QA-Dragon: Query-Aware Dynamic RAG System for Knowledge-Intensive Visual Question Answering

Retrieval-Augmented Generation (RAG) has been introduced to mitigate hallucinations in Multimodal Large Language Models (MLLMs) by incorporating external knowledge into the generation process, and it has become a widely adopted approach for knowledge-intensive Visual Question Answering (VQA). However, existing RAG methods typically retrieve from either text or images in isolation, limiting their ability to address complex queries that require multi-hop reasoning or up-to-date factual knowledge. To address this limitation, we propose QA-Dragon, a Query-Aware Dynamic RAG System for Knowledge-Intensive VQA. Specifically, QA-Dragon introduces a domain router to identify the query's subject domain for domain-specific reasoning, along with a search router that dynamically selects optimal retrieval strategies. By orchestrating both text and image search agents in a hybrid setup, our system supports multimodal, multi-turn, and multi-hop reasoning, enabling it to tackle complex VQA tasks effectively. We evaluate our QA-Dragon on the Meta CRAG-MM Challenge at KDD Cup 2025, where it significantly enhances the reasoning performance of base models under challenging scenarios. Our framework achieves substantial improvements in both answer accuracy and knowledge overlap scores, outperforming baselines by 5.06% on the single-source task, 6.35% on the multi-source task, and 5.03% on the multi-turn task.

mKG-RAG: Multimodal Knowledge Graph-Enhanced RAG for Visual Question Answering

Recently, Retrieval-Augmented Generation (RAG) has been proposed to expand internal knowledge of Multimodal Large Language Models (MLLMs) by incorporating external knowledge databases into the generation process, which is widely used for knowledge-based Visual Question Answering (VQA) tasks. Despite impressive advancements, vanilla RAG-based VQA methods that rely on unstructured documents and overlook the structural relationships among knowledge elements frequently introduce irrelevant or misleading content, reducing answer accuracy and reliability. To overcome these challenges, a promising solution is to integrate multimodal knowledge graphs (KGs) into RAG-based VQA frameworks to enhance the generation by introducing structured multimodal knowledge. Therefore, in this paper, we propose a novel multimodal knowledge-augmented generation framework (mKG-RAG) based on multimodal KGs for knowledge-intensive VQA tasks. Specifically, our approach leverages MLLM-powered keyword extraction and vision-text matching to distill semantically consistent and modality-aligned entities/relationships from multimodal documents, constructing high-quality multimodal KGs as structured knowledge representations. In addition, a dual-stage retrieval strategy equipped with a question-aware multimodal retriever is introduced to improve retrieval efficiency while refining precision. Comprehensive experiments demonstrate that our approach significantly outperforms existing methods, setting a new state-of-the-art for knowledge-based VQA.

Cross-Domain Transfer and Few-Shot Learning for Personal Identifiable Information Recognition

Accurate recognition of personally identifiable information (PII) is central to automated text anonymization. This paper investigates the effectiveness of cross-domain model transfer, multi-domain data fusion, and sample-efficient learning for PII recognition. Using annotated corpora from healthcare (I2B2), legal (TAB), and biography (Wikipedia), we evaluate models across four dimensions: in-domain performance, cross-domain transferability, fusion, and few-shot learning. Results show legal-domain data transfers well to biographical texts, while medical domains resist incoming transfer. Fusion benefits are domain-specific, and high-quality recognition is achievable with only 10% of training data in low-specialization domains.

Do Protein Transformers Have Biological Intelligence?

Deep neural networks, particularly Transformers, have been widely adopted for predicting the functional properties of proteins. In this work, we focus on exploring whether Protein Transformers can capture biological intelligence among protein sequences. To achieve our goal, we first introduce a protein function dataset, namely Protein-FN, providing over 9000 protein data with meaningful labels. Second, we devise a new Transformer architecture, namely Sequence Protein Transformers (SPT), for computationally efficient protein function predictions. Third, we develop a novel Explainable Artificial Intelligence (XAI) technique called Sequence Score, which can efficiently interpret the decision-making processes of protein models, thereby overcoming the difficulty of deciphering biological intelligence bided in Protein Transformers. Remarkably, even our smallest SPT-Tiny model, which contains only 5.4M parameters, demonstrates impressive predictive accuracy, achieving 94.3% on the Antibiotic Resistance (AR) dataset and 99.6% on the Protein-FN dataset, all accomplished by training from scratch. Besides, our Sequence Score technique helps reveal that our SPT models can discover several meaningful patterns underlying the sequence structures of protein data, with these patterns aligning closely with the domain knowledge in the biology community. We have officially released our Protein-FN dataset on Hugging Face Datasets https://huggingface.co/datasets/Protein-FN/Protein-FN. Our code is available at https://github.com/fudong03/BioIntelligence.

Variational Autoencoder Framework for Hyperspectral Retrievals (Hyper-VAE) of Phytoplankton Absorption and Chlorophyll a in Coastal Waters for NASA's EMIT and PACE Missions

Phytoplankton absorb and scatter light in unique ways, subtly altering the color of water, changes that are often minor for human eyes to detect but can be captured by sensitive ocean color instruments onboard satellites from space. Hyperspectral sensors, paired with advanced algorithms, are expected to significantly enhance the characterization of phytoplankton community composition, especially in coastal waters where ocean color remote sensing applications have historically encountered significant challenges. This study presents novel machine learning-based solutions for NASA's hyperspectral missions, including EMIT and PACE, tackling high-fidelity retrievals of phytoplankton absorption coefficient and chlorophyll a from their hyperspectral remote sensing reflectance. Given that a single Rrs spectrum may correspond to varied combinations of inherent optical properties and associated concentrations, the Variational Autoencoder (VAE) is used as a backbone in this study to handle such multi-distribution prediction problems. We first time tailor the VAE model with innovative designs to achieve hyperspectral retrievals of aphy and of Chl-a from hyperspectral Rrs in optically complex estuarine-coastal waters. Validation with extensive experimental observation demonstrates superior performance of the VAE models with high precision and low bias. The in-depth analysis of VAE's advanced model structures and learning designs highlights the improvement and advantages of VAE-based solutions over the mixture density network (MDN) approach, particularly on high-dimensional data, such as PACE. Our study provides strong evidence that current EMIT and PACE hyperspectral data as well as the upcoming Surface Biology Geology mission will open new pathways toward a better understanding of phytoplankton community dynamics in aquatic ecosystems when integrated with AI technologies.

Resource Heterogeneity-Aware and Utilization-Enhanced Scheduling for Deep Learning Clusters

Scheduling deep learning (DL) models to train on powerful clusters with accelerators like GPUs and TPUs, presently falls short, either lacking fine-grained heterogeneity awareness or leaving resources substantially under-utilized. To fill this gap, we propose a novel design of a task-level heterogeneity-aware scheduler, {\em Hadar}, based on an optimization framework that can boost resource utilization. {\em Hadar} leverages the performance traits of DL jobs on a heterogeneous DL cluster, characterizes the task-level performance heterogeneity in the optimization problem, and makes scheduling decisions across both spatial and temporal dimensions. %with the objective to reduce the average job completion time of DL jobs. It involves the primal-dual framework employing a dual subroutine, to solve the optimization problem and guide the scheduling design. Our trace-driven simulation with representative DL model training workloads demonstrates that {\em Hadar} accelerates the total time duration by 1.20$\times$ when compared with its state-of-the-art heterogeneity-aware counterpart, Gavel. Further, our {\em Hadar} scheduler is enhanced to {\em HadarE} by forking each job into multiple copies to let a job train concurrently on heterogeneous GPUs resided on separate available nodes (i.e., machines or servers) for resource utilization enhancement. {\em HadarE} is evaluated extensively on physical DL clusters for comparison with {\em Hadar} and Gavel. With substantial enhancement in cluster resource utilization (by 1.45$\times$), {\em HadarE} exhibits considerable speed-ups in DL model training, reducing the total time duration by 50\% (or 80\%) on an Amazon's AWS (or our lab) cluster, while producing trained DL models with consistently better inference quality than those trained by \textit{Hadar}.

HiBench: Benchmarking LLMs Capability on Hierarchical Structure Reasoning

Structure reasoning is a fundamental capability of large language models (LLMs), enabling them to reason about structured commonsense and answer multi-hop questions. However, existing benchmarks for structure reasoning mainly focus on horizontal and coordinate structures (\emph{e.g.} graphs), overlooking the hierarchical relationships within them. Hierarchical structure reasoning is crucial for human cognition, particularly in memory organization and problem-solving. It also plays a key role in various real-world tasks, such as information extraction and decision-making. To address this gap, we propose HiBench, the first framework spanning from initial structure generation to final proficiency assessment, designed to benchmark the hierarchical reasoning capabilities of LLMs systematically. HiBench encompasses six representative scenarios, covering both fundamental and practical aspects, and consists of 30 tasks with varying hierarchical complexity, totaling 39,519 queries. To evaluate LLMs comprehensively, we develop five capability dimensions that depict different facets of hierarchical structure understanding. Through extensive evaluation of 20 LLMs from 10 model families, we reveal key insights into their capabilities and limitations: 1) existing LLMs show proficiency in basic hierarchical reasoning tasks; 2) they still struggle with more complex structures and implicit hierarchical representations, especially in structural modification and textual reasoning. Based on these findings, we create a small yet well-designed instruction dataset, which enhances LLMs' performance on HiBench by an average of 88.84\% (Llama-3.1-8B) and 31.38\% (Qwen2.5-7B) across all tasks. The HiBench dataset and toolkit are available here, https://github.com/jzzzzh/HiBench, to encourage evaluation.

GRID: Protecting Training Graph from Link Stealing Attacks on GNN Models

Graph neural networks (GNNs) have exhibited superior performance in various classification tasks on graph-structured data. However, they encounter the potential vulnerability from the link stealing attacks, which can infer the presence of a link between two nodes via measuring the similarity of its incident nodes' prediction vectors produced by a GNN model. Such attacks pose severe security and privacy threats to the training graph used in GNN models. In this work, we propose a novel solution, called Graph Link Disguise (GRID), to defend against link stealing attacks with the formal guarantee of GNN model utility for retaining prediction accuracy. The key idea of GRID is to add carefully crafted noises to the nodes' prediction vectors for disguising adjacent nodes as n-hop indirect neighboring nodes. We take into account the graph topology and select only a subset of nodes (called core nodes) covering all links for adding noises, which can avert the noises offset and have the further advantages of reducing both the distortion loss and the computation cost. Our crafted noises can ensure 1) the noisy prediction vectors of any two adjacent nodes have their similarity level like that of two non-adjacent nodes and 2) the model prediction is unchanged to ensure zero utility loss. Extensive experiments on five datasets are conducted to show the effectiveness of our proposed GRID solution against different representative link-stealing attacks under transductive settings and inductive settings respectively, as well as two influence-based attacks. Meanwhile, it achieves a much better privacy-utility trade-off than existing methods when extended to GNNs.

Regional Weather Variable Predictions by Machine Learning with Near-Surface Observational and Atmospheric Numerical Data

Accurate and timely regional weather prediction is vital for sectors dependent on weather-related decisions. Traditional prediction methods, based on atmospheric equations, often struggle with coarse temporal resolutions and inaccuracies. This paper presents a novel machine learning (ML) model, called MiMa (short for Micro-Macro), that integrates both near-surface observational data from Kentucky Mesonet stations (collected every five minutes, known as Micro data) and hourly atmospheric numerical outputs (termed as Macro data) for fine-resolution weather forecasting. The MiMa model employs an encoder-decoder transformer structure, with two encoders for processing multivariate data from both datasets and a decoder for forecasting weather variables over short time horizons. Each instance of the MiMa model, called a modelet, predicts the values of a specific weather parameter at an individual Mesonet station. The approach is extended with Re-MiMa modelets, which are designed to predict weather variables at ungauged locations by training on multivariate data from a few representative stations in a region, tagged with their elevations. Re-MiMa (short for Regional-MiMa) can provide highly accurate predictions across an entire region, even in areas without observational stations. Experimental results show that MiMa significantly outperforms current models, with Re-MiMa offering precise short-term forecasts for ungauged locations, marking a significant advancement in weather forecasting accuracy and applicability.

BadCM: Invisible Backdoor Attack Against Cross-Modal Learning

Despite remarkable successes in unimodal learning tasks, backdoor attacks against cross-modal learning are still underexplored due to the limited generalization and inferior stealthiness when involving multiple modalities. Notably, since works in this area mainly inherit ideas from unimodal visual attacks, they struggle with dealing with diverse cross-modal attack circumstances and manipulating imperceptible trigger samples, which hinders their practicability in real-world applications. In this paper, we introduce a novel bilateral backdoor to fill in the missing pieces of the puzzle in the cross-modal backdoor and propose a generalized invisible backdoor framework against cross-modal learning (BadCM). Specifically, a cross-modal mining scheme is developed to capture the modality-invariant components as target poisoning areas, where well-designed trigger patterns injected into these regions can be efficiently recognized by the victim models. This strategy is adapted to different image-text cross-modal models, making our framework available to various attack scenarios. Furthermore, for generating poisoned samples of high stealthiness, we conceive modality-specific generators for visual and linguistic modalities that facilitate hiding explicit trigger patterns in modality-invariant regions. To the best of our knowledge, BadCM is the first invisible backdoor method deliberately designed for diverse cross-modal attacks within one unified framework. Comprehensive experimental evaluations on two typical applications, i.e., cross-modal retrieval and VQA, demonstrate the effectiveness and generalization of our method under multiple kinds of attack scenarios. Moreover, we show that BadCM can robustly evade existing backdoor defenses. Our code is available at https://github.com/xandery-geek/BadCM.