MetaOOD: Automatic Selection of OOD Detection Models

How can we automatically select an out-of-distribution (OOD) detection model for various underlying tasks? This is crucial for maintaining the reliability of open-world applications by identifying data distribution shifts, particularly in critical domains such as online transactions, autonomous driving, and real-time patient diagnosis. Despite the availability of numerous OOD detection methods, the challenge of selecting an optimal model for diverse tasks remains largely underexplored, especially in scenarios lacking ground truth labels. In this work, we introduce MetaOOD, the first zero-shot, unsupervised framework that utilizes meta-learning to automatically select an OOD detection model. As a meta-learning approach, MetaOOD leverages historical performance data of existing methods across various benchmark OOD datasets, enabling the effective selection of a suitable model for new datasets without the need for labeled data at the test time. To quantify task similarities more accurately, we introduce language model-based embeddings that capture the distinctive OOD characteristics of both datasets and detection models. Through extensive experimentation with 24 unique test dataset pairs to choose from among 11 OOD detection models, we demonstrate that MetaOOD significantly outperforms existing methods and only brings marginal time overhead. Our results, validated by Wilcoxon statistical tests, show that MetaOOD surpasses a diverse group of 11 baselines, including established OOD detectors and advanced unsupervised selection methods.

A Comparative Study on Enhancing Prediction in Social Network Advertisement through Data Augmentation

In the ever-evolving landscape of social network advertising, the volume and accuracy of data play a critical role in the performance of predictive models. However, the development of robust predictive algorithms is often hampered by the limited size and potential bias present in real-world datasets. This study presents and explores a generative augmentation framework of social network advertising data. Our framework explores three generative models for data augmentation - Generative Adversarial Networks (GANs), Variational Autoencoders (VAEs), and Gaussian Mixture Models (GMMs) - to enrich data availability and diversity in the context of social network advertising analytics effectiveness. By performing synthetic extensions of the feature space, we find that through data augmentation, the performance of various classifiers has been quantitatively improved. Furthermore, we compare the relative performance gains brought by each data augmentation technique, providing insights for practitioners to select appropriate techniques to enhance model performance. This paper contributes to the literature by showing that synthetic data augmentation alleviates the limitations imposed by small or imbalanced datasets in the field of social network advertising. At the same time, this article also provides a comparative perspective on the practicality of different data augmentation methods, thereby guiding practitioners to choose appropriate techniques to enhance model performance.

Exploring Diverse Methods in Visual Question Answering

This study explores innovative methods for improving Visual Question Answering (VQA) using Generative Adversarial Networks (GANs), autoencoders, and attention mechanisms. Leveraging a balanced VQA dataset, we investigate three distinct strategies. Firstly, GAN-based approaches aim to generate answer embeddings conditioned on image and question inputs, showing potential but struggling with more complex tasks. Secondly, autoencoder-based techniques focus on learning optimal embeddings for questions and images, achieving comparable results with GAN due to better ability on complex questions. Lastly, attention mechanisms, incorporating Multimodal Compact Bilinear pooling (MCB), address language priors and attention modeling, albeit with a complexity-performance trade-off. This study underscores the challenges and opportunities in VQA and suggests avenues for future research, including alternative GAN formulations and attentional mechanisms.

Explainable Graph Neural Network for Alzheimer's Disease And Related Dementias Risk Prediction

Alzheimer's disease and related dementias (ADRD) ranks as the sixth leading cause of death in the US, underlining the importance of accurate ADRD risk prediction. While recent advancement in ADRD risk prediction have primarily relied on imaging analysis, yet not all patients undergo medical imaging before an ADRD diagnosis. Merging machine learning with claims data can reveal additional risk factors and uncover interconnections among diverse medical codes. Our goal is to utilize Graph Neural Networks (GNNs) with claims data for ADRD risk prediction. Addressing the lack of human-interpretable reasons behind these predictions, we introduce an innovative method to evaluate relationship importance and its influence on ADRD risk prediction, ensuring comprehensive interpretation. We employed Variationally Regularized Encoder-decoder Graph Neural Network (VGNN) for estimating ADRD likelihood. We created three scenarios to assess the model's efficiency, using Random Forest and Light Gradient Boost Machine as baselines. We further used our relation importance method to clarify the key relationships for ADRD risk prediction. VGNN surpassed other baseline models by 10% in the area under the receiver operating characteristic. The integration of the GNN model and relation importance interpretation could potentially play an essential role in providing valuable insight into factors that may contribute to or delay ADRD progression. Employing a GNN approach with claims data enhances ADRD risk prediction and provides insights into the impact of interconnected medical code relationships. This methodology not only enables ADRD risk modeling but also shows potential for other image analysis predictions using claims data.

Advancing Biomedicine with Graph Representation Learning: Recent Progress, Challenges, and Future Directions

Graph representation learning (GRL) has emerged as a pivotal field that has contributed significantly to breakthroughs in various fields, including biomedicine. The objective of this survey is to review the latest advancements in GRL methods and their applications in the biomedical field. We also highlight key challenges currently faced by GRL and outline potential directions for future research.

In-Process Global Interpretation for Graph Learning via Distribution Matching

Graphs neural networks (GNNs) have emerged as a powerful graph learning model due to their superior capacity in capturing critical graph patterns. To gain insights about the model mechanism for interpretable graph learning, previous efforts focus on post-hoc local interpretation by extracting the data pattern that a pre-trained GNN model uses to make an individual prediction. However, recent works show that post-hoc methods are highly sensitive to model initialization and local interpretation can only explain the model prediction specific to a particular instance. In this work, we address these limitations by answering an important question that is not yet studied: how to provide global interpretation of the model training procedure? We formulate this problem as in-process global interpretation, which targets on distilling high-level and human-intelligible patterns that dominate the training procedure of GNNs. We further propose Graph Distribution Matching (GDM) to synthesize interpretive graphs by matching the distribution of the original and interpretive graphs in the feature space of the GNN as its training proceeds. These few interpretive graphs demonstrate the most informative patterns the model captures during training. Extensive experiments on graph classification datasets demonstrate multiple advantages of the proposed method, including high explanation accuracy, time efficiency and the ability to reveal class-relevant structure.

Mining On Alzheimer's Diseases Related Knowledge Graph to Identity Potential AD-related Semantic Triples for Drug Repurposing

To date, there are no effective treatments for most neurodegenerative diseases. Knowledge graphs can provide comprehensive and semantic representation for heterogeneous data, and have been successfully leveraged in many biomedical applications including drug repurposing. Our objective is to construct a knowledge graph from literature to study relations between Alzheimer's disease (AD) and chemicals, drugs and dietary supplements in order to identify opportunities to prevent or delay neurodegenerative progression. We collected biomedical annotations and extracted their relations using SemRep via SemMedDB. We used both a BERT-based classifier and rule-based methods during data preprocessing to exclude noise while preserving most AD-related semantic triples. The 1,672,110 filtered triples were used to train with knowledge graph completion algorithms (i.e., TransE, DistMult, and ComplEx) to predict candidates that might be helpful for AD treatment or prevention. Among three knowledge graph completion models, TransE outperformed the other two (MR = 13.45, Hits@1 = 0.306). We leveraged the time-slicing technique to further evaluate the prediction results. We found supporting evidence for most highly ranked candidates predicted by our model which indicates that our approach can inform reliable new knowledge. This paper shows that our graph mining model can predict reliable new relationships between AD and other entities (i.e., dietary supplements, chemicals, and drugs). The knowledge graph constructed can facilitate data-driven knowledge discoveries and the generation of novel hypotheses.

Knowledge Graph-based Neurodegenerative Diseases and Diet Relationship Discovery

To date, there are no effective treatments for most neurodegenerative diseases. However, certain foods may be associated with these diseases and bring an opportunity to prevent or delay neurodegenerative progression. Our objective is to construct a knowledge graph for neurodegenerative diseases using literature mining to study their relations with diet. We collected biomedical annotations (Disease, Chemical, Gene, Species, SNP&Mutation) in the abstracts from 4,300 publications relevant to both neurodegenerative diseases and diet using PubTator, an NIH-supported tool that can extract biomedical concepts from literature. A knowledge graph was created from these annotations. Graph embeddings were then trained with the node2vec algorithm to support potential concept clustering and similar concept identification. We found several food-related species and chemicals that might come from diet and have an impact on neurodegenerative diseases.

AutoML using Metadata Language Embeddings

As a human choosing a supervised learning algorithm, it is natural to begin by reading a text description of the dataset and documentation for the algorithms you might use. We demonstrate that the same idea improves the performance of automated machine learning methods. We use language embeddings from modern NLP to improve state-of-the-art AutoML systems by augmenting their recommendations with vector embeddings of datasets and of algorithms. We use these embeddings in a neural architecture to learn the distance between best-performing pipelines. The resulting (meta-)AutoML framework improves on the performance of existing AutoML frameworks. Our zero-shot AutoML system using dataset metadata embeddings provides good solutions instantaneously, running in under one second of computation. Performance is competitive with AutoML systems OBOE, AutoSklearn, AlphaD3M, and TPOT when each framework is allocated a minute of computation. We make our data, models, and code publicly available.