ImplicitStainer: Data-Efficient Medical Image Translation for Virtual Antibody-based Tissue Staining Using Local Implicit Functions

Hematoxylin and eosin (H&E) staining is a gold standard for microscopic diagnosis in pathology. However, H&E staining does not capture all the diagnostic information that may be needed. To obtain additional molecular information, immunohistochemical (IHC) stains highlight proteins that mark specific cell types, such as CD3 for T-cells or CK8/18 for epithelial cells. While IHC stains are vital for prognosis and treatment guidance, they are typically only available at specialized centers and time consuming to acquire, leading to treatment delays for patients. Virtual staining, enabled by deep learning-based image translation models, provides a promising alternative by computationally generating IHC stains from H&E stained images. Although many GAN and diffusion based image to image (I2I) translation methods have been used for virtual staining, these models treat image patches as independent data points, which results in increased and more diverse data requirements for effective generation. We present ImplicitStainer, a novel approach that leverages local implicit functions to improve image translation, specifically virtual staining performance, by focusing on pixel-level predictions. This method enhances robustness to variations in dataset sizes, delivering high-quality results even with limited data. We validate our approach on two datasets using a comprehensive set of metrics and benchmark it against over fifteen state-of-the-art GAN- and diffusion based models. Full Code and models trained will be released publicly via Github upon acceptance.

Unified Cross-modal Translation of Score Images, Symbolic Music, and Performance Audio

Music exists in various modalities, such as score images, symbolic scores, MIDI, and audio. Translations between each modality are established as core tasks of music information retrieval, such as automatic music transcription (audio-to-MIDI) and optical music recognition (score image to symbolic score). However, most past work on multimodal translation trains specialized models on individual translation tasks. In this paper, we propose a unified approach, where we train a general-purpose model on many translation tasks simultaneously. Two key factors make this unified approach viable: a new large-scale dataset and the tokenization of each modality. Firstly, we propose a new dataset that consists of more than 1,300 hours of paired audio-score image data collected from YouTube videos, which is an order of magnitude larger than any existing music modal translation datasets. Secondly, our unified tokenization framework discretizes score images, audio, MIDI, and MusicXML into a sequence of tokens, enabling a single encoder-decoder Transformer to tackle multiple cross-modal translation as one coherent sequence-to-sequence task. Experimental results confirm that our unified multitask model improves upon single-task baselines in several key areas, notably reducing the symbol error rate for optical music recognition from 24.58% to a state-of-the-art 13.67%, while similarly substantial improvements are observed across the other translation tasks. Notably, our approach achieves the first successful score-image-conditioned audio generation, marking a significant breakthrough in cross-modal music generation.

Translation-Equivariance of Normalization Layers and Aliasing in Convolutional Neural Networks

The design of convolutional neural architectures that are exactly equivariant to continuous translations is an active field of research. It promises to benefit scientific computing, notably by making existing imaging systems more physically accurate. Most efforts focus on the design of downsampling/pooling layers, upsampling layers and activation functions, but little attention is dedicated to normalization layers. In this work, we present a novel theoretical framework for understanding the equivariance of normalization layers to discrete shifts and continuous translations. We also determine necessary and sufficient conditions for normalization layers to be equivariant in terms of the dimensions they operate on. Using real feature maps from ResNet-18 and ImageNet, we test those theoretical results empirically and find that they are consistent with our predictions.

The Role of AI in Early Detection of Life-Threatening Diseases: A Retinal Imaging Perspective

Retinal imaging has emerged as a powerful, non-invasive modality for detecting and quantifying biomarkers of systemic diseases-ranging from diabetes and hypertension to Alzheimer's disease and cardiovascular disorders but current insights remain dispersed across platforms and specialties. Recent technological advances in optical coherence tomography (OCT/OCTA) and adaptive optics (AO) now deliver ultra-high-resolution scans (down to 5 {\mu}m ) with superior contrast and spatial integration, allowing early identification of microvascular abnormalities and neurodegenerative changes. At the same time, AI-driven and machine learning (ML) algorithms have revolutionized the analysis of large-scale retinal datasets, increasing sensitivity and specificity; for example, deep learning models achieve > 90 \% sensitivity for diabetic retinopathy and AUC = 0.89 for the prediction of cardiovascular risk from fundus photographs. The proliferation of mobile health technologies and telemedicine platforms further extends access, reduces costs, and facilitates community-based screening and longitudinal monitoring. Despite these breakthroughs, translation into routine practice is hindered by heterogeneous imaging protocols, limited external validation of AI models, and integration challenges within clinical workflows. In this review, we systematically synthesize the latest OCT/OCT and AO developments, AI/ML approaches, and mHealth/Tele-ophthalmology initiatives and quantify their diagnostic performance across disease domains. Finally, we propose a roadmap for multicenter protocol standardization, prospective validation trials, and seamless incorporation of retinal screening into primary and specialty care pathways-paving the way for precision prevention, early intervention, and ongoing treatment of life-threatening systemic diseases.

LeDiFlow: Learned Distribution-guided Flow Matching to Accelerate Image Generation

Enhancing the efficiency of high-quality image generation using Diffusion Models (DMs) is a significant challenge due to the iterative nature of the process. Flow Matching (FM) is emerging as a powerful generative modeling paradigm based on a simulation-free training objective instead of a score-based one used in DMs. Typical FM approaches rely on a Gaussian distribution prior, which induces curved, conditional probability paths between the prior and target data distribution. These curved paths pose a challenge for the Ordinary Differential Equation (ODE) solver, requiring a large number of inference calls to the flow prediction network. To address this issue, we present Learned Distribution-guided Flow Matching (LeDiFlow), a novel scalable method for training FM-based image generation models using a better-suited prior distribution learned via a regression-based auxiliary model. By initializing the ODE solver with a prior closer to the target data distribution, LeDiFlow enables the learning of more computationally tractable probability paths. These paths directly translate to fewer solver steps needed for high-quality image generation at inference time. Our method utilizes a State-Of-The-Art (SOTA) transformer architecture combined with latent space sampling and can be trained on a consumer workstation. We empirically demonstrate that LeDiFlow remarkably outperforms the respective FM baselines. For instance, when operating directly on pixels, our model accelerates inference by up to 3.75x compared to the corresponding pixel-space baseline. Simultaneously, our latent FM model enhances image quality on average by 1.32x in CLIP Maximum Mean Discrepancy (CMMD) metric against its respective baseline.

Multimodal Machine Translation with Visual Scene Graph Pruning

Multimodal machine translation (MMT) seeks to address the challenges posed by linguistic polysemy and ambiguity in translation tasks by incorporating visual information. A key bottleneck in current MMT research is the effective utilization of visual data. Previous approaches have focused on extracting global or region-level image features and using attention or gating mechanisms for multimodal information fusion. However, these methods have not adequately tackled the issue of visual information redundancy in MMT, nor have they proposed effective solutions. In this paper, we introduce a novel approach--multimodal machine translation with visual Scene Graph Pruning (PSG), which leverages language scene graph information to guide the pruning of redundant nodes in visual scene graphs, thereby reducing noise in downstream translation tasks. Through extensive comparative experiments with state-of-the-art methods and ablation studies, we demonstrate the effectiveness of the PSG model. Our results also highlight the promising potential of visual information pruning in advancing the field of MMT.

ABS-Mamba: SAM2-Driven Bidirectional Spiral Mamba Network for Medical Image Translation

Accurate multi-modal medical image translation requires ha-rmonizing global anatomical semantics and local structural fidelity, a challenge complicated by intermodality information loss and structural distortion. We propose ABS-Mamba, a novel architecture integrating the Segment Anything Model 2 (SAM2) for organ-aware semantic representation, specialized convolutional neural networks (CNNs) for preserving modality-specific edge and texture details, and Mamba's selective state-space modeling for efficient long- and short-range feature dependencies. Structurally, our dual-resolution framework leverages SAM2's image encoder to capture organ-scale semantics from high-resolution inputs, while a parallel CNNs branch extracts fine-grained local features. The Robust Feature Fusion Network (RFFN) integrates these epresentations, and the Bidirectional Mamba Residual Network (BMRN) models spatial dependencies using spiral scanning and bidirectional state-space dynamics. A three-stage skip fusion decoder enhances edge and texture fidelity. We employ Efficient Low-Rank Adaptation (LoRA+) fine-tuning to enable precise domain specialization while maintaining the foundational capabilities of the pre-trained components. Extensive experimental validation on the SynthRAD2023 and BraTS2019 datasets demonstrates that ABS-Mamba outperforms state-of-the-art methods, delivering high-fidelity cross-modal synthesis that preserves anatomical semantics and structural details to enhance diagnostic accuracy in clinical applications. The code is available at https://github.com/gatina-yone/ABS-Mamba

DDFP: Data-dependent Frequency Prompt for Source Free Domain Adaptation of Medical Image Segmentation

Domain adaptation addresses the challenge of model performance degradation caused by domain gaps. In the typical setup for unsupervised domain adaptation, labeled data from a source domain and unlabeled data from a target domain are used to train a target model. However, access to labeled source domain data, particularly in medical datasets, can be restricted due to privacy policies. As a result, research has increasingly shifted to source-free domain adaptation (SFDA), which requires only a pretrained model from the source domain and unlabeled data from the target domain data for adaptation. Existing SFDA methods often rely on domain-specific image style translation and self-supervision techniques to bridge the domain gap and train the target domain model. However, the quality of domain-specific style-translated images and pseudo-labels produced by these methods still leaves room for improvement. Moreover, training the entire model during adaptation can be inefficient under limited supervision. In this paper, we propose a novel SFDA framework to address these challenges. Specifically, to effectively mitigate the impact of domain gap in the initial training phase, we introduce preadaptation to generate a preadapted model, which serves as an initialization of target model and allows for the generation of high-quality enhanced pseudo-labels without introducing extra parameters. Additionally, we propose a data-dependent frequency prompt to more effectively translate target domain images into a source-like style. To further enhance adaptation, we employ a style-related layer fine-tuning strategy, specifically designed for SFDA, to train the target model using the prompted target domain images and pseudo-labels. Extensive experiments on cross-modality abdominal and cardiac SFDA segmentation tasks demonstrate that our proposed method outperforms existing state-of-the-art methods.

Adaptive Spatial Augmentation for Semi-supervised Semantic Segmentation

In semi-supervised semantic segmentation (SSSS), data augmentation plays a crucial role in the weak-to-strong consistency regularization framework, as it enhances diversity and improves model generalization. Recent strong augmentation methods have primarily focused on intensity-based perturbations, which have minimal impact on the semantic masks. In contrast, spatial augmentations like translation and rotation have long been acknowledged for their effectiveness in supervised semantic segmentation tasks, but they are often ignored in SSSS. In this work, we demonstrate that spatial augmentation can also contribute to model training in SSSS, despite generating inconsistent masks between the weak and strong augmentations. Furthermore, recognizing the variability among images, we propose an adaptive augmentation strategy that dynamically adjusts the augmentation for each instance based on entropy. Extensive experiments show that our proposed Adaptive Spatial Augmentation (\textbf{ASAug}) can be integrated as a pluggable module, consistently improving the performance of existing methods and achieving state-of-the-art results on benchmark datasets such as PASCAL VOC 2012, Cityscapes, and COCO.

Learning to Adapt to Position Bias in Vision Transformer Classifiers

How discriminative position information is for image classification depends on the data. On the one hand, the camera position is arbitrary and objects can appear anywhere in the image, arguing for translation invariance. At the same time, position information is key for exploiting capture/center bias, and scene layout, e.g.: the sky is up. We show that position bias, the level to which a dataset is more easily solved when positional information on input features is used, plays a crucial role in the performance of Vision Transformers image classifiers. To investigate, we propose Position-SHAP, a direct measure of position bias by extending SHAP to work with position embeddings. We show various levels of position bias in different datasets, and find that the optimal choice of position embedding depends on the position bias apparent in the dataset. We therefore propose Auto-PE, a single-parameter position embedding extension, which allows the position embedding to modulate its norm, enabling the unlearning of position information. Auto-PE combines with existing PEs to match or improve accuracy on classification datasets.