SAMSA: Segment Anything Model Enhanced with Spectral Angles for Hyperspectral Interactive Medical Image Segmentation

Hyperspectral imaging (HSI) provides rich spectral information for medical imaging, yet encounters significant challenges due to data limitations and hardware variations. We introduce SAMSA, a novel interactive segmentation framework that combines an RGB foundation model with spectral analysis. SAMSA efficiently utilizes user clicks to guide both RGB segmentation and spectral similarity computations. The method addresses key limitations in HSI segmentation through a unique spectral feature fusion strategy that operates independently of spectral band count and resolution. Performance evaluation on publicly available datasets has shown 81.0% 1-click and 93.4% 5-click DICE on a neurosurgical and 81.1% 1-click and 89.2% 5-click DICE on an intraoperative porcine hyperspectral dataset. Experimental results demonstrate SAMSA's effectiveness in few-shot and zero-shot learning scenarios and using minimal training examples. Our approach enables seamless integration of datasets with different spectral characteristics, providing a flexible framework for hyperspectral medical image analysis.

Omni-Fusion of Spatial and Spectral for Hyperspectral Image Segmentation

Medical Hyperspectral Imaging (MHSI) has emerged as a promising tool for enhanced disease diagnosis, particularly in computational pathology, offering rich spectral information that aids in identifying subtle biochemical properties of tissues. Despite these advantages, effectively fusing both spatial-dimensional and spectral-dimensional information from MHSIs remains challenging due to its high dimensionality and spectral redundancy inherent characteristics. To solve the above challenges, we propose a novel spatial-spectral omni-fusion network for hyperspectral image segmentation, named as Omni-Fuse. Here, we introduce abundant cross-dimensional feature fusion operations, including a cross-dimensional enhancement module that refines both spatial and spectral features through bidirectional attention mechanisms, a spectral-guided spatial query selection to select the most spectral-related spatial feature as the query, and a two-stage cross-dimensional decoder which dynamically guide the model to focus on the selected spatial query. Despite of numerous attention blocks, Omni-Fuse remains efficient in execution. Experiments on two microscopic hyperspectral image datasets show that our approach can significantly improve the segmentation performance compared with the state-of-the-art methods, with over 5.73 percent improvement in DSC. Code available at: https://github.com/DeepMed-Lab-ECNU/Omni-Fuse.

Structural-Spectral Graph Convolution with Evidential Edge Learning for Hyperspectral Image Clustering

Hyperspectral image (HSI) clustering assigns similar pixels to the same class without any annotations, which is an important yet challenging task. For large-scale HSIs, most methods rely on superpixel segmentation and perform superpixel-level clustering based on graph neural networks (GNNs). However, existing GNNs cannot fully exploit the spectral information of the input HSI, and the inaccurate superpixel topological graph may lead to the confusion of different class semantics during information aggregation. To address these challenges, we first propose a structural-spectral graph convolutional operator (SSGCO) tailored for graph-structured HSI superpixels to improve their representation quality through the co-extraction of spatial and spectral features. Second, we propose an evidence-guided adaptive edge learning (EGAEL) module that adaptively predicts and refines edge weights in the superpixel topological graph. We integrate the proposed method into a contrastive learning framework to achieve clustering, where representation learning and clustering are simultaneously conducted. Experiments demonstrate that the proposed method improves clustering accuracy by 2.61%, 6.06%, 4.96% and 3.15% over the best compared methods on four HSI datasets. Our code is available at https://github.com/jhqi/SSGCO-EGAEL.

A Time Series Dataset of NIR Spectra and RGB and NIR-HSI Images of the Barley Germination Process

We provide an open-source dataset of RGB and NIR-HSI (near-infrared hyperspectral imaging) images with associated segmentation masks and NIR spectra of 2242 individual malting barley kernels. We imaged every kernel pre-exposure to moisture and every 24 hours after exposure to moisture for five consecutive days. Every barley kernel was labeled as germinated or not germinated during each image acquisition. The barley kernels were imaged with black filter paper as the background, facilitating straight-forward intensity threshold-based segmentation, e.g., by Otsu's method. This dataset facilitates time series analysis of germination time for barley kernels using either RGB image analysis, NIR spectral analysis, NIR-HSI analysis, or a combination hereof.

Balancing Robustness and Efficiency in Embedded DNNs Through Activation Function Selection

Machine learning-based embedded systems for safety-critical applications, such as aerospace and autonomous driving, must be robust to perturbations caused by soft errors. As transistor geometries shrink and voltages decrease, modern electronic devices become more susceptible to background radiation, increasing the concern about failures produced by soft errors. The resilience of deep neural networks (DNNs) to these errors depends not only on target device technology but also on model structure and the numerical representation and arithmetic precision of their parameters. Compression techniques like pruning and quantization, used to reduce memory footprint and computational complexity, alter both model structure and representation, affecting soft error robustness. In this regard, although often overlooked, the choice of activation functions (AFs) impacts not only accuracy and trainability but also compressibility and error resilience. This paper explores the use of bounded AFs to enhance robustness against parameter perturbations, while evaluating their effects on model accuracy, compressibility, and computational load with a technology-agnostic approach. We focus on encoder-decoder convolutional models developed for semantic segmentation of hyperspectral images with application to autonomous driving systems. Experiments are conducted on an AMD-Xilinx's KV260 SoM.

Hyperspectral image segmentation with a machine learning model trained using quantum annealer

Training of machine learning models consumes large amounts of energy. Since the energy consumption becomes a major problem in the development and implementation of artificial intelligence systems there exists a need to investigate the ways to reduce use of the resources by these systems. In this work we study how application of quantum annealers could lead to reduction of energy cost in training models aiming at pixel-level segmentation of hyperspectral images. Following the results of QBM4EO team, we propose a classical machine learning model, partially trained using quantum annealer, for hyperspectral image segmentation. We show that the model trained using quantum annealer is better or at least comparable with models trained using alternative algorithms, according to the preselected, common metrics. While direct energy use comparison does not make sense at the current stage of quantum computing technology development, we believe that our work proves that quantum annealing should be considered as a tool for training at least some machine learning models.

MDN: Mamba-Driven Dualstream Network For Medical Hyperspectral Image Segmentation

Medical Hyperspectral Imaging (MHSI) offers potential for computational pathology and precision medicine. However, existing CNN and Transformer struggle to balance segmentation accuracy and speed due to high spatial-spectral dimensionality. In this study, we leverage Mamba's global context modeling to propose a dual-stream architecture for joint spatial-spectral feature extraction. To address the limitation of Mamba's unidirectional aggregation, we introduce a recurrent spectral sequence representation to capture low-redundancy global spectral features. Experiments on a public Multi-Dimensional Choledoch dataset and a private Cervical Cancer dataset show that our method outperforms state-of-the-art approaches in segmentation accuracy while minimizing resource usage and achieving the fastest inference speed. Our code will be available at https://github.com/DeepMed-Lab-ECNU/MDN.

When Segmentation Meets Hyperspectral Image: New Paradigm for Hyperspectral Image Classification

Hyperspectral image (HSI) classification is a cornerstone of remote sensing, enabling precise material and land-cover identification through rich spectral information. While deep learning has driven significant progress in this task, small patch-based classifiers, which account for over 90% of the progress, face limitations: (1) the small patch (e.g., 7x7, 9x9)-based sampling approach considers a limited receptive field, resulting in insufficient spatial structural information critical for object-level identification and noise-like misclassifications even within uniform regions; (2) undefined optimal patch sizes lead to coarse label predictions, which degrade performance; and (3) a lack of multi-shape awareness around objects. To address these challenges, we draw inspiration from large-scale image segmentation techniques, which excel at handling object boundaries-a capability essential for semantic labeling in HSI classification. However, their application remains under-explored in this task due to (1) the prevailing notion that larger patch sizes degrade performance, (2) the extensive unlabeled regions in HSI groundtruth, and (3) the misalignment of input shapes between HSI data and segmentation models. Thus, in this study, we propose a novel paradigm and baseline, HSIseg, for HSI classification that leverages segmentation techniques combined with a novel Dynamic Shifted Regional Transformer (DSRT) to overcome these challenges. We also introduce an intuitive progressive learning framework with adaptive pseudo-labeling to iteratively incorporate unlabeled regions into the training process, thereby advancing the application of segmentation techniques. Additionally, we incorporate auxiliary data through multi-source data collaboration, promoting better feature interaction. Validated on five public HSI datasets, our proposal outperforms state-of-the-art methods.

Hyperspectral Imaging for Identifying Foreign Objects on Pork Belly

Ensuring food safety and quality is critical in the food processing industry, where the detection of contaminants remains a persistent challenge. This study presents an automated solution for detecting foreign objects on pork belly meat using hyperspectral imaging (HSI). A hyperspectral camera was used to capture data across various bands in the near-infrared (NIR) spectrum (900-1700 nm), enabling accurate identification of contaminants that are often undetectable through traditional visual inspection methods. The proposed solution combines pre-processing techniques with a segmentation approach based on a lightweight Vision Transformer (ViT) to distinguish contaminants from meat, fat, and conveyor belt materials. The adopted strategy demonstrates high detection accuracy and training efficiency, while also addressing key industrial challenges such as inherent noise, temperature variations, and spectral similarity between contaminants and pork belly. Experimental results validate the effectiveness of hyperspectral imaging in enhancing food safety, highlighting its potential for broad real-time applications in automated quality control processes.

SpecDM: Hyperspectral Dataset Synthesis with Pixel-level Semantic Annotations

In hyperspectral remote sensing field, some downstream dense prediction tasks, such as semantic segmentation (SS) and change detection (CD), rely on supervised learning to improve model performance and require a large amount of manually annotated data for training. However, due to the needs of specific equipment and special application scenarios, the acquisition and annotation of hyperspectral images (HSIs) are often costly and time-consuming. To this end, our work explores the potential of generative diffusion model in synthesizing HSIs with pixel-level annotations. The main idea is to utilize a two-stream VAE to learn the latent representations of images and corresponding masks respectively, learn their joint distribution during the diffusion model training, and finally obtain the image and mask through their respective decoders. To the best of our knowledge, it is the first work to generate high-dimensional HSIs with annotations. Our proposed approach can be applied in various kinds of dataset generation. We select two of the most widely used dense prediction tasks: semantic segmentation and change detection, and generate datasets suitable for these tasks. Experiments demonstrate that our synthetic datasets have a positive impact on the improvement of these downstream tasks.