SymptomWise: A Deterministic Reasoning Layer for Reliable and Efficient AI Systems

AI-driven symptom analysis systems face persistent challenges in reliability, interpretability, and hallucination. End-to-end generative approaches often lack traceability and may produce unsupported or inconsistent diagnostic outputs in safety-critical settings. We present SymptomWise, a framework that separates language understanding from diagnostic reasoning. The system combines expert-curated medical knowledge, deterministic codex-driven inference, and constrained use of large language models. Free-text input is mapped to validated symptom representations, then evaluated by a deterministic reasoning module operating over a finite hypothesis space to produce a ranked differential diagnosis. Language models are used only for symptom extraction and optional explanation, not for diagnostic inference. This architecture improves traceability, reduces unsupported conclusions, and enables modular evaluation of system components. Preliminary evaluation on 42 expert-authored challenging pediatric neurology cases shows meaningful overlap with clinician consensus, with the correct diagnosis appearing in the top five differentials in 88% of cases. Beyond medicine, the framework generalizes to other abductive reasoning domains and may serve as a deterministic structuring and routing layer for foundation models, improving precision and potentially reducing unnecessary computational overhead in bounded tasks.

Graph of Skills: Dependency-Aware Structural Retrieval for Massive Agent Skills

Skill usage has become a core component of modern agent systems and can substantially improve agents' ability to complete complex tasks. In real-world settings, where agents must monitor and interact with numerous personal applications, web browsers, and other environment interfaces, skill libraries can scale to thousands of reusable skills. Scaling to larger skill sets introduces two key challenges. First, loading the full skill set saturates the context window, driving up token costs, hallucination, and latency. In this paper, we present Graph of Skills (GoS), an inference-time structural retrieval layer for large skill libraries. GoS constructs an executable skill graph offline from skill packages, then at inference time retrieves a bounded, dependency-aware skill bundle through hybrid semantic-lexical seeding, reverse-weighted Personalized PageRank, and context-budgeted hydration. On SkillsBench and ALFWorld, GoS improves average reward by 43.6% over the vanilla full skill-loading baseline while reducing input tokens by 37.8%, and generalizes across three model families: Claude Sonnet, GPT-5.2 Codex, and MiniMax. Additional ablation studies across skill libraries ranging from 200 to 2,000 skills further demonstrate that GoS consistently outperforms both vanilla skills loading and simple vector retrieval in balancing reward, token efficiency, and runtime.

Investigating Autonomous Agent Contributions in the Wild: Activity Patterns and Code Change over Time

The rise of large language models for code has reshaped software development. Autonomous coding agents, able to create branches, open pull requests, and perform code reviews, now actively contribute to real-world projects. Their growing role offers a unique and timely opportunity to investigate AI-driven contributions and their effects on code quality, team dynamics, and software maintainability. In this work, we construct a novel dataset of approximately $110,000$ open-source pull requests, including associated commits, comments, reviews, issues, and file changes, collectively representing millions of lines of source code. We compare five popular coding agents, including OpenAI Codex, Claude Code, GitHub Copilot, Google Jules, and Devin, examining how their usage differs in various development aspects such as merge frequency, edited file types, and developer interaction signals, including comments and reviews. Furthermore, we emphasize that code authoring and review are only a small part of the larger software engineering process, as the resulting code must also be maintained and updated over time. Hence, we offer several longitudinal estimates of survival and churn rates for agent-generated versus human-authored code. Ultimately, our findings indicate an increasing agent activity in open-source projects, although their contributions are associated with more churn over time compared to human-authored code.

PRBench: End-to-end Paper Reproduction in Physics Research

AI agents powered by large language models exhibit strong reasoning and problem-solving capabilities, enabling them to assist scientific research tasks such as formula derivation and code generation. However, whether these agents can reliably perform end-to-end reproduction from real scientific papers remains an open question. We introduce PRBench, a benchmark of 30 expert-curated tasks spanning 11 subfields of physics. Each task requires an agent to comprehend the methodology of a published paper, implement the corresponding algorithms from scratch, and produce quantitative results matching the original publication. Agents are provided only with the task instruction and paper content, and operate in a sandboxed execution environment. All tasks are contributed by domain experts from over 20 research groups at the School of Physics, Peking University, each grounded in a real published paper and validated through end-to-end reproduction with verified ground-truth results and detailed scoring rubrics. Using an agentified assessment pipeline, we evaluate a set of coding agents on PRBench and analyze their capabilities across key dimensions of scientific reasoning and execution. The best-performing agent, OpenAI Codex powered by GPT-5.3-Codex, achieves a mean overall score of 34%. All agents exhibit a zero end-to-end callback success rate, with particularly poor performance in data accuracy and code correctness. We further identify systematic failure modes, including errors in formula implementation, inability to debug numerical simulations, and fabrication of output data. Overall, PRBench provides a rigorous benchmark for evaluating progress toward autonomous scientific research.

PostTrainBench: Can LLM Agents Automate LLM Post-Training?

AI agents have become surprisingly proficient at software engineering over the past year, largely due to improvements in reasoning capabilities. This raises a deeper question: can these systems extend their capabilities to automate AI research itself? In this paper, we explore post-training, the critical phase that turns base LLMs into useful assistants. We introduce PostTrainBench to benchmark how well LLM agents can perform post-training autonomously under bounded compute constraints (10 hours on one H100 GPU). We ask frontier agents (e.g., Claude Code with Opus 4.6) to optimize the performance of a base LLM on a particular benchmark (e.g., Qwen3-4B on AIME). Importantly, we do not provide any predefined strategies to the agents and instead give them full autonomy to find necessary information on the web, run experiments, and curate data. We find that frontier agents make substantial progress but generally lag behind instruction-tuned LLMs from leading providers: 23.2% for the best agent vs. 51.1% for official instruction-tuned models. However, agents can exceed instruction-tuned models in targeted scenarios: GPT-5.1 Codex Max achieves 89% on BFCL with Gemma-3-4B vs. 67% for the official model. We also observe several failure modes worth flagging. Agents sometimes engage in reward hacking: training on the test set, downloading existing instruction-tuned checkpoints instead of training their own, and using API keys they find to generate synthetic data without authorization. These behaviors are concerning and highlight the importance of careful sandboxing as these systems become more capable. Overall, we hope PostTrainBench will be useful for tracking progress in AI R&D automation and for studying the risks that come with it. Website and code are available at https://posttrainbench.com/.

ESAA: Event Sourcing for Autonomous Agents in LLM-Based Software Engineering

Autonomous agents based on Large Language Models (LLMs) have evolved from reactive assistants to systems capable of planning, executing actions via tools, and iterating over environment observations. However, they remain vulnerable to structural limitations: lack of native state, context degradation over long horizons, and the gap between probabilistic generation and deterministic execution requirements. This paper presents the ESAA (Event Sourcing for Autonomous Agents) architecture, which separates the agent's cognitive intention from the project's state mutation, inspired by the Event Sourcing pattern. In ESAA, agents emit only structured intentions in validated JSON (agent.result or issue.report); a deterministic orchestrator validates, persists events in an append-only log (activity.jsonl), applies file-writing effects, and projects a verifiable materialized view (roadmap.json). The proposal incorporates boundary contracts (AGENT_CONTRACT.yaml), metaprompting profiles (PARCER), and replay verification with hashing (esaa verify), ensuring the immutability of completed tasks and forensic traceability. Two case studies validate the architecture: (i) a landing page project (9 tasks, 49 events, single-agent composition) and (ii) a clinical dashboard system (50 tasks, 86 events, 4 concurrent agents across 8 phases), both concluding with run.status=success and verify_status=ok. The multi-agent case study demonstrates real concurrent orchestration with heterogeneous LLMs (Claude Sonnet 4.6, Codex GPT-5, Antigravity/Gemini 3 Pro, and Claude Opus 4.6), providing empirical evidence of the architecture's scalability beyond single-agent scenarios.

AIDev: Studying AI Coding Agents on GitHub

AI coding agents are rapidly transforming software engineering by performing tasks such as feature development, debugging, and testing. Despite their growing impact, the research community lacks a comprehensive dataset capturing how these agents are used in real-world projects. To address this gap, we introduce AIDev, a large-scale dataset focused on agent-authored pull requests (Agentic-PRs) in real-world GitHub repositories. AIDev aggregates 932,791 Agentic-PRs produced by five agents: OpenAI Codex, Devin, GitHub Copilot, Cursor, and Claude Code. These PRs span 116,211 repositories and involve 72,189 developers. In addition, AIDev includes a curated subset of 33,596 Agentic-PRs from 2,807 repositories with over 100 stars, providing further information such as comments, reviews, commits, and related issues. This dataset offers a foundation for future research on AI adoption, developer productivity, and human-AI collaboration in the new era of software engineering. > AI Agent, Agentic AI, Coding Agent, Agentic Coding, Agentic Software Engineering, Agentic Engineering

SWE-AGI: Benchmarking Specification-Driven Software Construction with MoonBit in the Era of Autonomous Agents

Although large language models (LLMs) have demonstrated impressive coding capabilities, their ability to autonomously build production-scale software from explicit specifications remains an open question. We introduce SWE-AGI, an open-source benchmark for evaluating end-to-end, specification-driven construction of software systems written in MoonBit. SWE-AGI tasks require LLM-based agents to implement parsers, interpreters, binary decoders, and SAT solvers strictly from authoritative standards and RFCs under a fixed API scaffold. Each task involves implementing 1,000-10,000 lines of core logic, corresponding to weeks or months of engineering effort for an experienced human developer. By leveraging the nascent MoonBit ecosystem, SWE-AGI minimizes data leakage, forcing agents to rely on long-horizon architectural reasoning rather than code retrieval. Across frontier models, gpt-5.3-codex achieves the best overall performance (solving 19/22 tasks, 86.4%), outperforming claude-opus-4.6 (15/22, 68.2%), and kimi-2.5 exhibits the strongest performance among open-source models. Performance degrades sharply with increasing task difficulty, particularly on hard, specification-intensive systems. Behavioral analysis further reveals that as codebases scale, code reading, rather than writing, becomes the dominant bottleneck in AI-assisted development. Overall, while specification-driven autonomous software engineering is increasingly viable, substantial challenges remain before it can reliably support production-scale development.

Automated QoR improvement in OpenROAD with coding agents

EDA development and innovation has been constrained by scarcity of expert engineering resources. While leading LLMs have demonstrated excellent performance in coding and scientific reasoning tasks, their capacity to advance EDA technology itself has been largely untested. We present AuDoPEDA, an autonomous, repository-grounded coding system built atop OpenAI models and a Codex-class agent that reads OpenROAD, proposes research directions, expands them into implementation steps, and submits executable diffs. Our contributions include (i) a closed-loop LLM framework for EDA code changes; (ii) a task suite and evaluation protocol on OpenROAD for PPA-oriented improvements; and (iii) end-to-end demonstrations with minimal human oversight. Experiments in OpenROAD achieve routed wirelength reductions of up to 5.9%, and effective clock period reductions of up to 10.0%.

130k Lines of Formal Topology in Two Weeks: Simple and Cheap Autoformalization for Everyone?

This is a brief description of a project that has already autoformalized a large portion of the general topology from the Munkres textbook (which has in total 241 pages in 7 chapters and 39 sections). The project has been running since November 21, 2025 and has as of January 4, 2026, produced 160k lines of formalized topology. Most of it (about 130k lines) have been done in two weeks,from December 22 to January 4, for an LLM subscription cost of about \$100. This includes a 3k-line proof of Urysohn's lemma, a 2k-line proof of Urysohn's Metrization theorem, over 10k-line proof of the Tietze extension theorem, and many more (in total over 1.5k lemmas/theorems). The approach is quite simple and cheap: build a long-running feedback loop between an LLM and a reasonably fast proof checker equipped with a core foundational library. The LLM is now instantiated as ChatGPT (mostly 5.2) or Claude Sonnet (4.5) run through the respective Codex or Claude Code command line interfaces. The proof checker is Chad Brown's higher-order set theory system Megalodon, and the core library is Brown's formalization of basic set theory and surreal numbers (including reals, etc). The rest is some prompt engineering and technical choices which we describe here. Based on the fast progress, low cost, virtually unknown ITP/library, and the simple setup available to everyone, we believe that (auto)formalization may become quite easy and ubiquitous in 2026, regardless of which proof assistant is used.