Flexible Operator Fusion for Fast Sparse Transformer with Diverse Masking on GPU

Large language models are popular around the world due to their powerful understanding capabilities. As the core component of LLMs, accelerating Transformer through parallelization has gradually become a hot research topic. Mask layers introduce sparsity into Transformer to reduce calculations. However, previous works rarely focus on the performance optimization of sparse Transformer. Moreover, rule-based mechanisms ignore the fusion opportunities of mixed-type operators and fail to adapt to various sequence lengths. To address the above problems, we propose STOF, a framework that incorporates optimizations for Sparse Transformer via flexible masking and operator fusion on GPU. We firstly unify the storage format and kernel implementation for the multi-head attention. Then, we map fusion schemes to compilation templates and determine the optimal parameter setting through a two-stage search engine. The experimental results show that compared to the state-of-the-art work, STOF achieves maximum speedups of 1.7x in MHA computation and 1.5x in end-to-end inference.

Rethinking Circuit Completeness in Language Models: AND, OR, and ADDER Gates

Circuit discovery has gradually become one of the prominent methods for mechanistic interpretability, and research on circuit completeness has also garnered increasing attention. Methods of circuit discovery that do not guarantee completeness not only result in circuits that are not fixed across different runs but also cause key mechanisms to be omitted. The nature of incompleteness arises from the presence of OR gates within the circuit, which are often only partially detected in standard circuit discovery methods. To this end, we systematically introduce three types of logic gates: AND, OR, and ADDER gates, and decompose the circuit into combinations of these logical gates. Through the concept of these gates, we derive the minimum requirements necessary to achieve faithfulness and completeness. Furthermore, we propose a framework that combines noising-based and denoising-based interventions, which can be easily integrated into existing circuit discovery methods without significantly increasing computational complexity. This framework is capable of fully identifying the logic gates and distinguishing them within the circuit. In addition to the extensive experimental validation of the framework's ability to restore the faithfulness, completeness, and sparsity of circuits, using this framework, we uncover fundamental properties of the three logic gates, such as their proportions and contributions to the output, and explore how they behave among the functionalities of language models.

Seed1.5-VL Technical Report

We present Seed1.5-VL, a vision-language foundation model designed to advance general-purpose multimodal understanding and reasoning. Seed1.5-VL is composed with a 532M-parameter vision encoder and a Mixture-of-Experts (MoE) LLM of 20B active parameters. Despite its relatively compact architecture, it delivers strong performance across a wide spectrum of public VLM benchmarks and internal evaluation suites, achieving the state-of-the-art performance on 38 out of 60 public benchmarks. Moreover, in agent-centric tasks such as GUI control and gameplay, Seed1.5-VL outperforms leading multimodal systems, including OpenAI CUA and Claude 3.7. Beyond visual and video understanding, it also demonstrates strong reasoning abilities, making it particularly effective for multimodal reasoning challenges such as visual puzzles. We believe these capabilities will empower broader applications across diverse tasks. In this report, we mainly provide a comprehensive review of our experiences in building Seed1.5-VL across model design, data construction, and training at various stages, hoping that this report can inspire further research. Seed1.5-VL is now accessible at https://www.volcengine.com/ (Volcano Engine Model ID: doubao-1-5-thinking-vision-pro-250428)

SepALM: Audio Language Models Are Error Correctors for Robust Speech Separation

While contemporary speech separation technologies adeptly process lengthy mixed audio waveforms, they are frequently challenged by the intricacies of real-world environments, including noisy and reverberant settings, which can result in artifacts or distortions in the separated speech. To overcome these limitations, we introduce SepALM, a pioneering approach that employs audio language models (ALMs) to rectify and re-synthesize speech within the text domain following preliminary separation. SepALM comprises four core components: a separator, a corrector, a synthesizer, and an aligner. By integrating an ALM-based end-to-end error correction mechanism, we mitigate the risk of error accumulation and circumvent the optimization hurdles typically encountered in conventional methods that amalgamate automatic speech recognition (ASR) with large language models (LLMs). Additionally, we have developed Chain-of-Thought (CoT) prompting and knowledge distillation techniques to facilitate the reasoning and training processes of the ALM. Our experiments substantiate that SepALM not only elevates the precision of speech separation but also markedly bolsters adaptability in novel acoustic environments.

APE: Faster and Longer Context-Augmented Generation via Adaptive Parallel Encoding

Context-augmented generation (CAG) techniques, including RAG and ICL, require the efficient combination of multiple contexts to generate responses to user queries. Directly inputting these contexts as a sequence introduces a considerable computational burden by re-encoding the combined selection of contexts for every request. To address this, we explore the promising potential of parallel encoding to independently pre-compute and cache each context's KV states. This approach enables the direct loading of cached states during inference while accommodating more contexts through position reuse across contexts. However, due to misalignments in attention distribution, directly applying parallel encoding results in a significant performance drop. To enable effective and efficient CAG, we propose Adaptive Parallel Encoding ($\textbf{APE}$), which brings shared prefix, attention temperature, and scaling factor to align the distribution of parallel encoding with sequential encoding. Results on RAG and ICL tasks demonstrate that APE can preserve 98% and 93% sequential encoding performance using the same inputs while outperforming parallel encoding by 3.6% and 7.9%, respectively. It also scales to many-shot CAG, effectively encoding hundreds of contexts in parallel. Efficiency evaluation shows that APE can achieve an end-to-end 4.5$\times$ speedup by reducing 28$\times$ prefilling time for a 128K-length context.

DeepSeek-V3 Technical Report

We present DeepSeek-V3, a strong Mixture-of-Experts (MoE) language model with 671B total parameters with 37B activated for each token. To achieve efficient inference and cost-effective training, DeepSeek-V3 adopts Multi-head Latent Attention (MLA) and DeepSeekMoE architectures, which were thoroughly validated in DeepSeek-V2. Furthermore, DeepSeek-V3 pioneers an auxiliary-loss-free strategy for load balancing and sets a multi-token prediction training objective for stronger performance. We pre-train DeepSeek-V3 on 14.8 trillion diverse and high-quality tokens, followed by Supervised Fine-Tuning and Reinforcement Learning stages to fully harness its capabilities. Comprehensive evaluations reveal that DeepSeek-V3 outperforms other open-source models and achieves performance comparable to leading closed-source models. Despite its excellent performance, DeepSeek-V3 requires only 2.788M H800 GPU hours for its full training. In addition, its training process is remarkably stable. Throughout the entire training process, we did not experience any irrecoverable loss spikes or perform any rollbacks. The model checkpoints are available at https://github.com/deepseek-ai/DeepSeek-V3.

Graph Structure Learning for Spatial-Temporal Imputation: Adapting to Node and Feature Scales

Spatial-temporal data collected across different geographic locations often suffer from missing values, posing challenges to data analysis. Existing methods primarily leverage fixed spatial graphs to impute missing values, which implicitly assume that the spatial relationship is roughly the same for all features across different locations. However, they may overlook the different spatial relationships of diverse features recorded by sensors in different locations. To address this, we introduce the multi-scale Graph Structure Learning framework for spatial-temporal Imputation (GSLI) that dynamically adapts to the heterogeneous spatial correlations. Our framework encompasses node-scale graph structure learning to cater to the distinct global spatial correlations of different features, and feature-scale graph structure learning to unveil common spatial correlation across features within all stations. Integrated with prominence modeling, our framework emphasizes nodes and features with greater significance in the imputation process. Furthermore, GSLI incorporates cross-feature and cross-temporal representation learning to capture spatial-temporal dependencies. Evaluated on six real incomplete spatial-temporal datasets, GSLI showcases the improvement in data imputation.

S$^{2}$FT: Efficient, Scalable and Generalizable LLM Fine-tuning by Structured Sparsity

Current PEFT methods for LLMs can achieve either high quality, efficient training, or scalable serving, but not all three simultaneously. To address this limitation, we investigate sparse fine-tuning and observe a remarkable improvement in generalization ability. Utilizing this key insight, we propose a family of Structured Sparse Fine-Tuning (S$^{2}$FT) methods for LLMs, which concurrently achieve state-of-the-art fine-tuning performance, training efficiency, and inference scalability. S$^{2}$FT accomplishes this by "selecting sparsely and computing densely". It selects a few heads and channels in the MHA and FFN modules for each Transformer block, respectively. Next, it co-permutes weight matrices on both sides of the coupled structures in LLMs to connect the selected components in each layer into a dense submatrix. Finally, S$^{2}$FT performs in-place gradient updates on all submatrices. Through theoretical analysis and empirical results, our method prevents overfitting and forgetting, delivers SOTA performance on both commonsense and arithmetic reasoning with 4.6% and 1.3% average improvements compared to LoRA, and surpasses full FT by 11.5% when generalizing to various domains after instruction tuning. Using our partial backpropagation algorithm, S$^{2}$FT saves training memory up to 3$\times$ and improves latency by 1.5-2.7$\times$ compared to full FT, while delivering an average 10% improvement over LoRA on both metrics. We further demonstrate that the weight updates in S$^{2}$FT can be decoupled into adapters, enabling effective fusion, fast switch, and efficient parallelism for serving multiple fine-tuned models.

A privacy-preserving distributed credible evidence fusion algorithm for collective decision-making

The theory of evidence reasoning has been applied to collective decision-making in recent years. However, existing distributed evidence fusion methods lead to participants' preference leakage and fusion failures as they directly exchange raw evidence and do not assess evidence credibility like centralized credible evidence fusion (CCEF) does. To do so, a privacy-preserving distributed credible evidence fusion method with three-level consensus (PCEF) is proposed in this paper. In evidence difference measure (EDM) neighbor consensus, an evidence-free equivalent expression of EDM among neighbored agents is derived with the shared dot product protocol for pignistic probability and the identical judgment of two events with maximal subjective probabilities, so that evidence privacy is guaranteed due to such irreversible evidence transformation. In EDM network consensus, the non-neighbored EDMs are inferred and neighbored EDMs reach uniformity via interaction between linear average consensus (LAC) and low-rank matrix completion with rank adaptation to guarantee EDM consensus convergence and no solution of inferring raw evidence in numerical iteration style. In fusion network consensus, a privacy-preserving LAC with a self-cancelling differential privacy term is proposed, where each agent adds its randomness to the sharing content and step-by-step cancels such randomness in consensus iterations. Besides, the sufficient condition of the convergence to the CCEF is explored, and it is proven that raw evidence is impossibly inferred in such an iterative consensus. The simulations show that PCEF is close to CCEF both in credibility and fusion results and obtains higher decision accuracy with less time-comsuming than existing methods.

Y-Mol: A Multiscale Biomedical Knowledge-Guided Large Language Model for Drug Development

Large Language Models (LLMs) have recently demonstrated remarkable performance in general tasks across various fields. However, their effectiveness within specific domains such as drug development remains challenges. To solve these challenges, we introduce \textbf{Y-Mol}, forming a well-established LLM paradigm for the flow of drug development. Y-Mol is a multiscale biomedical knowledge-guided LLM designed to accomplish tasks across lead compound discovery, pre-clinic, and clinic prediction. By integrating millions of multiscale biomedical knowledge and using LLaMA2 as the base LLM, Y-Mol augments the reasoning capability in the biomedical domain by learning from a corpus of publications, knowledge graphs, and expert-designed synthetic data. The capability is further enriched with three types of drug-oriented instructions: description-based prompts from processed publications, semantic-based prompts for extracting associations from knowledge graphs, and template-based prompts for understanding expert knowledge from biomedical tools. Besides, Y-Mol offers a set of LLM paradigms that can autonomously execute the downstream tasks across the entire process of drug development, including virtual screening, drug design, pharmacological properties prediction, and drug-related interaction prediction. Our extensive evaluations of various biomedical sources demonstrate that Y-Mol significantly outperforms general-purpose LLMs in discovering lead compounds, predicting molecular properties, and identifying drug interaction events.