Abstract:Despite recent progress in backdoor attacks, existing methods remain susceptible to post-training defenses that erase the backdoor through fine-tuning or pruning. We revisit the core objectives of backdoor attacks and derive principled criteria characterizing optimal sample-specific trigger construction under a Bayes-optimal model of the victim's training. Our analysis reveals that both attack success and clean-accuracy preservation are simultaneously optimized when triggered samples are steered into low-density regions of the clean data distribution, a distributional condition that controls all moments of the poisoned distribution at once rather than a handful of input-space summary statistics. We introduce a bilevel optimization framework that estimates density ratios via conditional time-score matching and optimizes a mixture-model objective to place triggered samples in these sparse regions. Extensive evaluations on MNIST, CIFAR-10, GTSRB, and TinyImageNet demonstrate that our method achieves above 99\% attack success rate before defense and retains 50--85 percentage points higher post-defense ASR than the strongest baselines under fine-tuning defenses. Against neuron-pruning defenses, the method exhibits complete immunity, with zero neurons identified for removal across all pruning thresholds. These results expose a fundamental gap in current defense paradigms and underscore the need for defenses that operate beyond the support of the clean distribution.
Abstract:Epigenetic clocks based on DNA methylation have emerged as powerful tools for estimating biological age, with broad applications in aging research, age-related disease studies, and longevity science. Despite advances across machine learning approaches to epigenetic age prediction, spanning penalised linear regression, deep feedforward networks, residual architectures, and graph neural networks, no existing method jointly models co-methylation graph structure and site-specific DNA sequence context within a unified framework. We propose a unified sequence--graph integration framework for epigenetic age prediction that addresses this gap, integrating eight-dimensional DNA sequence statistical features through a lightweight gated modulation mechanism that adaptively scales each site's methylation signal according to its sequence-determined biological relevance prior to graph convolution. Evaluated on 3,707 blood methylation samples against a comprehensive set of baselines, our method achieves a test MAE of 3.149 years, a 12.8\% improvement over the strongest graph-based baseline. Biologically informed statistical features outperform CNN-based sequence encoding, demonstrating that handcrafted sequence features are more effective than end-to-end learned representations in this data regime. Post-hoc interpretability analysis identifies CpG density and local adenine frequency as features with age-dependent importance shifts, consistent with known mechanisms of age-related hypermethylation at CpG-dense promoter regions. Our code is at https://github.com/yaoli2022/graphage-seq.
Abstract:Biomedical knowledge graphs underwrite drug repurposing and clinical decision support, yet the upstream ontologies they depend on update on independent cycles that add millions of edges and deprecate hundreds of thousands more between releases. Yet existing continual graph learning has been studied almost exclusively on synthetic random splits of static, generic KGs, a regime that cannot reproduce the asynchronous, structured evolution real biomedical KGs undergo. To this end, we introduce PrimeKG-CL, a CGL benchmark built from nine authoritative biomedical databases (129K+ nodes, 8.1M+ edges, 10 node types, 30 relation types) with two genuine temporal snapshots (June 2021, July 2023; 5.83M edges added, 889K removed, 7.21M persistent), 10 entity-type-grouped tasks, multimodal node features, and a per-task persistent/added/removed test stratification. On three tasks (biomedical relationship prediction, entity classification, KGQA), we evaluate six CL strategies across four KGE decoders, plus LKGE, an LLM-RAG agent, and CMKL. We find that decoder choice and continual learning strategy interact strongly: no single strategy performs best across all decoders, and mismatched combinations can significantly degrade performance. Moreover, only DistMult exhibits a clear separation between persistent and deprecated knowledge, indicating that standard metrics conflate retention of still-valid facts with failure to forget outdated ones; this effect is absent under RotatE. In addition, multimodal features improve entity-level tasks by up to 60%, and a recent CKGE framework (IncDE) failed to scale to our 5.67M-triple base task across five attempts up to 350GB RAM. Data, pipeline, baselines, and the stratified split are released openly. Dataset:huggingface.co/datasets/yradwan147/PrimeKGCL|Code:github.com/yradwan147/primekg-cl-neurips2026
Abstract:Biomedical knowledge graphs are increasingly large, dynamic, and multimodal, driven by rapid advances in biotechnology such as high-throughput sequencing. Machine learning models can infer previously unobserved biomedical relationships and characterize biomedical entities in these graphs, but existing knowledge graph embedding methods and their continual learning extensions either assume static graph structure or fail to exploit multimodal information under evolving data distributions. They also apply uniform regularization across all model parameters, ignoring that different modalities may exhibit distinct forgetting dynamics as the graph evolves. We propose the Continual Multimodal Knowledge Graph Learner (CMKL), a CL framework for biomedical KGs that natively encodes structure, text, and molecules, fuses them through a Mixture-of-Experts (MoE) router, and protects previously learned knowledge with standard EWC regularization and a K-means-diverse multimodal replay buffer. We evaluate CMKL on a 129K-entity biomedical continual benchmark with 10 tasks. On continual biomedical entity classification, CMKL reaches AP 0.591 versus 0.370 for the strongest structural baseline, a 60% gain that is driven by access to multimodal features and preserved across the sequence with near-zero forgetting (AF 0.008). On continual relationship prediction, CMKL reaches AP $0.062$, matching Naive Sequential and EWC (0.058) within seed noise and outperforming Joint Training (0.047, p=0.045) and LKGE (0.039). A frozen-text ablation reaches AP 0.136, more than double any jointly trained model, yet that signal is unreachable by margin-ranking gradients: the greedy-modality asymmetry lives at the representation level, not the fusion level, and MoE routing manages it by suppressing the unreachable modality without forcing it through a learned bottleneck. Code: github.com/yradwan147/cmkl-neurips2026
Abstract:Scientific publication compresses a branching, iterative research process into a linear narrative, discarding the majority of what was discovered along the way. This compilation imposes two structural costs: a Storytelling Tax, where failed experiments, rejected hypotheses, and the branching exploration process are discarded to fit a linear narrative; and an Engineering Tax, where the gap between reviewer-sufficient prose and agent-sufficient specification leaves critical implementation details unwritten. Tolerable for human readers, these costs become critical when AI agents must understand, reproduce, and extend published work. We introduce the Agent-Native Research Artifact (Ara), a protocol that replaces the narrative paper with a machine-executable research package structured around four layers: scientific logic, executable code with full specifications, an exploration graph that preserves the failures compilation discards, and evidence grounding every claim in raw outputs. Three mechanisms support the ecosystem: a Live Research Manager that captures decisions and dead ends during ordinary development; an Ara Compiler that translates legacy PDFs and repos into Aras; and an Ara-native review system that automates objective checks so human reviewers can focus on significance, novelty, and taste. On PaperBench and RE-Bench, Ara raises question-answering accuracy from 72.4% to 93.7% and reproduction success from 57.4% to 64.4%. On RE-Bench's five open-ended extension tasks, preserved failure traces in Ara accelerate progress, but can also constrain a capable agent from stepping outside the prior-run box depending on the agent's capabilities.
Abstract:Recently, Interleaved-modal Chain-of-Thought (ICoT) reasoning has achieved remarkable success by leveraging both multimodal inputs and outputs, attracting increasing attention. While achieving promising performance, current ICoT methods still suffer from two major limitations: (1) Static Visual Thought Positioning, which statically inserts visual information at fixed steps, resulting in inefficient and inflexible reasoning; and (2) Broken Visual Thought Representation, which involves discontinuous and semantically incoherent visual tokens. To address these limitations, we introduce Interleaved-modal Chain-of-Thought reasoning with Dynamic and Precise Visual Thoughts (DaP-ICoT), which incorporates two key components: (1) Dynamic Visual Thought Integration adaptively introduces visual inputs based on reasoning needs, reducing redundancy and improving efficiency. (2) Precise Visual Thought Guidance ensures visual semantically coherent and contextually aligned representations. Experiments across multiple benchmarks and models demonstrate that DaP-ICoT achieves state-of-the-art performance. In addition, DaP-ICoT significantly reduces the number of inserted images, leading to a 72.6% decrease in token consumption, enabling more efficient ICoT reasoning.
Abstract:Recently, progress has been made on the Intra Pattern Copy (IPC) tool for JPEG XS, an image compression standard designed for low-latency and low-complexity coding. IPC performs wavelet-domain intra compensation predictions to reduce spatial redundancy in screen content. A key module of IPC is the displacement vector (DV) search, which aims to solve the optimal prediction reference offset. However, the DV search process is computationally intensive, posing challenges for practical hardware deployment. In this paper, we propose an efficient pipelined FPGA architecture design for the DV search module to promote the practical deployment of IPC. Optimized memory organization, which leverages the IPC computational characteristics and data inherent reuse patterns, is further introduced to enhance the performance. Experimental results show that our proposed architecture achieves a throughput of 38.3 Mpixels/s with a power consumption of 277 mW, demonstrating its feasibility for practical hardware implementation in IPC and other predictive coding tools, and providing a promising foundation for ASIC deployment.
Abstract:Force/torque feedback can substantially improve Vision-Language-Action (VLA) models on contact-rich manipulation, but most existing approaches fuse all modalities at a single operating frequency. This design ignores the mismatched sampling rates of real robot sensors, forcing downsampling of the high-frequency contact cues needed for reactive correction. Combined with common VLM-action-expert (AE) pipelines that execute action chunks largely open loop between expensive VLM updates, unified-frequency fusion often yields delayed responses to impacts, stick-slip, and force spikes. We propose FAVLA, a force-adaptive fast-slow VLA that decouples slow perception planning from fast contact-aware control. FAVLA runs a slow VLM at a fixed low frequency to encode modalities to produce latent representations and to predict near-future force variation. A fast AE then executes at a variable high frequency, conditioning on the latest force sequence data to generate reactive actions. We further introduce a force adapter that injects high-frequency force features into multiple AE layers, and adaptively schedules the AE's execution frequency based on the VLM's predicted force variation. Extensive experiments on contact-rich tasks demonstrate that FAVLA significantly outperforms baselines, achieving superior reactivity and success rates, especially with a smaller contact force during manipulation.
Abstract:Recent advances in text-to-speech (TTS) have yielded remarkable improvements in naturalness and intelligibility. Building on these achievements, research has increasingly shifted toward enhancing the expressiveness of generated speech, such as dialectal and emotional TTS. However, cross-style synthesis combining both dialect and emotion remains challenging and largely unexplored, mainly due to the scarcity of dialectal data with emotional labels. To address this, we propose Hierarchical Expressive Vector (HE-Vector), a two-stage method for Emotional Dialectal TTS. In the first stage, we construct different task vectors to model dialectal and emotional styles independently, and then enhance single-style synthesis by adjusting their weights, a method we refer to as Expressive Vector (E-Vector). For the second stage, we hierarchically integrate these vectors to achieve controllable emotionally expressive dialect synthesis without requiring jointly labeled data, corresponding to Hierarchical Expressive Vector (HE-Vector). Experimental results demonstrate that HE-Vectors achieve superior performance in dialect synthesis, and promising results in synthesizing emotionally expressive dialectal speech in a zero-shot setting.
Abstract:Rehearsal-based Continual Learning (CL) maintains a limited memory buffer to store replay samples for knowledge retention, making these approaches heavily reliant on the quality of the stored samples. Current Rehearsal-based CL methods typically construct the memory buffer by selecting a representative subset (referred to as coresets), aiming to approximate the training efficacy of the full dataset with minimal storage overhead. However, mainstream Coreset Selection (CS) methods generally formulate the CS problem as a bi-level optimization problem that relies on numerous inner and outer iterations to solve, leading to substantial computational cost thus limiting their practical efficiency. In this paper, we aim to provide a more efficient selection logic and scheme for coreset construction. To this end, we first analyze the Mean Squared Error (MSE) between the buffer-trained model and the Bayes-optimal model through the perspective of localized error decomposition to investigate the contribution of samples from different regions to MSE suppression. Further theoretical and experimental analyses demonstrate that samples with high probability density play a dominant role in error suppression. Inspired by this, we propose the Probability Density-Aware Coreset (PDAC) method. PDAC leverages the Projected Gaussian Mixture (PGM) model to estimate each sample's joint density, enabling efficient density-prioritized buffer selection. Finally, we introduce the streaming Expectation Maximization (EM) algorithm to enhance the adaptability of PGM parameters to streaming data, yielding Streaming PDAC (SPDAC) for streaming scenarios. Extensive comparative experiments show that our methods outperforms other baselines across various CL settings while ensuring favorable efficiency.