Wide-Field, High-Resolution Reconstruction in Computational Multi-Aperture Miniscope Using a Fourier Neural Network

Traditional fluorescence microscopy is constrained by inherent trade-offs among resolution, field-of-view, and system complexity. To navigate these challenges, we introduce a simple and low-cost computational multi-aperture miniature microscope, utilizing a microlens array for single-shot wide-field, high-resolution imaging. Addressing the challenges posed by extensive view multiplexing and non-local, shift-variant aberrations in this device, we present SV-FourierNet, a novel multi-channel Fourier neural network. SV-FourierNet facilitates high-resolution image reconstruction across the entire imaging field through its learned global receptive field. We establish a close relationship between the physical spatially-varying point-spread functions and the network's learned effective receptive field. This ensures that SV-FourierNet has effectively encapsulated the spatially-varying aberrations in our system, and learned a physically meaningful function for image reconstruction. Training of SV-FourierNet is conducted entirely on a physics-based simulator. We showcase wide-field, high-resolution video reconstructions on colonies of freely moving C. elegans and imaging of a mouse brain section. Our computational multi-aperture miniature microscope, augmented with SV-FourierNet, represents a major advancement in computational microscopy and may find broad applications in biomedical research and other fields requiring compact microscopy solutions.

CodeScope: An Execution-based Multilingual Multitask Multidimensional Benchmark for Evaluating LLMs on Code Understanding and Generation

Large Language Models (LLMs) have demonstrated remarkable performance on coding related tasks, particularly on assisting humans in programming and facilitating programming automation. However, existing benchmarks for evaluating the code understanding and generation capacities of LLMs suffer from severe limitations. First, most benchmarks are deficient as they focus on a narrow range of popular programming languages and specific tasks, whereas the real-world software development scenarios show dire need to implement systems with multilingual programming environments to satisfy diverse requirements. Practical programming practices also strongly expect multi-task settings for testing coding capabilities of LLMs comprehensively and robustly. Second, most benchmarks also fail to consider the actual executability and the consistency of execution results of the generated code. To bridge these gaps between existing benchmarks and expectations from practical applications, we introduce CodeScope, an execution-based, multilingual, multi-task, multi-dimensional evaluation benchmark for comprehensively gauging LLM capabilities on coding tasks. CodeScope covers 43 programming languages and 8 coding tasks. It evaluates the coding performance of LLMs from three dimensions (perspectives): difficulty, efficiency, and length. To facilitate execution-based evaluations of code generation, we develop MultiCodeEngine, an automated code execution engine that supports 14 programming languages. Finally, we systematically evaluate and analyze 8 mainstream LLMs on CodeScope tasks and demonstrate the superior breadth and challenges of CodeScope for evaluating LLMs on code understanding and generation tasks compared to other benchmarks. The CodeScope benchmark and datasets are publicly available at https://github.com/WeixiangYAN/CodeScope.

CodeTransOcean: A Comprehensive Multilingual Benchmark for Code Translation

Recent code translation techniques exploit neural machine translation models to translate source code from one programming language to another to satisfy production compatibility or to improve efficiency of codebase maintenance. Most existing code translation datasets only focus on a single pair of popular programming languages. To advance research on code translation and meet diverse requirements of real-world applications, we construct CodeTransOcean, a large-scale comprehensive benchmark that supports the largest variety of languages for code translation. CodeTransOcean consists of three novel multilingual datasets, namely, MultilingualTrans supporting translations between multiple popular programming languages, NicheTrans for translating between niche programming languages and popular ones, and LLMTrans for evaluating compilability of translated code by large language models (LLMs). CodeTransOcean also includes a novel cross-framework dataset, DLTrans, for translating deep learning code across different frameworks. We develop multilingual modeling approaches for code translation and demonstrate their great potential in improving the translation quality of both low-resource and high-resource language pairs and boosting the training efficiency. We also propose a novel evaluation metric Debugging Success Rate@K for program-level code translation. Last but not least, we evaluate LLM ChatGPT on our datasets and investigate its potential for fuzzy compilation predictions. We build baselines for CodeTransOcean and analyze challenges of code translation for guiding future research.

How People Perceive The Dynamic Zero-COVID Policy: A Retrospective Analysis From The Perspective of Appraisal Theory

The Dynamic Zero-COVID Policy in China spanned three years and diverse emotional responses have been observed at different times. In this paper, we retrospectively analyzed public sentiments and perceptions of the policy, especially regarding how they evolved over time, and how they related to people's lived experiences. Through sentiment analysis of 2,358 collected Weibo posts, we identified four representative points, i.e., policy initialization, sharp sentiment change, lowest sentiment score, and policy termination, for an in-depth discourse analysis through the lens of appraisal theory. In the end, we reflected on the evolving public sentiments toward the Dynamic Zero-COVID Policy and proposed implications for effective epidemic prevention and control measures for future crises.

Pre-trained Neural Recommenders: A Transferable Zero-Shot Framework for Recommendation Systems

Modern neural collaborative filtering techniques are critical to the success of e-commerce, social media, and content-sharing platforms. However, despite technical advances -- for every new application domain, we need to train an NCF model from scratch. In contrast, pre-trained vision and language models are routinely applied to diverse applications directly (zero-shot) or with limited fine-tuning. Inspired by the impact of pre-trained models, we explore the possibility of pre-trained recommender models that support building recommender systems in new domains, with minimal or no retraining, without the use of any auxiliary user or item information. Zero-shot recommendation without auxiliary information is challenging because we cannot form associations between users and items across datasets when there are no overlapping users or items. Our fundamental insight is that the statistical characteristics of the user-item interaction matrix are universally available across different domains and datasets. Thus, we use the statistical characteristics of the user-item interaction matrix to identify dataset-independent representations for users and items. We show how to learn universal (i.e., supporting zero-shot adaptation without user or item auxiliary information) representations for nodes and edges from the bipartite user-item interaction graph. We learn representations by exploiting the statistical properties of the interaction data, including user and item marginals, and the size and density distributions of their clusters.

Local Conditional Neural Fields for Versatile and Generalizable Large-Scale Reconstructions in Computational Imaging

Deep learning has transformed computational imaging, but traditional pixel-based representations limit their ability to capture continuous, multiscale details of objects. Here we introduce a novel Local Conditional Neural Fields (LCNF) framework, leveraging a continuous implicit neural representation to address this limitation. LCNF enables flexible object representation and facilitates the reconstruction of multiscale information. We demonstrate the capabilities of LCNF in solving the highly ill-posed inverse problem in Fourier ptychographic microscopy (FPM) with multiplexed measurements, achieving robust, scalable, and generalizable large-scale phase retrieval. Unlike traditional neural fields frameworks, LCNF incorporates a local conditional representation that promotes model generalization, learning multiscale information, and efficient processing of large-scale imaging data. By combining an encoder and a decoder conditioned on a learned latent vector, LCNF achieves versatile continuous-domain super-resolution image reconstruction. We demonstrate accurate reconstruction of wide field-of-view, high-resolution phase images using only a few multiplexed measurements. LCNF robustly captures the continuous object priors and eliminates various phase artifacts, even when it is trained on imperfect datasets. The framework exhibits strong generalization, reconstructing diverse objects even with limited training data. Furthermore, LCNF can be trained on a physics simulator using natural images and successfully applied to experimental measurements on biological samples. Our results highlight the potential of LCNF for solving large-scale inverse problems in computational imaging, with broad applicability in various deep-learning-based techniques.

Enhancing Generation through Summarization Duality and Explicit Outline Control

Automatically open-ended long text generation poses significant challenges due to semantic incoherence and plot implausibility. Previous works usually alleviate this problem through outlines in the form of short phrases or abstractive signals by designing unsupervised tasks, which tend to be unstable and weakly interpretable. Assuming that a summary serves as a mature outline, we introduce a two-stage, summary-enhanced outline supervised generation framework. This framework leverages the dual characteristics of the summarization task to improve outline prediction, resulting in more explicit and plausible outlines. Furthermore, we identify an underutilization issue in outline-based generation with both standard pretrained language models (e.g., GPT-2, BART) and large language models (e.g., Vicuna, ChatGPT). To address this, we propose a novel explicit outline control method for more effective utilization of generated outlines.

SwinFSR: Stereo Image Super-Resolution using SwinIR and Frequency Domain Knowledge

Stereo Image Super-Resolution (stereoSR) has attracted significant attention in recent years due to the extensive deployment of dual cameras in mobile phones, autonomous vehicles and robots. In this work, we propose a new StereoSR method, named SwinFSR, based on an extension of SwinIR, originally designed for single image restoration, and the frequency domain knowledge obtained by the Fast Fourier Convolution (FFC). Specifically, to effectively gather global information, we modify the Residual Swin Transformer blocks (RSTBs) in SwinIR by explicitly incorporating the frequency domain knowledge using the FFC and employing the resulting residual Swin Fourier Transformer blocks (RSFTBs) for feature extraction. Besides, for the efficient and accurate fusion of stereo views, we propose a new cross-attention module referred to as RCAM, which achieves highly competitive performance while requiring less computational cost than the state-of-the-art cross-attention modules. Extensive experimental results and ablation studies demonstrate the effectiveness and efficiency of our proposed SwinFSR.

MoGDE: Boosting Mobile Monocular 3D Object Detection with Ground Depth Estimation

Monocular 3D object detection (Mono3D) in mobile settings (e.g., on a vehicle, a drone, or a robot) is an important yet challenging task. Due to the near-far disparity phenomenon of monocular vision and the ever-changing camera pose, it is hard to acquire high detection accuracy, especially for far objects. Inspired by the insight that the depth of an object can be well determined according to the depth of the ground where it stands, in this paper, we propose a novel Mono3D framework, called MoGDE, which constantly estimates the corresponding ground depth of an image and then utilizes the estimated ground depth information to guide Mono3D. To this end, we utilize a pose detection network to estimate the pose of the camera and then construct a feature map portraying pixel-level ground depth according to the 3D-to-2D perspective geometry. Moreover, to improve Mono3D with the estimated ground depth, we design an RGB-D feature fusion network based on the transformer structure, where the long-range self-attention mechanism is utilized to effectively identify ground-contacting points and pin the corresponding ground depth to the image feature map. We conduct extensive experiments on the real-world KITTI dataset. The results demonstrate that MoGDE can effectively improve the Mono3D accuracy and robustness for both near and far objects. MoGDE yields the best performance compared with the state-of-the-art methods by a large margin and is ranked number one on the KITTI 3D benchmark.

Robust single-shot 3D fluorescence imaging in scattering media with a simulator-trained neural network

Imaging through scattering is a pervasive and difficult problem in many biological applications. The high background and the exponentially attenuated target signals due to scattering fundamentally limits the imaging depth of fluorescence microscopy. Light-field systems are favorable for high-speed volumetric imaging, but the 2D-to-3D reconstruction is fundamentally ill-posed and scattering exacerbates the condition of the inverse problem. Here, we develop a scattering simulator that models low-contrast target signals buried in heterogeneous strong background. We then train a deep neural network solely on synthetic data to descatter and reconstruct a 3D volume from a single-shot light-field measurement with low signal-to-background ratio (SBR). We apply this network to our previously developed Computational Miniature Mesoscope and demonstrate the robustness of our deep learning algorithm on a 75 micron thick fixed mouse brain section and on bulk scattering phantoms with different scattering conditions. The network can robustly reconstruct emitters in 3D with a 2D measurement of SBR as low as 1.05 and as deep as a scattering length. We analyze fundamental tradeoffs based on network design factors and out-of-distribution data that affect the deep learning model's generalizability to real experimental data. Broadly, we believe that our simulator-based deep learning approach can be applied to a wide range of imaging through scattering techniques where experimental paired training data is lacking.