A Visual Analytics Design for Connecting Healthcare Team Communication to Patient Outcomes

Communication among healthcare professionals (HCPs) is crucial for the quality of patient treatment. Surrounding each patient's treatment, communication among HCPs can be examined as temporal networks, constructed from Electronic Health Record (EHR) access logs. This paper introduces a visual analytics system designed to study the effectiveness and efficiency of temporal communication networks mediated by the EHR system. We present a method that associates network measures with patient survival outcomes and devises effectiveness metrics based on these associations. To analyze communication efficiency, we extract the latencies and frequencies of EHR accesses. Our visual analytics system is designed to assist in inspecting and understanding the composed communication effectiveness metrics and to enable the exploration of communication efficiency by encoding latencies and frequencies in an information flow diagram. We demonstrate and evaluate our system through multiple case studies and an expert review.

Visual Analytics for Efficient Image Exploration and User-Guided Image Captioning

Recent advancements in pre-trained large-scale language-image models have ushered in a new era of visual comprehension, offering a significant leap forward. These breakthroughs have proven particularly instrumental in addressing long-standing challenges that were previously daunting. Leveraging these innovative techniques, this paper tackles two well-known issues within the realm of visual analytics: (1) the efficient exploration of large-scale image datasets and identification of potential data biases within them; (2) the evaluation of image captions and steering of their generation process. On the one hand, by visually examining the captions automatically generated from language-image models for an image dataset, we gain deeper insights into the semantic underpinnings of the visual contents, unearthing data biases that may be entrenched within the dataset. On the other hand, by depicting the association between visual contents and textual captions, we expose the weaknesses of pre-trained language-image models in their captioning capability and propose an interactive interface to steer caption generation. The two parts have been coalesced into a coordinated visual analytics system, fostering mutual enrichment of visual and textual elements. We validate the effectiveness of the system with domain practitioners through concrete case studies with large-scale image datasets.

NeuralMatrix: Moving Entire Neural Networks to General Matrix Multiplication for Efficient Inference

In this study, we introduce NeuralMatrix, a novel framework that enables the computation of versatile deep neural networks (DNNs) on a single general matrix multiplication (GEMM) accelerator. The proposed approach overcomes the specificity limitations of ASIC-based accelerators while achieving application-specific acceleration levels compared to general-purpose processors such as CPUs and GPUs. We address the challenges of mapping both linear and nonlinear operations in DNN computation to general matrix multiplications and the impact of using a GEMM accelerator on DNN inference accuracy. Extensive experiments are conducted on various DNN models from three popular categories (i.e., CNN, Transformers, and GNN) as illustrative backbone models. Our results demonstrate that DNNs suffer only up to a 2.02% accuracy loss after being converted to general matrix multiplication, while achieving 113x to 19.44x improvements in throughput per power compared to CPUs and GPUs.

How Does Attention Work in Vision Transformers? A Visual Analytics Attempt

Vision transformer (ViT) expands the success of transformer models from sequential data to images. The model decomposes an image into many smaller patches and arranges them into a sequence. Multi-head self-attentions are then applied to the sequence to learn the attention between patches. Despite many successful interpretations of transformers on sequential data, little effort has been devoted to the interpretation of ViTs, and many questions remain unanswered. For example, among the numerous attention heads, which one is more important? How strong are individual patches attending to their spatial neighbors in different heads? What attention patterns have individual heads learned? In this work, we answer these questions through a visual analytics approach. Specifically, we first identify what heads are more important in ViTs by introducing multiple pruning-based metrics. Then, we profile the spatial distribution of attention strengths between patches inside individual heads, as well as the trend of attention strengths across attention layers. Third, using an autoencoder-based learning solution, we summarize all possible attention patterns that individual heads could learn. Examining the attention strengths and patterns of the important heads, we answer why they are important. Through concrete case studies with experienced deep learning experts on multiple ViTs, we validate the effectiveness of our solution that deepens the understanding of ViTs from head importance, head attention strength, and head attention pattern.

Visual Analytics of Neuron Vulnerability to Adversarial Attacks on Convolutional Neural Networks

Adversarial attacks on a convolutional neural network (CNN) -- injecting human-imperceptible perturbations into an input image -- could fool a high-performance CNN into making incorrect predictions. The success of adversarial attacks raises serious concerns about the robustness of CNNs, and prevents them from being used in safety-critical applications, such as medical diagnosis and autonomous driving. Our work introduces a visual analytics approach to understanding adversarial attacks by answering two questions: (1) which neurons are more vulnerable to attacks and (2) which image features do these vulnerable neurons capture during the prediction? For the first question, we introduce multiple perturbation-based measures to break down the attacking magnitude into individual CNN neurons and rank the neurons by their vulnerability levels. For the second, we identify image features (e.g., cat ears) that highly stimulate a user-selected neuron to augment and validate the neuron's responsibility. Furthermore, we support an interactive exploration of a large number of neurons by aiding with hierarchical clustering based on the neurons' roles in the prediction. To this end, a visual analytics system is designed to incorporate visual reasoning for interpreting adversarial attacks. We validate the effectiveness of our system through multiple case studies as well as feedback from domain experts.

Acceleration of cerebral blood flow and arterial transit time maps estimation from multiple post-labeling delay arterial spin-labeled MRI via deep learning

Purpose: Arterial spin labeling (ASL) perfusion imaging indicates direct and absolute measurement of cerebral blood flow (CBF). Arterial transit time (ATT) is a related physiological parameter reflecting the duration for the labeled spins to reach the brain region of interest. Multiple post-labeling delay (PLDs) can provide robust measures of both CBF and ATT, allowing for optimization of regional CBF modeling based on ATT. The prolonged acquisition time can potentially reduce the quality and accuracy of the CBF and ATT estimation. We proposed a novel network to significantly reduce the number of PLDs with higher signal-to-noise ratio (SNR). Method: CBF and ATT estimations were performed for one PLD and two PLDs sepa-rately. Each model was trained independently to learn the nonlinear transformation from perfusion weighted image (PWI) to CBF and ATT images. Results: Both one-PLD and two-PLD models outperformed the conventional method visually on CBF and two-PLD model showed more accurate structure on ATT estima-tion. The proposed method significantly reduces the number of PLDs from 6 to 2 on ATT and even to single PLD on CBF without sacrificing the SNR. Conclusion: It is feasible to generate CBF and ATT maps with reduced PLDs using deep learning with high quality.

A Domain-Theoretic Framework for Robustness Analysis of Neural Networks

We present a domain-theoretic framework for validated robustness analysis of neural networks. We first analyze the global robustness of a general class of networks. Then, using the fact that, over finite-dimensional Banach spaces, the domain-theoretic L-derivative coincides with Clarke's generalized gradient, we extend our framework for attack-agnostic local robustness analysis. Our framework is ideal for designing algorithms which are correct by construction. We exemplify this claim by developing a validated algorithm for estimation of Lipschitz constant of feedforward regressors. We prove the completeness of the algorithm over differentiable networks, and also over general position ReLU networks. Within our domain model, differentiable and non-differentiable networks can be analyzed uniformly. We implement our algorithm using arbitrary-precision interval arithmetic, and present the results of some experiments. Our implementation is truly validated, as it handles floating-point errors as well.

Maximal function pooling with applications

Inspired by the Hardy-Littlewood maximal function, we propose a novel pooling strategy which is called maxfun pooling. It is presented both as a viable alternative to some of the most popular pooling functions, such as max pooling and average pooling, and as a way of interpolating between these two algorithms. We demonstrate the features of maxfun pooling with two applications: first in the context of convolutional sparse coding, and then for image classification.

A Learning-from-noise Dilated Wide Activation Network for denoising Arterial Spin Labeling (ASL) Perfusion Images

Arterial spin labeling (ASL) perfusion MRI provides a non-invasive way to quantify cerebral blood flow (CBF) but it still suffers from a low signal-to-noise-ratio (SNR). Using deep machine learning (DL), several groups have shown encouraging denoising results. Interestingly, the improvement was obtained when the deep neural network was trained using noise-contaminated surrogate reference because of the lack of golden standard high quality ASL CBF images. More strikingly, the output of these DL ASL networks (ASLDN) showed even higher SNR than the surrogate reference. This phenomenon indicates a learning-from-noise capability of deep networks for ASL CBF image denoising, which can be further enhanced by network optimization. In this study, we proposed a new ASLDN to test whether similar or even better ASL CBF image quality can be achieved in the case of highly noisy training reference. Different experiments were performed to validate the learning-from-noise hypothesis. The results showed that the learning-from-noise strategy produced better output quality than ASLDN trained with relatively high SNR reference.

Learning Furniture Compatibility with Graph Neural Networks

We propose a graph neural network (GNN) approach to the problem of predicting the stylistic compatibility of a set of furniture items from images. While most existing results are based on siamese networks which evaluate pairwise compatibility between items, the proposed GNN architecture exploits relational information among groups of items. We present two GNN models, both of which comprise a deep CNN that extracts a feature representation for each image, a gated recurrent unit (GRU) network that models interactions between the furniture items in a set, and an aggregation function that calculates the compatibility score. In the first model, a generalized contrastive loss function that promotes the generation of clustered embeddings for items belonging to the same furniture set is introduced. Also, in the first model, the edge function between nodes in the GRU and the aggregation function are fixed in order to limit model complexity and allow training on smaller datasets; in the second model, the edge function and aggregation function are learned directly from the data. We demonstrate state-of-the art accuracy for compatibility prediction and "fill in the blank" tasks on the Bonn and Singapore furniture datasets. We further introduce a new dataset, called the Target Furniture Collections dataset, which contains over 6000 furniture items that have been hand-curated by stylists to make up 1632 compatible sets. We also demonstrate superior prediction accuracy on this dataset.