Ontology Enrichment from Texts: A Biomedical Dataset for Concept Discovery and Placement

Mentions of new concepts appear regularly in texts and require automated approaches to harvest and place them into Knowledge Bases (KB), e.g., ontologies and taxonomies. Existing datasets suffer from three issues, (i) mostly assuming that a new concept is pre-discovered and cannot support out-of-KB mention discovery; (ii) only using the concept label as the input along with the KB and thus lacking the contexts of a concept label; and (iii) mostly focusing on concept placement w.r.t a taxonomy of atomic concepts, instead of complex concepts, i.e., with logical operators. To address these issues, we propose a new benchmark, adapting MedMentions dataset (PubMed abstracts) with SNOMED CT versions in 2014 and 2017 under the Diseases sub-category and the broader categories of Clinical finding, Procedure, and Pharmaceutical / biologic product. We provide usage on the evaluation with the dataset for out-of-KB mention discovery and concept placement, adapting recent Large Language Model based methods.

Trend-Based SAC Beam Control Method with Zero-Shot in Superconducting Linear Accelerator

The superconducting linear accelerator is a highly flexiable facility for modern scientific discoveries, necessitating weekly reconfiguration and tuning. Accordingly, minimizing setup time proves essential in affording users with ample experimental time. We propose a trend-based soft actor-critic(TBSAC) beam control method with strong robustness, allowing the agents to be trained in a simulated environment and applied to the real accelerator directly with zero-shot. To validate the effectiveness of our method, two different typical beam control tasks were performed on China Accelerator Facility for Superheavy Elements (CAFe II) and a light particle injector(LPI) respectively. The orbit correction tasks were performed in three cryomodules in CAFe II seperately, the time required for tuning has been reduced to one-tenth of that needed by human experts, and the RMS values of the corrected orbit were all less than 1mm. The other transmission efficiency optimization task was conducted in the LPI, our agent successfully optimized the transmission efficiency of radio-frequency quadrupole(RFQ) to over $85\%$ within 2 minutes. The outcomes of these two experiments offer substantiation that our proposed TBSAC approach can efficiently and effectively accomplish beam commissioning tasks while upholding the same standard as skilled human experts. As such, our method exhibits potential for future applications in other accelerator commissioning fields.

DAISM: Digital Approximate In-SRAM Multiplier-based Accelerator for DNN Training and Inference

DNNs are one of the most widely used Deep Learning models. The matrix multiplication operations for DNNs incur significant computational costs and are bottlenecked by data movement between the memory and the processing elements. Many specialized accelerators have been proposed to optimize matrix multiplication operations. One popular idea is to use Processing-in-Memory where computations are performed by the memory storage element, thereby reducing the overhead of data movement between processor and memory. However, most PIM solutions rely either on novel memory technologies that have yet to mature or bit-serial computations which have significant performance overhead and scalability issues. In this work, an in-SRAM digital multiplier is proposed to take the best of both worlds, i.e. performing GEMM in memory but using only conventional SRAMs without the drawbacks of bit-serial computations. This allows the user to design systems with significant performance gains using existing technologies with little to no modifications. We first design a novel approximate bit-parallel multiplier that approximates multiplications with bitwise OR operations by leveraging multiple wordlines activation in the SRAM. We then propose DAISM - Digital Approximate In-SRAM Multiplier architecture, an accelerator for convolutional neural networks, based on our novel multiplier. This is followed by a comprehensive analysis of trade-offs in area, accuracy, and performance. We show that under similar design constraints, DAISM reduces energy consumption by 25\% and the number of cycles by 43\% compared to state-of-the-art baselines.

Augment and Criticize: Exploring Informative Samples for Semi-Supervised Monocular 3D Object Detection

In this paper, we improve the challenging monocular 3D object detection problem with a general semi-supervised framework. Specifically, having observed that the bottleneck of this task lies in lacking reliable and informative samples to train the detector, we introduce a novel, simple, yet effective `Augment and Criticize' framework that explores abundant informative samples from unlabeled data for learning more robust detection models. In the `Augment' stage, we present the Augmentation-based Prediction aGgregation (APG), which aggregates detections from various automatically learned augmented views to improve the robustness of pseudo label generation. Since not all pseudo labels from APG are beneficially informative, the subsequent `Criticize' phase is presented. In particular, we introduce the Critical Retraining Strategy (CRS) that, unlike simply filtering pseudo labels using a fixed threshold (e.g., classification score) as in 2D semi-supervised tasks, leverages a learnable network to evaluate the contribution of unlabeled images at different training timestamps. This way, the noisy samples prohibitive to model evolution could be effectively suppressed. To validate our framework, we apply it to MonoDLE and MonoFlex. The two new detectors, dubbed 3DSeMo_DLE and 3DSeMo_FLEX, achieve state-of-the-art results with remarkable improvements for over 3.5% AP_3D/BEV (Easy) on KITTI, showing its effectiveness and generality. Code and models will be released.

To Make Yourself Invisible with Adversarial Semantic Contours

Modern object detectors are vulnerable to adversarial examples, which may bring risks to real-world applications. The sparse attack is an important task which, compared with the popular adversarial perturbation on the whole image, needs to select the potential pixels that is generally regularized by an $\ell_0$-norm constraint, and simultaneously optimize the corresponding texture. The non-differentiability of $\ell_0$ norm brings challenges and many works on attacking object detection adopted manually-designed patterns to address them, which are meaningless and independent of objects, and therefore lead to relatively poor attack performance. In this paper, we propose Adversarial Semantic Contour (ASC), an MAP estimate of a Bayesian formulation of sparse attack with a deceived prior of object contour. The object contour prior effectively reduces the search space of pixel selection and improves the attack by introducing more semantic bias. Extensive experiments demonstrate that ASC can corrupt the prediction of 9 modern detectors with different architectures (\e.g., one-stage, two-stage and Transformer) by modifying fewer than 5\% of the pixels of the object area in COCO in white-box scenario and around 10\% of those in black-box scenario. We further extend the attack to datasets for autonomous driving systems to verify the effectiveness. We conclude with cautions about contour being the common weakness of object detectors with various architecture and the care needed in applying them in safety-sensitive scenarios.

Improving Model Generalization by On-manifold Adversarial Augmentation in the Frequency Domain

Deep neural networks (DNNs) may suffer from significantly degenerated performance when the training and test data are of different underlying distributions. Despite the importance of model generalization to out-of-distribution (OOD) data, the accuracy of state-of-the-art (SOTA) models on OOD data can plummet. Recent work has demonstrated that regular or off-manifold adversarial examples, as a special case of data augmentation, can be used to improve OOD generalization. Inspired by this, we theoretically prove that on-manifold adversarial examples can better benefit OOD generalization. Nevertheless, it is nontrivial to generate on-manifold adversarial examples because the real manifold is generally complex. To address this issue, we proposed a novel method of Augmenting data with Adversarial examples via a Wavelet module (AdvWavAug), an on-manifold adversarial data augmentation technique that is simple to implement. In particular, we project a benign image into a wavelet domain. With the assistance of the sparsity characteristic of wavelet transformation, we can modify an image on the estimated data manifold. We conduct adversarial augmentation based on AdvProp training framework. Extensive experiments on different models and different datasets, including ImageNet and its distorted versions, demonstrate that our method can improve model generalization, especially on OOD data. By integrating AdvWavAug into the training process, we have achieved SOTA results on some recent transformer-based models.

A Comprehensive Study on Robustness of Image Classification Models: Benchmarking and Rethinking

The robustness of deep neural networks is usually lacking under adversarial examples, common corruptions, and distribution shifts, which becomes an important research problem in the development of deep learning. Although new deep learning methods and robustness improvement techniques have been constantly proposed, the robustness evaluations of existing methods are often inadequate due to their rapid development, diverse noise patterns, and simple evaluation metrics. Without thorough robustness evaluations, it is hard to understand the advances in the field and identify the effective methods. In this paper, we establish a comprehensive robustness benchmark called \textbf{ARES-Bench} on the image classification task. In our benchmark, we evaluate the robustness of 55 typical deep learning models on ImageNet with diverse architectures (e.g., CNNs, Transformers) and learning algorithms (e.g., normal supervised training, pre-training, adversarial training) under numerous adversarial attacks and out-of-distribution (OOD) datasets. Using robustness curves as the major evaluation criteria, we conduct large-scale experiments and draw several important findings, including: 1) there is an inherent trade-off between adversarial and natural robustness for the same model architecture; 2) adversarial training effectively improves adversarial robustness, especially when performed on Transformer architectures; 3) pre-training significantly improves natural robustness based on more training data or self-supervised learning. Based on ARES-Bench, we further analyze the training tricks in large-scale adversarial training on ImageNet. By designing the training settings accordingly, we achieve the new state-of-the-art adversarial robustness. We have made the benchmarking results and code platform publicly available.

Reveal the Unknown: Out-of-Knowledge-Base Mention Discovery with Entity Linking

Discovering entity mentions that are out of a Knowledge Base (KB) from texts plays a critical role in KB maintenance, but has not yet been fully explored. The current methods are mostly limited to the simple threshold-based approach and feature-based classification; the datasets for evaluation are relatively rare. In this work, we propose BLINKout, a new BERT-based Entity Linking (EL) method which can identify mentions that do not have a corresponding KB entity by matching them to a special NIL entity. To this end, we integrate novel techniques including NIL representation, NIL classification, and synonym enhancement. We also propose Ontology Pruning and Versioning strategies to construct out-of-KB mentions from normal, in-KB EL datasets. Results on four datasets of clinical notes and publications show that BLINKout outperforms existing methods to detect out-of-KB mentions for medical ontologies UMLS and SNOMED CT.

Language Model Analysis for Ontology Subsumption Inference

Pre-trained language models (LMs) have made significant advances in various Natural Language Processing (NLP) domains, but it is unclear to what extent they can infer formal semantics in ontologies, which are often used to represent conceptual knowledge and serve as the schema of data graphs. To investigate an LM's knowledge of ontologies, we propose OntoLAMA, a set of inference-based probing tasks and datasets from ontology subsumption axioms involving both atomic and complex concepts. We conduct extensive experiments on ontologies of different domains and scales, and our results demonstrate that LMs encode relatively less background knowledge of Subsumption Inference (SI) than traditional Natural Language Inference (NLI) but can improve on SI significantly when a small number of samples are given. We will open-source our code and datasets.