Knowledge-driven Encode, Retrieve, Paraphrase for Medical Image Report Generation

Generating long and semantic-coherent reports to describe medical images poses great challenges towards bridging visual and linguistic modalities, incorporating medical domain knowledge, and generating realistic and accurate descriptions. We propose a novel Knowledge-driven Encode, Retrieve, Paraphrase (KERP) approach which reconciles traditional knowledge- and retrieval-based methods with modern learning-based methods for accurate and robust medical report generation. Specifically, KERP decomposes medical report generation into explicit medical abnormality graph learning and subsequent natural language modeling. KERP first employs an Encode module that transforms visual features into a structured abnormality graph by incorporating prior medical knowledge; then a Retrieve module that retrieves text templates based on the detected abnormalities; and lastly, a Paraphrase module that rewrites the templates according to specific cases. The core of KERP is a proposed generic implementation unit---Graph Transformer (GTR) that dynamically transforms high-level semantics between graph-structured data of multiple domains such as knowledge graphs, images and sequences. Experiments show that the proposed approach generates structured and robust reports supported with accurate abnormality description and explainable attentive regions, achieving the state-of-the-art results on two medical report benchmarks, with the best medical abnormality and disease classification accuracy and improved human evaluation performance.

Tuning Hyperparameters without Grad Students: Scalable and Robust Bayesian Optimisation with Dragonfly

Bayesian Optimisation (BO), refers to a suite of techniques for global optimisation of expensive black box functions, which use introspective Bayesian models of the function to efficiently find the optimum. While BO has been applied successfully in many applications, modern optimisation tasks usher in new challenges where conventional methods fail spectacularly. In this work, we present Dragonfly, an open source Python library for scalable and robust BO. Dragonfly incorporates multiple recently developed methods that allow BO to be applied in challenging real world settings; these include better methods for handling higher dimensional domains, methods for handling multi-fidelity evaluations when cheap approximations of an expensive function are available, methods for optimising over structured combinatorial spaces, such as the space of neural network architectures, and methods for handling parallel evaluations. Additionally, we develop new methodological improvements in BO for selecting the Bayesian model, selecting the acquisition function, and optimising over complex domains with different variable types and additional constraints. We compare Dragonfly to a suite of other packages and algorithms for global optimisation and demonstrate that when the above methods are integrated, they enable significant improvements in the performance of BO. The Dragonfly library is available at dragonfly.github.io.

Learning Robust Representations by Projecting Superficial Statistics Out

Despite impressive performance as evaluated on i.i.d. holdout data, deep neural networks depend heavily on superficial statistics of the training data and are liable to break under distribution shift. For example, subtle changes to the background or texture of an image can break a seemingly powerful classifier. Building on previous work on domain generalization, we hope to produce a classifier that will generalize to previously unseen domains, even when domain identifiers are not available during training. This setting is challenging because the model may extract many distribution-specific (superficial) signals together with distribution-agnostic (semantic) signals. To overcome this challenge, we incorporate the gray-level co-occurrence matrix (GLCM) to extract patterns that our prior knowledge suggests are superficial: they are sensitive to the texture but unable to capture the gestalt of an image. Then we introduce two techniques for improving our networks' out-of-sample performance. The first method is built on the reverse gradient method that pushes our model to learn representations from which the GLCM representation is not predictable. The second method is built on the independence introduced by projecting the model's representation onto the subspace orthogonal to GLCM representation's. We test our method on the battery of standard domain generalization data sets and, interestingly, achieve comparable or better performance as compared to other domain generalization methods that explicitly require samples from the target distribution for training.

Theoretically Principled Trade-off between Robustness and Accuracy

We identify a trade-off between robustness and accuracy that serves as a guiding principle in the design of defenses against adversarial examples. Although the problem has been widely studied empirically, much remains unknown concerning the theory underlying this trade-off. In this work, we quantify the trade-off in terms of the gap between the risk for adversarial examples and the risk for non-adversarial examples. The challenge is to provide tight bounds on this quantity in terms of a surrogate loss. We give an optimal upper bound on this quantity in terms of classification-calibrated loss, which matches the lower bound in the worst case. Inspired by our theoretical analysis, we also design a new defense method, TRADES, to trade adversarial robustness off against accuracy. Our proposed algorithm performs well experimentally in real-world datasets. The methodology is the foundation of our entry to the NeurIPS 2018 Adversarial Vision Challenge in which we won the 1st place out of 1,995 submissions in the robust model track, surpassing the runner-up approach by $11.41\%$ in terms of mean $\ell_2$ perturbation distance.

Stackelberg GAN: Towards Provable Minimax Equilibrium via Multi-Generator Architectures

We study the problem of alleviating the instability issue in the GAN training procedure via new architecture design. The discrepancy between the minimax and maximin objective values could serve as a proxy for the difficulties that the alternating gradient descent encounters in the optimization of GANs. In this work, we give new results on the benefits of multi-generator architecture of GANs. We show that the minimax gap shrinks to $\epsilon$ as the number of generators increases with rate $\widetilde{O}(1/\epsilon)$. This improves over the best-known result of $\widetilde{O}(1/\epsilon^2)$. At the core of our techniques is a novel application of Shapley-Folkman lemma to the generic minimax problem, where in the literature the technique was only known to work when the objective function is restricted to the Lagrangian function of a constraint optimization problem. Our proposed Stackelberg GAN performs well experimentally in both synthetic and real-world datasets, improving Fr\'echet Inception Distance by $14.61\%$ over the previous multi-generator GANs on the benchmark datasets.

Discourse in Multimedia: A Case Study in Information Extraction

To ensure readability, text is often written and presented with due formatting. These text formatting devices help the writer to effectively convey the narrative. At the same time, these help the readers pick up the structure of the discourse and comprehend the conveyed information. There have been a number of linguistic theories on discourse structure of text. However, these theories only consider unformatted text. Multimedia text contains rich formatting features which can be leveraged for various NLP tasks. In this paper, we study some of these discourse features in multimedia text and what communicative function they fulfil in the context. We examine how these multimedia discourse features can be used to improve an information extraction system. We show that the discourse and text layout features provide information that is complementary to lexical semantic information commonly used for information extraction. As a case study, we use these features to harvest structured subject knowledge of geometry from textbooks. We show that the harvested structured knowledge can be used to improve an existing solver for geometry problems, making it more accurate as well as more explainable.

DAGs with NO TEARS: Continuous Optimization for Structure Learning

Estimating the structure of directed acyclic graphs (DAGs, also known as Bayesian networks) is a challenging problem since the search space of DAGs is combinatorial and scales superexponentially with the number of nodes. Existing approaches rely on various local heuristics for enforcing the acyclicity constraint. In this paper, we introduce a fundamentally different strategy: We formulate the structure learning problem as a purely \emph{continuous} optimization problem over real matrices that avoids this combinatorial constraint entirely. This is achieved by a novel characterization of acyclicity that is not only smooth but also exact. The resulting problem can be efficiently solved by standard numerical algorithms, which also makes implementation effortless. The proposed method outperforms existing ones, without imposing any structural assumptions on the graph such as bounded treewidth or in-degree. Code implementing the proposed algorithm is open-source and publicly available at https://github.com/xunzheng/notears.

Transformation Autoregressive Networks

The fundamental task of general density estimation $p(x)$ has been of keen interest to machine learning. In this work, we attempt to systematically characterize methods for density estimation. Broadly speaking, most of the existing methods can be categorized into either using: \textit{a}) autoregressive models to estimate the conditional factors of the chain rule, $p(x_{i}\, |\, x_{i-1}, \ldots)$; or \textit{b}) non-linear transformations of variables of a simple base distribution. Based on the study of the characteristics of these categories, we propose multiple novel methods for each category. For example we proposed RNN based transformations to model non-Markovian dependencies. Further, through a comprehensive study over both real world and synthetic data, we show for that jointly leveraging transformations of variables and autoregressive conditional models, results in a considerable improvement in performance. We illustrate the use of our models in outlier detection and image modeling. Finally we introduce a novel data driven framework for learning a family of distributions.

Fault Tolerance in Iterative-Convergent Machine Learning

Machine learning (ML) training algorithms often possess an inherent self-correcting behavior due to their iterative-convergent nature. Recent systems exploit this property to achieve adaptability and efficiency in unreliable computing environments by relaxing the consistency of execution and allowing calculation errors to be self-corrected during training. However, the behavior of such systems are only well understood for specific types of calculation errors, such as those caused by staleness, reduced precision, or asynchronicity, and for specific types of training algorithms, such as stochastic gradient descent. In this paper, we develop a general framework to quantify the effects of calculation errors on iterative-convergent algorithms and use this framework to design new strategies for checkpoint-based fault tolerance. Our framework yields a worst-case upper bound on the iteration cost of arbitrary perturbations to model parameters during training. Our system, SCAR, employs strategies which reduce the iteration cost upper bound due to perturbations incurred when recovering from checkpoints. We show that SCAR can reduce the iteration cost of partial failures by 78% - 95% when compared with traditional checkpoint-based fault tolerance across a variety of ML models and training algorithms.

Toward Understanding the Impact of Staleness in Distributed Machine Learning

Many distributed machine learning (ML) systems adopt the non-synchronous execution in order to alleviate the network communication bottleneck, resulting in stale parameters that do not reflect the latest updates. Despite much development in large-scale ML, the effects of staleness on learning are inconclusive as it is challenging to directly monitor or control staleness in complex distributed environments. In this work, we study the convergence behaviors of a wide array of ML models and algorithms under delayed updates. Our extensive experiments reveal the rich diversity of the effects of staleness on the convergence of ML algorithms and offer insights into seemingly contradictory reports in the literature. The empirical findings also inspire a new convergence analysis of stochastic gradient descent in non-convex optimization under staleness, matching the best-known convergence rate of O(1/\sqrt{T}).