Unlocking Science: Novel Dataset and Benchmark for Cross-Modality Scientific Information Extraction

Extracting key information from scientific papers has the potential to help researchers work more efficiently and accelerate the pace of scientific progress. Over the last few years, research on Scientific Information Extraction (SciIE) witnessed the release of several new systems and benchmarks. However, existing paper-focused datasets mostly focus only on specific parts of a manuscript (e.g., abstracts) and are single-modality (i.e., text- or table-only), due to complex processing and expensive annotations. Moreover, core information can be present in either text or tables or across both. To close this gap in data availability and enable cross-modality IE, while alleviating labeling costs, we propose a semi-supervised pipeline for annotating entities in text, as well as entities and relations in tables, in an iterative procedure. Based on this pipeline, we release novel resources for the scientific community, including a high-quality benchmark, a large-scale corpus, and a semi-supervised annotation pipeline. We further report the performance of state-of-the-art IE models on the proposed benchmark dataset, as a baseline. Lastly, we explore the potential capability of large language models such as ChatGPT for the current task. Our new dataset, results, and analysis validate the effectiveness and efficiency of our semi-supervised pipeline, and we discuss its remaining limitations.

Flexible Variational Information Bottleneck: Achieving Diverse Compression with a Single Training

Information Bottleneck (IB) is a widely used framework that enables the extraction of information related to a target random variable from a source random variable. In the objective function, IB controls the trade-off between data compression and predictiveness through the Lagrange multiplier $\beta$. Traditionally, to find the trade-off to be learned, IB requires a search for $\beta$ through multiple training cycles, which is computationally expensive. In this study, we introduce Flexible Variational Information Bottleneck (FVIB), an innovative framework for classification task that can obtain optimal models for all values of $\beta$ with single, computationally efficient training. We theoretically demonstrate that across all values of reasonable $\beta$, FVIB can simultaneously maximize an approximation of the objective function for Variational Information Bottleneck (VIB), the conventional IB method. Then we empirically show that FVIB can learn the VIB objective as effectively as VIB. Furthermore, in terms of calibration performance, FVIB outperforms other IB and calibration methods by enabling continuous optimization of $\beta$. Our codes are available at https://github.com/sotakudo/fvib.

Guideline Learning for In-context Information Extraction

Large language models (LLMs) can perform a new task by merely conditioning on task instructions and a few input-output examples, without optimizing any parameters. This is called In-Context Learning (ICL). In-context Information Extraction (IE) has recently garnered attention in the research community. However, the performance of In-context IE generally lags behind the state-of-the-art supervised expert models. We highlight a key reason for this shortfall: underspecified task description. The limited-length context struggles to thoroughly express the intricate IE task instructions and various edge cases, leading to misalignment in task comprehension with humans. In this paper, we propose a Guideline Learning (GL) framework for In-context IE which reflectively learns and follows guidelines. During the learning phrase, GL automatically synthesizes a set of guidelines based on a few error cases, and during inference, GL retrieves helpful guidelines for better ICL. Moreover, we propose a self-consistency-based active learning method to enhance the efficiency of GL. Experiments on event extraction and relation extraction show that GL can significantly improve the performance of in-context IE.

Multi-Scale Semantic Segmentation with Modified MBConv Blocks

Recently, MBConv blocks, initially designed for efficiency in resource-limited settings and later adapted for cutting-edge image classification performances, have demonstrated significant potential in image classification tasks. Despite their success, their application in semantic segmentation has remained relatively unexplored. This paper introduces a novel adaptation of MBConv blocks specifically tailored for semantic segmentation. Our modification stems from the insight that semantic segmentation requires the extraction of more detailed spatial information than image classification. We argue that to effectively perform multi-scale semantic segmentation, each branch of a U-Net architecture, regardless of its resolution, should possess equivalent segmentation capabilities. By implementing these changes, our approach achieves impressive mean Intersection over Union (IoU) scores of 84.5% and 84.0% on the Cityscapes test and validation datasets, respectively, demonstrating the efficacy of our proposed modifications in enhancing semantic segmentation performance.

S3M: Semantic Segmentation Sparse Mapping for UAVs with RGB-D Camera

Unmanned Aerial Vehicles (UAVs) hold immense potential for critical applications, such as search and rescue operations, where accurate perception of indoor environments is paramount. However, the concurrent amalgamation of localization, 3D reconstruction, and semantic segmentation presents a notable hurdle, especially in the context of UAVs equipped with constrained power and computational resources. This paper presents a novel approach to address challenges in semantic information extraction and utilization within UAV operations. Our system integrates state-of-the-art visual SLAM to estimate a comprehensive 6-DoF pose and advanced object segmentation methods at the back end. To improve the computational and storage efficiency of the framework, we adopt a streamlined voxel-based 3D map representation - OctoMap to build a working system. Furthermore, the fusion algorithm is incorporated to obtain the semantic information of each frame from the front-end SLAM task, and the corresponding point. By leveraging semantic information, our framework enhances the UAV's ability to perceive and navigate through indoor spaces, addressing challenges in pose estimation accuracy and uncertainty reduction. Through Gazebo simulations, we validate the efficacy of our proposed system and successfully embed our approach into a Jetson Xavier AGX unit for real-world applications.

EMBRE: Entity-aware Masking for Biomedical Relation Extraction

Information extraction techniques, including named entity recognition (NER) and relation extraction (RE), are crucial in many domains to support making sense of vast amounts of unstructured text data by identifying and connecting relevant information. Such techniques can assist researchers in extracting valuable insights. In this paper, we introduce the Entity-aware Masking for Biomedical Relation Extraction (EMBRE) method for biomedical relation extraction, as applied in the context of the BioRED challenge Task 1, in which human-annotated entities are provided as input. Specifically, we integrate entity knowledge into a deep neural network by pretraining the backbone model with an entity masking objective. We randomly mask named entities for each instance and let the model identify the masked entity along with its type. In this way, the model is capable of learning more specific knowledge and more robust representations. Then, we utilize the pre-trained model as our backbone to encode language representations and feed these representations into two multilayer perceptron (MLPs) to predict the logits for relation and novelty, respectively. The experimental results demonstrate that our proposed method can improve the performances of entity pair, relation and novelty extraction over our baseline.

GenKIE: Robust Generative Multimodal Document Key Information Extraction

Key information extraction (KIE) from scanned documents has gained increasing attention because of its applications in various domains. Although promising results have been achieved by some recent KIE approaches, they are usually built based on discriminative models, which lack the ability to handle optical character recognition (OCR) errors and require laborious token-level labelling. In this paper, we propose a novel generative end-to-end model, named GenKIE, to address the KIE task. GenKIE is a sequence-to-sequence multimodal generative model that utilizes multimodal encoders to embed visual, layout and textual features and a decoder to generate the desired output. Well-designed prompts are leveraged to incorporate the label semantics as the weakly supervised signals and entice the generation of the key information. One notable advantage of the generative model is that it enables automatic correction of OCR errors. Besides, token-level granular annotation is not required. Extensive experiments on multiple public real-world datasets show that GenKIE effectively generalizes over different types of documents and achieves state-of-the-art results. Our experiments also validate the model's robustness against OCR errors, making GenKIE highly applicable in real-world scenarios.

Name Tagging Under Domain Shift via Metric Learning for Life Sciences

Name tagging is a key component of Information Extraction (IE), particularly in scientific domains such as biomedicine and chemistry, where large language models (LLMs), e.g., ChatGPT, fall short. We investigate the applicability of transfer learning for enhancing a name tagging model trained in the biomedical domain (the source domain) to be used in the chemical domain (the target domain). A common practice for training such a model in a few-shot learning setting is to pretrain the model on the labeled source data, and then, to finetune it on a hand-full of labeled target examples. In our experiments we observed that such a model is prone to mis-labeling the source entities, which can often appear in the text, as the target entities. To alleviate this problem, we propose a model to transfer the knowledge from the source domain to the target domain, however, at the same time, to project the source entities and target entities into separate regions of the feature space. This diminishes the risk of mis-labeling the source entities as the target entities. Our model consists of two stages: 1) entity grouping in the source domain, which incorporates knowledge from annotated events to establish relations between entities, and 2) entity discrimination in the target domain, which relies on pseudo labeling and contrastive learning to enhance discrimination between the entities in the two domains. We carry out our extensive experiments across three source and three target datasets, and demonstrate that our method outperforms the baselines, in some scenarios by 5\% absolute value.

Dual-Path Coupled Image Deraining Network via Spatial-Frequency Interaction

Transformers have recently emerged as a significant force in the field of image deraining. Existing image deraining methods utilize extensive research on self-attention. Though showcasing impressive results, they tend to neglect critical frequency information, as self-attention is generally less adept at capturing high-frequency details. To overcome this shortcoming, we have developed an innovative Dual-Path Coupled Deraining Network (DPCNet) that integrates information from both spatial and frequency domains through Spatial Feature Extraction Block (SFEBlock) and Frequency Feature Extraction Block (FFEBlock). We have further introduced an effective Adaptive Fusion Module (AFM) for the dual-path feature aggregation. Extensive experiments on six public deraining benchmarks and downstream vision tasks have demonstrated that our proposed method not only outperforms the existing state-of-the-art deraining method but also achieves visually pleasuring results with excellent robustness on downstream vision tasks.