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Jianxu Chen

Understanding metric-related pitfalls in image analysis validation

Feb 09, 2023
Annika Reinke, Minu D. Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Carole H. Sudre, Laura Acion, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Matthew Blaschko, Florian Büttner, M. Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Robert Haase, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Jens Kleesiek, Florian Kofler, Thijs Kooi, Annette Kopp-Schneider, Michal Kozubek, Anna Kreshuk, Tahsin Kurc, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern Menze, Karel G. M. Moons, Henning Müller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M. Rafelski, Nasir Rajpoot, Mauricio Reyes, Michael A. Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I. Sánchez, Shravya Shetty, Maarten van Smeden, Ronald M. Summers, Abdel A. Taha, Aleksei Tiulpin, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Manuel Wiesenfarth, Ziv R. Yaniv, Paul F. Jäger, Lena Maier-Hein

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MMV_Im2Im: An Open Source Microscopy Machine Vision Toolbox for Image-to-Image Transformation

Sep 06, 2022
Justin Sonneck, Jianxu Chen

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* 23 pages, 10 figures

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H-EMD: A Hierarchical Earth Mover's Distance Method for Instance Segmentation

Jun 02, 2022
Peixian Liang, Yizhe Zhang, Yifan Ding, Jianxu Chen, Chinedu S. Madukoma, Tim Weninger, Joshua D. Shrout, Danny Z. Chen

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* Accepted at IEEE Transactions On Medical Imaging (TMI)

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Unlabeled Data Guided Semi-supervised Histopathology Image Segmentation

Dec 17, 2020
Hongxiao Wang, Hao Zheng, Jianxu Chen, Lin Yang, Yizhe Zhang, Danny Z. Chen

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* Accepted paper for the 2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

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Cascade Decoder: A Universal Decoding Method for Biomedical Image Segmentation

Jan 15, 2019
Peixian Liang, Jianxu Chen, Hao Zheng, Lin Yang, Yizhe Zhang, Danny Z. Chen

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* Accepted at ISBI 2019

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A New Registration Approach for Dynamic Analysis of Calcium Signals in Organs

Feb 01, 2018
Peixian Liang, Jianxu Chen, Pavel A. Brodskiy, Qinfeng Wu, Yejia Zhang, Yizhe Zhang, Lin Yang, Jeremiah J. Zartman, Danny Z. Chen

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* Accepted at ISBI 2018

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Suggestive Annotation: A Deep Active Learning Framework for Biomedical Image Segmentation

Jun 15, 2017
Lin Yang, Yizhe Zhang, Jianxu Chen, Siyuan Zhang, Danny Z. Chen

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* Accepted at MICCAI 2017

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