A Large-Language Model Framework for Relative Timeline Extraction from PubMed Case Reports

Timing of clinical events is central to characterization of patient trajectories, enabling analyses such as process tracing, forecasting, and causal reasoning. However, structured electronic health records capture few data elements critical to these tasks, while clinical reports lack temporal localization of events in structured form. We present a system that transforms case reports into textual time series-structured pairs of textual events and timestamps. We contrast manual and large language model (LLM) annotations (n=320 and n=390 respectively) of ten randomly-sampled PubMed open-access (PMOA) case reports (N=152,974) and assess inter-LLM agreement (n=3,103; N=93). We find that the LLM models have moderate event recall(O1-preview: 0.80) but high temporal concordance among identified events (O1-preview: 0.95). By establishing the task, annotation, and assessment systems, and by demonstrating high concordance, this work may serve as a benchmark for leveraging the PMOA corpus for temporal analytics.

Deep Learning Approaches for Medical Imaging Under Varying Degrees of Label Availability: A Comprehensive Survey

Deep learning has achieved significant breakthroughs in medical imaging, but these advancements are often dependent on large, well-annotated datasets. However, obtaining such datasets poses a significant challenge, as it requires time-consuming and labor-intensive annotations from medical experts. Consequently, there is growing interest in learning paradigms such as incomplete, inexact, and absent supervision, which are designed to operate under limited, inexact, or missing labels. This survey categorizes and reviews the evolving research in these areas, analyzing around 600 notable contributions since 2018. It covers tasks such as image classification, segmentation, and detection across various medical application areas, including but not limited to brain, chest, and cardiac imaging. We attempt to establish the relationships among existing research studies in related areas. We provide formal definitions of different learning paradigms and offer a comprehensive summary and interpretation of various learning mechanisms and strategies, aiding readers in better understanding the current research landscape and ideas. We also discuss potential future research challenges.

GenEDA: Unleashing Generative Reasoning on Netlist via Multimodal Encoder-Decoder Aligned Foundation Model

The success of foundation AI has motivated the research of circuit foundation models, which are customized to assist the integrated circuit (IC) design process. However, existing pre-trained circuit models are typically limited to standalone encoders for predictive tasks or decoders for generative tasks. These two model types are developed independently, operate on different circuit modalities, and reside in separate latent spaces, which restricts their ability to complement each other for more advanced applications. In this work, we present GenEDA, the first framework that aligns circuit encoders with decoders within a shared latent space. GenEDA bridges the gap between graph-based circuit representations and text-based large language models (LLMs), enabling communication between their respective latent spaces. To achieve the alignment, we propose two paradigms that support both open-source trainable LLMs and commercial frozen LLMs. Built on this aligned architecture, GenEDA enables three unprecedented generative reasoning tasks over netlists, where the model reversely generates the high-level functionality from low-level netlists in different granularities. These tasks extend traditional gate-type prediction to direct generation of full-circuit functionality. Experiments demonstrate that GenEDA significantly boosts advanced LLMs' (e.g., GPT-4o and DeepSeek-V3) performance in all tasks.

Flexible and Explainable Graph Analysis for EEG-based Alzheimer's Disease Classification

Alzheimer's Disease is a progressive neurological disorder that is one of the most common forms of dementia. It leads to a decline in memory, reasoning ability, and behavior, especially in older people. The cause of Alzheimer's Disease is still under exploration and there is no all-inclusive theory that can explain the pathologies in each individual patient. Nevertheless, early intervention has been found to be effective in managing symptoms and slowing down the disease's progression. Recent research has utilized electroencephalography (EEG) data to identify biomarkers that distinguish Alzheimer's Disease patients from healthy individuals. Prior studies have used various machine learning methods, including deep learning and graph neural networks, to examine electroencephalography-based signals for identifying Alzheimer's Disease patients. In our research, we proposed a Flexible and Explainable Gated Graph Convolutional Network (GGCN) with Multi-Objective Tree-Structured Parzen Estimator (MOTPE) hyperparameter tuning. This provides a flexible solution that efficiently identifies the optimal number of GGCN blocks to achieve the optimized precision, specificity, and recall outcomes, as well as the optimized area under the Receiver Operating Characteristic (AUC). Our findings demonstrated a high efficacy with an over 0.9 Receiver Operating Characteristic score, alongside precision, specificity, and recall scores in distinguishing health control with Alzheimer's Disease patients in Moderate to Severe Dementia using the power spectrum density (PSD) of electroencephalography signals across various frequency bands. Moreover, our research enhanced the interpretability of the embedded adjacency matrices, revealing connectivity differences in frontal and parietal brain regions between Alzheimer's patients and healthy individuals.

Hierarchical Attention Networks for Lossless Point Cloud Attribute Compression

In this paper, we propose a deep hierarchical attention context model for lossless attribute compression of point clouds, leveraging a multi-resolution spatial structure and residual learning. A simple and effective Level of Detail (LoD) structure is introduced to yield a coarse-to-fine representation. To enhance efficiency, points within the same refinement level are encoded in parallel, sharing a common context point group. By hierarchically aggregating information from neighboring points, our attention model learns contextual dependencies across varying scales and densities, enabling comprehensive feature extraction. We also adopt normalization for position coordinates and attributes to achieve scale-invariant compression. Additionally, we segment the point cloud into multiple slices to facilitate parallel processing, further optimizing time complexity. Experimental results demonstrate that the proposed method offers better coding performance than the latest G-PCC for color and reflectance attributes while maintaining more efficient encoding and decoding runtimes.

HSLiNets: Evaluating Band Ordering Strategies in Hyperspectral and LiDAR Fusion

The integration of hyperspectral imaging (HSI) and Light Detection and Ranging (LiDAR) data provides complementary spectral and spatial information for remote sensing applications. While previous studies have explored the role of band selection and grouping in HSI classification, little attention has been given to how the spectral sequence or band order affects classification outcomes when fused with LiDAR. In this work, we systematically investigate the influence of band order on HSI-LiDAR fusion performance. Through extensive experiments, we demonstrate that band order significantly impacts classification accuracy, revealing a previously overlooked factor in fusion-based models. Motivated by this observation, we propose a novel fusion architecture that not only integrates HSI and LiDAR data but also learns from multiple band order configurations. The proposed method enhances feature representation by adaptively fusing different spectral sequences, leading to improved classification accuracy. Experimental results on the Houston 2013 and Trento datasets show that our approach outperforms state-of-the-art fusion models. Data and code are available at https://github.com/Judyxyang/HSLiNets.

Weakly Supervised Spatial Implicit Neural Representation Learning for 3D MRI-Ultrasound Deformable Image Registration in HDR Prostate Brachytherapy

Purpose: Accurate 3D MRI-ultrasound (US) deformable registration is critical for real-time guidance in high-dose-rate (HDR) prostate brachytherapy. We present a weakly supervised spatial implicit neural representation (SINR) method to address modality differences and pelvic anatomy challenges. Methods: The framework uses sparse surface supervision from MRI/US segmentations instead of dense intensity matching. SINR models deformations as continuous spatial functions, with patient-specific surface priors guiding a stationary velocity field for biologically plausible deformations. Validation included 20 public Prostate-MRI-US-Biopsy cases and 10 institutional HDR cases, evaluated via Dice similarity coefficient (DSC), mean surface distance (MSD), and 95% Hausdorff distance (HD95). Results: The proposed method achieved robust registration. For the public dataset, prostate DSC was $0.93 \pm 0.05$, MSD $0.87 \pm 0.10$ mm, and HD95 $1.58 \pm 0.37$ mm. For the institutional dataset, prostate CTV achieved DSC $0.88 \pm 0.09$, MSD $1.21 \pm 0.38$ mm, and HD95 $2.09 \pm 1.48$ mm. Bladder and rectum performance was lower due to ultrasound's limited field of view. Visual assessments confirmed accurate alignment with minimal discrepancies. Conclusion: This study introduces a novel weakly supervised SINR-based approach for 3D MRI-US deformable registration. By leveraging sparse surface supervision and spatial priors, it achieves accurate, robust, and computationally efficient registration, enhancing real-time image guidance in HDR prostate brachytherapy and improving treatment precision.

GR00T N1: An Open Foundation Model for Generalist Humanoid Robots

General-purpose robots need a versatile body and an intelligent mind. Recent advancements in humanoid robots have shown great promise as a hardware platform for building generalist autonomy in the human world. A robot foundation model, trained on massive and diverse data sources, is essential for enabling the robots to reason about novel situations, robustly handle real-world variability, and rapidly learn new tasks. To this end, we introduce GR00T N1, an open foundation model for humanoid robots. GR00T N1 is a Vision-Language-Action (VLA) model with a dual-system architecture. The vision-language module (System 2) interprets the environment through vision and language instructions. The subsequent diffusion transformer module (System 1) generates fluid motor actions in real time. Both modules are tightly coupled and jointly trained end-to-end. We train GR00T N1 with a heterogeneous mixture of real-robot trajectories, human videos, and synthetically generated datasets. We show that our generalist robot model GR00T N1 outperforms the state-of-the-art imitation learning baselines on standard simulation benchmarks across multiple robot embodiments. Furthermore, we deploy our model on the Fourier GR-1 humanoid robot for language-conditioned bimanual manipulation tasks, achieving strong performance with high data efficiency.

WISA: World Simulator Assistant for Physics-Aware Text-to-Video Generation

Recent rapid advancements in text-to-video (T2V) generation, such as SoRA and Kling, have shown great potential for building world simulators. However, current T2V models struggle to grasp abstract physical principles and generate videos that adhere to physical laws. This challenge arises primarily from a lack of clear guidance on physical information due to a significant gap between abstract physical principles and generation models. To this end, we introduce the World Simulator Assistant (WISA), an effective framework for decomposing and incorporating physical principles into T2V models. Specifically, WISA decomposes physical principles into textual physical descriptions, qualitative physical categories, and quantitative physical properties. To effectively embed these physical attributes into the generation process, WISA incorporates several key designs, including Mixture-of-Physical-Experts Attention (MoPA) and a Physical Classifier, enhancing the model's physics awareness. Furthermore, most existing datasets feature videos where physical phenomena are either weakly represented or entangled with multiple co-occurring processes, limiting their suitability as dedicated resources for learning explicit physical principles. We propose a novel video dataset, WISA-32K, collected based on qualitative physical categories. It consists of 32,000 videos, representing 17 physical laws across three domains of physics: dynamics, thermodynamics, and optics. Experimental results demonstrate that WISA can effectively enhance the compatibility of T2V models with real-world physical laws, achieving a considerable improvement on the VideoPhy benchmark. The visual exhibitions of WISA and WISA-32K are available in the https://360cvgroup.github.io/WISA/.

U-StyDiT: Ultra-high Quality Artistic Style Transfer Using Diffusion Transformers

Ultra-high quality artistic style transfer refers to repainting an ultra-high quality content image using the style information learned from the style image. Existing artistic style transfer methods can be categorized into style reconstruction-based and content-style disentanglement-based style transfer approaches. Although these methods can generate some artistic stylized images, they still exhibit obvious artifacts and disharmonious patterns, which hinder their ability to produce ultra-high quality artistic stylized images. To address these issues, we propose a novel artistic image style transfer method, U-StyDiT, which is built on transformer-based diffusion (DiT) and learns content-style disentanglement, generating ultra-high quality artistic stylized images. Specifically, we first design a Multi-view Style Modulator (MSM) to learn style information from a style image from local and global perspectives, conditioning U-StyDiT to generate stylized images with the learned style information. Then, we introduce a StyDiT Block to learn content and style conditions simultaneously from a style image. Additionally, we propose an ultra-high quality artistic image dataset, Aes4M, comprising 10 categories, each containing 400,000 style images. This dataset effectively solves the problem that the existing style transfer methods cannot produce high-quality artistic stylized images due to the size of the dataset and the quality of the images in the dataset. Finally, the extensive qualitative and quantitative experiments validate that our U-StyDiT can create higher quality stylized images compared to state-of-the-art artistic style transfer methods. To our knowledge, our proposed method is the first to address the generation of ultra-high quality stylized images using transformer-based diffusion.