An application of Pixel Interval Down-sampling (PID) for dense tiny microorganism counting on environmental microorganism images

This paper proposes a novel pixel interval down-sampling network (PID-Net) for dense tiny objects (yeast cells) counting tasks with higher accuracy. The PID-Net is an end-to-end CNN model with encoder to decoder architecture. The pixel interval down-sampling operations are concatenated with max-pooling operations to combine the sparse and dense features. It addresses the limitation of contour conglutination of dense objects while counting. Evaluation was done using classical segmentation metrics (Dice, Jaccard, Hausdorff distance) as well as counting metrics. Experimental result shows that the proposed PID-Net has the best performance and potential for dense tiny objects counting tasks, which achieves 96.97% counting accuracy on the dataset with 2448 yeast cell images. By comparing with the state-of-the-art approaches like Attention U-Net, Swin U-Net and Trans U-Net, the proposed PID-Net can segment the dense tiny objects with clearer boundaries and fewer incorrect debris, which shows the great potential of PID-Net in the task of accurate counting tasks.

Revisiting Domain Generalized Stereo Matching Networks from a Feature Consistency Perspective

Despite recent stereo matching networks achieving impressive performance given sufficient training data, they suffer from domain shifts and generalize poorly to unseen domains. We argue that maintaining feature consistency between matching pixels is a vital factor for promoting the generalization capability of stereo matching networks, which has not been adequately considered. Here we address this issue by proposing a simple pixel-wise contrastive learning across the viewpoints. The stereo contrastive feature loss function explicitly constrains the consistency between learned features of matching pixel pairs which are observations of the same 3D points. A stereo selective whitening loss is further introduced to better preserve the stereo feature consistency across domains, which decorrelates stereo features from stereo viewpoint-specific style information. Counter-intuitively, the generalization of feature consistency between two viewpoints in the same scene translates to the generalization of stereo matching performance to unseen domains. Our method is generic in nature as it can be easily embedded into existing stereo networks and does not require access to the samples in the target domain. When trained on synthetic data and generalized to four real-world testing sets, our method achieves superior performance over several state-of-the-art networks.

A Comprehensive Survey with Quantitative Comparison of Image Analysis Methods for Microorganism Biovolume Measurements

With the acceleration of urbanization and living standards, microorganisms play increasingly important roles in industrial production, bio-technique, and food safety testing. Microorganism biovolume measurements are one of the essential parts of microbial analysis. However, traditional manual measurement methods are time-consuming and challenging to measure the characteristics precisely. With the development of digital image processing techniques, the characteristics of the microbial population can be detected and quantified. The changing trend can be adjusted in time and provided a basis for the improvement. The applications of the microorganism biovolume measurement method have developed since the 1980s. More than 60 articles are reviewed in this study, and the articles are grouped by digital image segmentation methods with periods. This study has high research significance and application value, which can be referred to microbial researchers to have a comprehensive understanding of microorganism biovolume measurements using digital image analysis methods and potential applications.

RestoreFormer: High-Quality Blind Face Restoration From Undegraded Key-Value Pairs

Blind face restoration is to recover a high-quality face image from unknown degradations. As face image contains abundant contextual information, we propose a method, RestoreFormer, which explores fully-spatial attentions to model contextual information and surpasses existing works that use local operators. RestoreFormer has several benefits compared to prior arts. First, unlike the conventional multi-head self-attention in previous Vision Transformers (ViTs), RestoreFormer incorporates a multi-head cross-attention layer to learn fully-spatial interactions between corrupted queries and high-quality key-value pairs. Second, the key-value pairs in ResotreFormer are sampled from a reconstruction-oriented high-quality dictionary, whose elements are rich in high-quality facial features specifically aimed for face reconstruction, leading to superior restoration results. Third, RestoreFormer outperforms advanced state-of-the-art methods on one synthetic dataset and three real-world datasets, as well as produces images with better visual quality.

Measuring and Sampling: A Metric-guided Subgraph Learning Framework for Graph Neural Network

Graph neural network (GNN) has shown convincing performance in learning powerful node representations that preserve both node attributes and graph structural information. However, many GNNs encounter problems in effectiveness and efficiency when they are designed with a deeper network structure or handle large-sized graphs. Several sampling algorithms have been proposed for improving and accelerating the training of GNNs, yet they ignore understanding the source of GNN performance gain. The measurement of information within graph data can help the sampling algorithms to keep high-value information while removing redundant information and even noise. In this paper, we propose a Metric-Guided (MeGuide) subgraph learning framework for GNNs. MeGuide employs two novel metrics: Feature Smoothness and Connection Failure Distance to guide the subgraph sampling and mini-batch based training. Feature Smoothness is designed for analyzing the feature of nodes in order to retain the most valuable information, while Connection Failure Distance can measure the structural information to control the size of subgraphs. We demonstrate the effectiveness and efficiency of MeGuide in training various GNNs on multiple datasets.

Translational Concept Embedding for Generalized Compositional Zero-shot Learning

Generalized compositional zero-shot learning means to learn composed concepts of attribute-object pairs in a zero-shot fashion, where a model is trained on a set of seen concepts and tested on a combined set of seen and unseen concepts. This task is very challenging because of not only the gap between seen and unseen concepts but also the contextual dependency between attributes and objects. This paper introduces a new approach, termed translational concept embedding, to solve these two difficulties in a unified framework. It models the effect of applying an attribute to an object as adding a translational attribute feature to an object prototype. We explicitly take into account of the contextual dependency between attributes and objects by generating translational attribute features conditionally dependent on the object prototypes. Furthermore, we design a ratio variance constraint loss to promote the model's generalization ability on unseen concepts. It regularizes the distances between concepts by utilizing knowledge from their pretrained word embeddings. We evaluate the performance of our model under both the unbiased and biased concept classification tasks, and show that our model is able to achieve good balance in predicting unseen and seen concepts.

A Self-supervised Mixed-curvature Graph Neural Network

Graph representation learning received increasing attentions in recent years. Most of existing methods ignore the complexity of the graph structures and restrict graphs in a single constant-curvature representation space, which is only suitable to particular kinds of graph structure indeed. Additionally, these methods follow the supervised or semi-supervised learning paradigm, and thereby notably limit their deployment on the unlabeled graphs in real applications. To address these aforementioned limitations, we take the first attempt to study the self-supervised graph representation learning in the mixed-curvature spaces. In this paper, we present a novel Self-supervised Mixed-curvature Graph Neural Network (SelfMGNN). Instead of working on one single constant-curvature space, we construct a mixed-curvature space via the Cartesian product of multiple Riemannian component spaces and design hierarchical attention mechanisms for learning and fusing the representations across these component spaces. To enable the self-supervisd learning, we propose a novel dual contrastive approach. The mixed-curvature Riemannian space actually provides multiple Riemannian views for the contrastive learning. We introduce a Riemannian projector to reveal these views, and utilize a well-designed Riemannian discriminator for the single-view and cross-view contrastive learning within and across the Riemannian views. Finally, extensive experiments show that SelfMGNN captures the complicated graph structures in reality and outperforms state-of-the-art baselines.

Optimal No-Regret Learning in Strongly Monotone Games with Bandit Feedback

We consider online no-regret learning in unknown games with bandit feedback, where each agent only observes its reward at each time -- determined by all players' current joint action -- rather than its gradient. We focus on the class of smooth and strongly monotone games and study optimal no-regret learning therein. Leveraging self-concordant barrier functions, we first construct an online bandit convex optimization algorithm and show that it achieves the single-agent optimal regret of $\tilde{\Theta}(\sqrt{T})$ under smooth and strongly-concave payoff functions. We then show that if each agent applies this no-regret learning algorithm in strongly monotone games, the joint action converges in \textit{last iterate} to the unique Nash equilibrium at a rate of $\tilde{\Theta}(1/\sqrt{T})$. Prior to our work, the best-know convergence rate in the same class of games is $O(1/T^{1/3})$ (achieved by a different algorithm), thus leaving open the problem of optimal no-regret learning algorithms (since the known lower bound is $\Omega(1/\sqrt{T})$). Our results thus settle this open problem and contribute to the broad landscape of bandit game-theoretical learning by identifying the first doubly optimal bandit learning algorithm, in that it achieves (up to log factors) both optimal regret in the single-agent learning and optimal last-iterate convergence rate in the multi-agent learning. We also present results on several simulation studies -- Cournot competition, Kelly auctions, and distributed regularized logistic regression -- to demonstrate the efficacy of our algorithm.

Collaborative Graph Contrastive Learning: Data Augmentation Composition May Not be Necessary for Graph Representation Learning

Unsupervised graph representation learning is a non-trivial topic for graph data. The success of contrastive learning and self-supervised learning in the unsupervised representation learning of structured data inspires similar attempts on the graph. The current unsupervised graph representation learning and pre-training using the contrastive loss are mainly based on the contrast between handcrafted augmented graph data. However, the graph data augmentation is still not well-explored due to the unpredictable invariance. In this paper, we propose a novel collaborative graph neural networks contrastive learning framework (CGCL), which uses multiple graph encoders to observe the graph. Features observed from different views act as the graph augmentation for contrastive learning between graph encoders, avoiding any perturbation to guarantee the invariance. CGCL is capable of handling both graph-level and node-level representation learning. Extensive experiments demonstrate the advantages of CGCL in unsupervised graph representation learning and the non-necessity of handcrafted data augmentation composition for graph representation learning.

EMDS-7: Environmental Microorganism Image Dataset Seventh Version for Multiple Object Detection Evaluation

The Environmental Microorganism Image Dataset Seventh Version (EMDS-7) is a microscopic image data set, including the original Environmental Microorganism images (EMs) and the corresponding object labeling files in ".XML" format file. The EMDS-7 data set consists of 41 types of EMs, which has a total of 2365 images and 13216 labeled objects. The EMDS-7 database mainly focuses on the object detection. In order to prove the effectiveness of EMDS-7, we select the most commonly used deep learning methods (Faster-RCNN, YOLOv3, YOLOv4, SSD and RetinaNet) and evaluation indices for testing and evaluation. EMDS-7 is freely published for non-commercial purpose at: https://figshare.com/articles/dataset/EMDS-7_DataSet/16869571