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Algorithmic insights on continual learning from fruit flies


Jul 15, 2021
Yang Shen, Sanjoy Dasgupta, Saket Navlakha


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Graph Contrastive Learning Automated


Jun 28, 2021
Yuning You, Tianlong Chen, Yang Shen, Zhangyang Wang

* Supplementary materials are available at https://yyou1996.github.io/files/icml2021_graphcl_automated_supplement.pdf. ICML 2021 

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Fold2Seq: A Joint Sequence(1D)-Fold(3D) Embedding-based Generative Model for Protein Design


Jun 24, 2021
Yue Cao, Payel Das, Vijil Chenthamarakshan, Pin-Yu Chen, Igor Melnyk, Yang Shen

* ICML 2021 

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Cross-Modality Protein Embedding for Compound-Protein Affinity and Contact Prediction


Nov 14, 2020
Yuning You, Yang Shen

* Machine Learning for Structural Biology Workshop, NeurIPS 2020 

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Graph Contrastive Learning with Augmentations


Nov 11, 2020
Yuning You, Tianlong Chen, Yongduo Sui, Ting Chen, Zhangyang Wang, Yang Shen

* Supplementary materials are available at https://yyou1996.github.io/files/neurips2020_graphcl_supplement.pdf. NeurIPS 2020 

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When Does Self-Supervision Help Graph Convolutional Networks?


Jul 04, 2020
Yuning You, Tianlong Chen, Zhangyang Wang, Yang Shen

* Supplementary materials are available at https://yyou1996.github.io/files/icml2020_ssgcn_supplement.pdf. ICML 2020 

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L^2-GCN: Layer-Wise and Learned Efficient Training of Graph Convolutional Networks


Apr 22, 2020
Yuning You, Tianlong Chen, Zhangyang Wang, Yang Shen

* CVPR 2020 

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Explainable Deep Relational Networks for Predicting Compound-Protein Affinities and Contacts


Dec 29, 2019
Mostafa Karimi, Di Wu, Zhangyang Wang, Yang Shen


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Energy-based Graph Convolutional Networks for Scoring Protein Docking Models


Dec 28, 2019
Yue Cao, Yang Shen


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Learning to Optimize in Swarms


Nov 16, 2019
Yue Cao, Tianlong Chen, Zhangyang Wang, Yang Shen

* Accepted to Neural Information Processing Systems (NeurIPS2019) 

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Bayesian active learning for optimization and uncertainty quantification in protein docking


Jan 31, 2019
Yue Cao, Yang Shen


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DeepAffinity: Interpretable Deep Learning of Compound-Protein Affinity through Unified Recurrent and Convolutional Neural Networks


Jun 20, 2018
Mostafa Karimi, Di Wu, Zhangyang Wang, Yang Shen

* https://github.com/Shen-Lab/DeepAffinity 

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Learning Correspondence Structures for Person Re-identification


Apr 27, 2017
Weiyao Lin, Yang Shen, Junchi Yan, Mingliang Xu, Jianxin Wu, Jingdong Wang, Ke Lu

* IEEE Trans. Image Processing, vol. 26, no. 5, pp. 2438-2453, 2017. The project page for this paper is available at http://min.sjtu.edu.cn/lwydemo/personReID.htm arXiv admin note: text overlap with arXiv:1504.06243 

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Person Re-identification with Correspondence Structure Learning


Apr 23, 2015
Yang Shen, Weiyao Lin, Junchi Yan, Mingliang Xu, Jianxin Wu, Jingdong Wang


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