Perception Activator: An intuitive and portable framework for brain cognitive exploration

Recent advances in brain-vision decoding have driven significant progress, reconstructing with high fidelity perceived visual stimuli from neural activity, e.g., functional magnetic resonance imaging (fMRI), in the human visual cortex. Most existing methods decode the brain signal using a two-level strategy, i.e., pixel-level and semantic-level. However, these methods rely heavily on low-level pixel alignment yet lack sufficient and fine-grained semantic alignment, resulting in obvious reconstruction distortions of multiple semantic objects. To better understand the brain's visual perception patterns and how current decoding models process semantic objects, we have developed an experimental framework that uses fMRI representations as intervention conditions. By injecting these representations into multi-scale image features via cross-attention, we compare both downstream performance and intermediate feature changes on object detection and instance segmentation tasks with and without fMRI information. Our results demonstrate that incorporating fMRI signals enhances the accuracy of downstream detection and segmentation, confirming that fMRI contains rich multi-object semantic cues and coarse spatial localization information-elements that current models have yet to fully exploit or integrate.

HAVIR: HierArchical Vision to Image Reconstruction using CLIP-Guided Versatile Diffusion

Reconstructing visual information from brain activity bridges the gap between neuroscience and computer vision. Even though progress has been made in decoding images from fMRI using generative models, a challenge remains in accurately recovering highly complex visual stimuli. This difficulty stems from their elemental density and diversity, sophisticated spatial structures, and multifaceted semantic information. To address these challenges, we propose HAVIR that contains two adapters: (1) The AutoKL Adapter transforms fMRI voxels into a latent diffusion prior, capturing topological structures; (2) The CLIP Adapter converts the voxels to CLIP text and image embeddings, containing semantic information. These complementary representations are fused by Versatile Diffusion to generate the final reconstructed image. To extract the most essential semantic information from complex scenarios, the CLIP Adapter is trained with text captions describing the visual stimuli and their corresponding semantic images synthesized from these captions. The experimental results demonstrate that HAVIR effectively reconstructs both structural features and semantic information of visual stimuli even in complex scenarios, outperforming existing models.

NSD-Imagery: A benchmark dataset for extending fMRI vision decoding methods to mental imagery

We release NSD-Imagery, a benchmark dataset of human fMRI activity paired with mental images, to complement the existing Natural Scenes Dataset (NSD), a large-scale dataset of fMRI activity paired with seen images that enabled unprecedented improvements in fMRI-to-image reconstruction efforts. Recent models trained on NSD have been evaluated only on seen image reconstruction. Using NSD-Imagery, it is possible to assess how well these models perform on mental image reconstruction. This is a challenging generalization requirement because mental images are encoded in human brain activity with relatively lower signal-to-noise and spatial resolution; however, generalization from seen to mental imagery is critical for real-world applications in medical domains and brain-computer interfaces, where the desired information is always internally generated. We provide benchmarks for a suite of recent NSD-trained open-source visual decoding models (MindEye1, MindEye2, Brain Diffuser, iCNN, Takagi et al.) on NSD-Imagery, and show that the performance of decoding methods on mental images is largely decoupled from performance on vision reconstruction. We further demonstrate that architectural choices significantly impact cross-decoding performance: models employing simple linear decoding architectures and multimodal feature decoding generalize better to mental imagery, while complex architectures tend to overfit visual training data. Our findings indicate that mental imagery datasets are critical for the development of practical applications, and establish NSD-Imagery as a useful resource for better aligning visual decoding methods with this goal.

Improving Brain-to-Image Reconstruction via Fine-Grained Text Bridging

Brain-to-Image reconstruction aims to recover visual stimuli perceived by humans from brain activity. However, the reconstructed visual stimuli often missing details and semantic inconsistencies, which may be attributed to insufficient semantic information. To address this issue, we propose an approach named Fine-grained Brain-to-Image reconstruction (FgB2I), which employs fine-grained text as bridge to improve image reconstruction. FgB2I comprises three key stages: detail enhancement, decoding fine-grained text descriptions, and text-bridged brain-to-image reconstruction. In the detail-enhancement stage, we leverage large vision-language models to generate fine-grained captions for visual stimuli and experimentally validate its importance. We propose three reward metrics (object accuracy, text-image semantic similarity, and image-image semantic similarity) to guide the language model in decoding fine-grained text descriptions from fMRI signals. The fine-grained text descriptions can be integrated into existing reconstruction methods to achieve fine-grained Brain-to-Image reconstruction.

MoRE-Brain: Routed Mixture of Experts for Interpretable and Generalizable Cross-Subject fMRI Visual Decoding

Decoding visual experiences from fMRI offers a powerful avenue to understand human perception and develop advanced brain-computer interfaces. However, current progress often prioritizes maximizing reconstruction fidelity while overlooking interpretability, an essential aspect for deriving neuroscientific insight. To address this gap, we propose MoRE-Brain, a neuro-inspired framework designed for high-fidelity, adaptable, and interpretable visual reconstruction. MoRE-Brain uniquely employs a hierarchical Mixture-of-Experts architecture where distinct experts process fMRI signals from functionally related voxel groups, mimicking specialized brain networks. The experts are first trained to encode fMRI into the frozen CLIP space. A finetuned diffusion model then synthesizes images, guided by expert outputs through a novel dual-stage routing mechanism that dynamically weighs expert contributions across the diffusion process. MoRE-Brain offers three main advancements: First, it introduces a novel Mixture-of-Experts architecture grounded in brain network principles for neuro-decoding. Second, it achieves efficient cross-subject generalization by sharing core expert networks while adapting only subject-specific routers. Third, it provides enhanced mechanistic insight, as the explicit routing reveals precisely how different modeled brain regions shape the semantic and spatial attributes of the reconstructed image. Extensive experiments validate MoRE-Brain's high reconstruction fidelity, with bottleneck analyses further demonstrating its effective utilization of fMRI signals, distinguishing genuine neural decoding from over-reliance on generative priors. Consequently, MoRE-Brain marks a substantial advance towards more generalizable and interpretable fMRI-based visual decoding. Code will be publicly available soon: https://github.com/yuxiangwei0808/MoRE-Brain.

FreqSelect: Frequency-Aware fMRI-to-Image Reconstruction

Reconstructing natural images from functional magnetic resonance imaging (fMRI) data remains a core challenge in natural decoding due to the mismatch between the richness of visual stimuli and the noisy, low resolution nature of fMRI signals. While recent two-stage models, combining deep variational autoencoders (VAEs) with diffusion models, have advanced this task, they treat all spatial-frequency components of the input equally. This uniform treatment forces the model to extract meaning features and suppress irrelevant noise simultaneously, limiting its effectiveness. We introduce FreqSelect, a lightweight, adaptive module that selectively filters spatial-frequency bands before encoding. By dynamically emphasizing frequencies that are most predictive of brain activity and suppressing those that are uninformative, FreqSelect acts as a content-aware gate between image features and natural data. It integrates seamlessly into standard very deep VAE-diffusion pipelines and requires no additional supervision. Evaluated on the Natural Scenes dataset, FreqSelect consistently improves reconstruction quality across both low- and high-level metrics. Beyond performance gains, the learned frequency-selection patterns offer interpretable insights into how different visual frequencies are represented in the brain. Our method generalizes across subjects and scenes, and holds promise for extension to other neuroimaging modalities, offering a principled approach to enhancing both decoding accuracy and neuroscientific interpretability.

Coherent Language Reconstruction from Brain Recordings with Flexible Multi-Modal Input Stimuli

Decoding thoughts from brain activity offers valuable insights into human cognition and enables promising applications in brain-computer interaction. While prior studies have explored language reconstruction from fMRI data, they are typically limited to single-modality inputs such as images or audio. In contrast, human thought is inherently multimodal. To bridge this gap, we propose a unified and flexible framework for reconstructing coherent language from brain recordings elicited by diverse input modalities-visual, auditory, and textual. Our approach leverages visual-language models (VLMs), using modality-specific experts to jointly interpret information across modalities. Experiments demonstrate that our method achieves performance comparable to state-of-the-art systems while remaining adaptable and extensible. This work advances toward more ecologically valid and generalizable mind decoding.

Efficient Multi Subject Visual Reconstruction from fMRI Using Aligned Representations

This work introduces a novel approach to fMRI-based visual image reconstruction using a subject-agnostic common representation space. We show that the brain signals of the subjects can be aligned in this common space during training to form a semantically aligned common brain. This is leveraged to demonstrate that aligning subject-specific lightweight modules to a reference subject is significantly more efficient than traditional end-to-end training methods. Our approach excels in low-data scenarios. We evaluate our methods on different datasets, demonstrating that the common space is subject and dataset-agnostic.

Mind2Matter: Creating 3D Models from EEG Signals

The reconstruction of 3D objects from brain signals has gained significant attention in brain-computer interface (BCI) research. Current research predominantly utilizes functional magnetic resonance imaging (fMRI) for 3D reconstruction tasks due to its excellent spatial resolution. Nevertheless, the clinical utility of fMRI is limited by its prohibitive costs and inability to support real-time operations. In comparison, electroencephalography (EEG) presents distinct advantages as an affordable, non-invasive, and mobile solution for real-time brain-computer interaction systems. While recent advances in deep learning have enabled remarkable progress in image generation from neural data, decoding EEG signals into structured 3D representations remains largely unexplored. In this paper, we propose a novel framework that translates EEG recordings into 3D object reconstructions by leveraging neural decoding techniques and generative models. Our approach involves training an EEG encoder to extract spatiotemporal visual features, fine-tuning a large language model to interpret these features into descriptive multimodal outputs, and leveraging generative 3D Gaussians with layout-guided control to synthesize the final 3D structures. Experiments demonstrate that our model captures salient geometric and semantic features, paving the way for applications in brain-computer interfaces (BCIs), virtual reality, and neuroprosthetics.Our code is available in https://github.com/sddwwww/Mind2Matter.

Neurons: Emulating the Human Visual Cortex Improves Fidelity and Interpretability in fMRI-to-Video Reconstruction

Decoding visual stimuli from neural activity is essential for understanding the human brain. While fMRI methods have successfully reconstructed static images, fMRI-to-video reconstruction faces challenges due to the need for capturing spatiotemporal dynamics like motion and scene transitions. Recent approaches have improved semantic and perceptual alignment but struggle to integrate coarse fMRI data with detailed visual features. Inspired by the hierarchical organization of the visual system, we propose NEURONS, a novel framework that decouples learning into four correlated sub-tasks: key object segmentation, concept recognition, scene description, and blurry video reconstruction. This approach simulates the visual cortex's functional specialization, allowing the model to capture diverse video content. In the inference stage, NEURONS generates robust conditioning signals for a pre-trained text-to-video diffusion model to reconstruct the videos. Extensive experiments demonstrate that NEURONS outperforms state-of-the-art baselines, achieving solid improvements in video consistency (26.6%) and semantic-level accuracy (19.1%). Notably, NEURONS shows a strong functional correlation with the visual cortex, highlighting its potential for brain-computer interfaces and clinical applications. Code and model weights will be available at: https://github.com/xmed-lab/NEURONS.