Extraction

Quranic Question Answering presents unique challenges due to the linguistic complexity of Classical Arabic and the semantic richness of religious texts. In this paper, we propose a novel two-stage framework that addresses both passage retrieval and answer extraction. For passage retrieval, we ensemble fine-tuned Arabic language models to achieve superior ranking performance. For answer extraction, we employ instruction-tuned large language models with few-shot prompting to overcome the limitations of fine-tuning on small datasets. Our approach achieves state-of-the-art results on the Quran QA 2023 Shared Task, with a MAP@10 of 0.3128 and MRR@10 of 0.5763 for retrieval, and a pAP@10 of 0.669 for extraction, substantially outperforming previous methods. These results demonstrate that combining model ensembling and instruction-tuned language models effectively addresses the challenges of low-resource question answering in specialized domains.

MedKGent: A Large Language Model Agent Framework for Constructing Temporally Evolving Medical Knowledge Graph

The rapid expansion of medical literature presents growing challenges for structuring and integrating domain knowledge at scale. Knowledge Graphs (KGs) offer a promising solution by enabling efficient retrieval, automated reasoning, and knowledge discovery. However, current KG construction methods often rely on supervised pipelines with limited generalizability or naively aggregate outputs from Large Language Models (LLMs), treating biomedical corpora as static and ignoring the temporal dynamics and contextual uncertainty of evolving knowledge. To address these limitations, we introduce MedKGent, a LLM agent framework for constructing temporally evolving medical KGs. Leveraging over 10 million PubMed abstracts published between 1975 and 2023, we simulate the emergence of biomedical knowledge via a fine-grained daily time series. MedKGent incrementally builds the KG in a day-by-day manner using two specialized agents powered by the Qwen2.5-32B-Instruct model. The Extractor Agent identifies knowledge triples and assigns confidence scores via sampling-based estimation, which are used to filter low-confidence extractions and inform downstream processing. The Constructor Agent incrementally integrates the retained triples into a temporally evolving graph, guided by confidence scores and timestamps to reinforce recurring knowledge and resolve conflicts. The resulting KG contains 156,275 entities and 2,971,384 relational triples. Quality assessments by two SOTA LLMs and three domain experts demonstrate an accuracy approaching 90\%, with strong inter-rater agreement. To evaluate downstream utility, we conduct RAG across seven medical question answering benchmarks using five leading LLMs, consistently observing significant improvements over non-augmented baselines. Case studies further demonstrate the KG's value in literature-based drug repurposing via confidence-aware causal inference.