HD-Prot: A Protein Language Model for Joint Sequence-Structure Modeling with Continuous Structure Tokens

Proteins inherently possess a consistent sequence-structure duality. The abundance of protein sequence data, which can be readily represented as discrete tokens, has driven fruitful developments in protein language models (pLMs). A key remaining challenge, however, is how to effectively integrate continuous structural knowledge into pLMs. Current methods often discretize protein structures to accommodate the language modeling framework, which inevitably results in the loss of fine-grained information and limits the performance potential of multimodal pLMs. In this paper, we argue that such concerns can be circumvented: a sequence-based pLM can be extended to incorporate the structure modality through continuous tokens, i.e., high-fidelity protein structure latents that avoid vector quantization. Specifically, we propose a hybrid diffusion protein language model, HD-Prot, which embeds a continuous-valued diffusion head atop a discrete pLM, enabling seamless operation with both discrete and continuous tokens for joint sequence-structure modeling. It captures inter-token dependencies across modalities through a unified absorbing diffusion process, and estimates per-token distributions via categorical prediction for sequences and continuous diffusion for structures. Extensive empirical results show that HD-Prot achieves competitive performance in unconditional sequence-structure co-generation, motif-scaffolding, protein structure prediction, and inverse folding tasks, performing on par with state-of-the-art multimodal pLMs despite being developed under limited computational resources. It highlights the viability of simultaneously estimating categorical and continuous distributions within a unified language model architecture, offering a promising alternative direction for multimodal pLMs.

HV-Attack: Hierarchical Visual Attack for Multimodal Retrieval Augmented Generation

Advanced multimodal Retrieval-Augmented Generation (MRAG) techniques have been widely applied to enhance the capabilities of Large Multimodal Models (LMMs), but they also bring along novel safety issues. Existing adversarial research has revealed the vulnerability of MRAG systems to knowledge poisoning attacks, which fool the retriever into recalling injected poisoned contents. However, our work considers a different setting: visual attack of MRAG by solely adding imperceptible perturbations at the image inputs of users, without manipulating any other components. This is challenging due to the robustness of fine-tuned retrievers and large-scale generators, and the effect of visual perturbation may be further weakened by propagation through the RAG chain. We propose a novel Hierarchical Visual Attack that misaligns and disrupts the two inputs (the multimodal query and the augmented knowledge) of MRAG's generator to confuse its generation. We further design a hierarchical two-stage strategy to obtain misaligned augmented knowledge. We disrupt the image input of the retriever to make it recall irrelevant knowledge from the original database, by optimizing the perturbation which first breaks the cross-modal alignment and then disrupts the multimodal semantic alignment. We conduct extensive experiments on two widely-used MRAG datasets: OK-VQA and InfoSeek. We use CLIP-based retrievers and two LMMs BLIP-2 and LLaVA as generators. Results demonstrate the effectiveness of our visual attack on MRAG through the significant decrease in both retrieval and generation performance.

WebRec: Enhancing LLM-based Recommendations with Attention-guided RAG from Web

Recommender systems play a vital role in alleviating information overload and enriching users' online experience. In the era of large language models (LLMs), LLM-based recommender systems have emerged as a prevalent paradigm for advancing personalized recommendations. Recently, retrieval-augmented generation (RAG) has drawn growing interest to facilitate the recommendation capability of LLMs, incorporating useful information retrieved from external knowledge bases. However, as a rich source of up-to-date information, the web remains under-explored by existing RAG-based recommendations. In particular, unique challenges are posed from two perspectives: one is to generate effective queries for web retrieval, considering the inherent knowledge gap between web search and recommendations; another challenge lies in harnessing online websites that contain substantial noisy content. To tackle these limitations, we propose WebRec, a novel web-based RAG framework, which takes advantage of the reasoning capability of LLMs to interpret recommendation tasks into queries of user preferences that cater to web retrieval. Moreover, given noisy web-retrieved information, where relevant pieces of evidence are scattered far apart, an insightful MP-Head is designed to enhance LLM attentions between distant tokens of relevant information via message passing. Extensive experiments have been conducted to demonstrate the effectiveness of our proposed web-based RAG methods in recommendation scenarios.

Continuous-time Discrete-space Diffusion Model for Recommendation

In the era of information explosion, Recommender Systems (RS) are essential for alleviating information overload and providing personalized user experiences. Recent advances in diffusion-based generative recommenders have shown promise in capturing the dynamic nature of user preferences. These approaches explore a broader range of user interests by progressively perturbing the distribution of user-item interactions and recovering potential preferences from noise, enabling nuanced behavioral understanding. However, existing diffusion-based approaches predominantly operate in continuous space through encoded graph-based historical interactions, which may compromise potential information loss and suffer from computational inefficiency. As such, we propose CDRec, a novel Continuous-time Discrete-space Diffusion Recommendation framework, which models user behavior patterns through discrete diffusion on historical interactions over continuous time. The discrete diffusion algorithm operates via discrete element operations (e.g., masking) while incorporating domain knowledge through transition matrices, producing more meaningful diffusion trajectories. Furthermore, the continuous-time formulation enables flexible adaptive sampling. To better adapt discrete diffusion models to recommendations, CDRec introduces: (1) a novel popularity-aware noise schedule that generates semantically meaningful diffusion trajectories, and (2) an efficient training framework combining consistency parameterization for fast sampling and a contrastive learning objective guided by multi-hop collaborative signals for personalized recommendation. Extensive experiments on real-world datasets demonstrate CDRec's superior performance in both recommendation accuracy and computational efficiency.

Rethinking Domain-Specific LLM Benchmark Construction: A Comprehensiveness-Compactness Approach

Numerous benchmarks have been built to evaluate the domain-specific abilities of large language models (LLMs), highlighting the need for effective and efficient benchmark construction. Existing domain-specific benchmarks primarily focus on the scaling law, relying on massive corpora for supervised fine-tuning or generating extensive question sets for broad coverage. However, the impact of corpus and question-answer (QA) set design on the precision and recall of domain-specific LLMs remains unexplored. In this paper, we address this gap and demonstrate that the scaling law is not always the optimal principle for benchmark construction in specific domains. Instead, we propose Comp-Comp, an iterative benchmarking framework based on a comprehensiveness-compactness principle. Here, comprehensiveness ensures semantic recall of the domain, while compactness enhances precision, guiding both corpus and QA set construction. To validate our framework, we conducted a case study in a well-renowned university, resulting in the creation of XUBench, a large-scale and comprehensive closed-domain benchmark. Although we use the academic domain as the case in this work, our Comp-Comp framework is designed to be extensible beyond academia, providing valuable insights for benchmark construction across various domains.

mKG-RAG: Multimodal Knowledge Graph-Enhanced RAG for Visual Question Answering

Recently, Retrieval-Augmented Generation (RAG) has been proposed to expand internal knowledge of Multimodal Large Language Models (MLLMs) by incorporating external knowledge databases into the generation process, which is widely used for knowledge-based Visual Question Answering (VQA) tasks. Despite impressive advancements, vanilla RAG-based VQA methods that rely on unstructured documents and overlook the structural relationships among knowledge elements frequently introduce irrelevant or misleading content, reducing answer accuracy and reliability. To overcome these challenges, a promising solution is to integrate multimodal knowledge graphs (KGs) into RAG-based VQA frameworks to enhance the generation by introducing structured multimodal knowledge. Therefore, in this paper, we propose a novel multimodal knowledge-augmented generation framework (mKG-RAG) based on multimodal KGs for knowledge-intensive VQA tasks. Specifically, our approach leverages MLLM-powered keyword extraction and vision-text matching to distill semantically consistent and modality-aligned entities/relationships from multimodal documents, constructing high-quality multimodal KGs as structured knowledge representations. In addition, a dual-stage retrieval strategy equipped with a question-aware multimodal retriever is introduced to improve retrieval efficiency while refining precision. Comprehensive experiments demonstrate that our approach significantly outperforms existing methods, setting a new state-of-the-art for knowledge-based VQA.

QA-Dragon: Query-Aware Dynamic RAG System for Knowledge-Intensive Visual Question Answering

Retrieval-Augmented Generation (RAG) has been introduced to mitigate hallucinations in Multimodal Large Language Models (MLLMs) by incorporating external knowledge into the generation process, and it has become a widely adopted approach for knowledge-intensive Visual Question Answering (VQA). However, existing RAG methods typically retrieve from either text or images in isolation, limiting their ability to address complex queries that require multi-hop reasoning or up-to-date factual knowledge. To address this limitation, we propose QA-Dragon, a Query-Aware Dynamic RAG System for Knowledge-Intensive VQA. Specifically, QA-Dragon introduces a domain router to identify the query's subject domain for domain-specific reasoning, along with a search router that dynamically selects optimal retrieval strategies. By orchestrating both text and image search agents in a hybrid setup, our system supports multimodal, multi-turn, and multi-hop reasoning, enabling it to tackle complex VQA tasks effectively. We evaluate our QA-Dragon on the Meta CRAG-MM Challenge at KDD Cup 2025, where it significantly enhances the reasoning performance of base models under challenging scenarios. Our framework achieves substantial improvements in both answer accuracy and knowledge overlap scores, outperforming baselines by 5.06% on the single-source task, 6.35% on the multi-source task, and 5.03% on the multi-turn task.

iTFKAN: Interpretable Time Series Forecasting with Kolmogorov-Arnold Network

As time evolves, data within specific domains exhibit predictability that motivates time series forecasting to predict future trends from historical data. However, current deep forecasting methods can achieve promising performance but generally lack interpretability, hindering trustworthiness and practical deployment in safety-critical applications such as auto-driving and healthcare. In this paper, we propose a novel interpretable model, iTFKAN, for credible time series forecasting. iTFKAN enables further exploration of model decision rationales and underlying data patterns due to its interpretability achieved through model symbolization. Besides, iTFKAN develops two strategies, prior knowledge injection, and time-frequency synergy learning, to effectively guide model learning under complex intertwined time series data. Extensive experimental results demonstrated that iTFKAN can achieve promising forecasting performance while simultaneously possessing high interpretive capabilities.

Generative Recommendation with Continuous-Token Diffusion

In recent years, there has been a significant trend toward using large language model (LLM)-based recommender systems (RecSys). Current research primarily focuses on representing complex user-item interactions within a discrete space to align with the inherent discrete nature of language models. However, this approach faces limitations due to its discrete nature: (i) information is often compressed during discretization; (ii) the tokenization and generation for the vast number of users and items in real-world scenarios are constrained by a limited vocabulary. Embracing continuous data presents a promising alternative to enhance expressive capabilities, though this approach is still in its early stages. To address this gap, we propose a novel framework, DeftRec, which incorporates \textbf{de}noising di\textbf{f}fusion models to enable LLM-based RecSys to seamlessly support continuous \textbf{t}oken as input and target. First, we introduce a robust tokenizer with a masking operation and an additive K-way architecture to index users and items, capturing their complex collaborative relationships into continuous tokens. Crucially, we develop a denoising diffusion model to process user preferences within continuous domains by conditioning on reasoning content from pre-trained large language model. During the denoising process, we reformulate the objective to include negative interactions, building a comprehensive understanding of user preferences for effective and accurate recommendation generation. Finally, given a continuous token as output, recommendations can be easily generated through score-based retrieval. Extensive experiments demonstrate the effectiveness of the proposed methods, showing that DeftRec surpasses competitive benchmarks, including both traditional and emerging LLM-based RecSys.

SemDiff: Generating Natural Unrestricted Adversarial Examples via Semantic Attributes Optimization in Diffusion Models

Unrestricted adversarial examples (UAEs), allow the attacker to create non-constrained adversarial examples without given clean samples, posing a severe threat to the safety of deep learning models. Recent works utilize diffusion models to generate UAEs. However, these UAEs often lack naturalness and imperceptibility due to simply optimizing in intermediate latent noises. In light of this, we propose SemDiff, a novel unrestricted adversarial attack that explores the semantic latent space of diffusion models for meaningful attributes, and devises a multi-attributes optimization approach to ensure attack success while maintaining the naturalness and imperceptibility of generated UAEs. We perform extensive experiments on four tasks on three high-resolution datasets, including CelebA-HQ, AFHQ and ImageNet. The results demonstrate that SemDiff outperforms state-of-the-art methods in terms of attack success rate and imperceptibility. The generated UAEs are natural and exhibit semantically meaningful changes, in accord with the attributes' weights. In addition, SemDiff is found capable of evading different defenses, which further validates its effectiveness and threatening.