BioVFM-21M: Benchmarking and Scaling Self-Supervised Vision Foundation Models for Biomedical Image Analysis

Scaling up model and data size have demonstrated impressive performance improvement over a wide range of tasks. Despite extensive studies on scaling behaviors for general-purpose tasks, medical images exhibit substantial differences from natural data. It remains unclear the key factors in developing medical vision foundation models at scale due to the absence of an extensive understanding of scaling behavior in the medical domain. In this paper, we explored the scaling behavior across model sizes, training algorithms, data sizes, and imaging modalities in developing scalable medical vision foundation models by self-supervised learning. To support scalable pretraining, we introduce BioVFM-21M, a large-scale biomedical image dataset encompassing a wide range of biomedical image modalities and anatomies. We observed that scaling up does provide benefits but varies across tasks. Additional analysis reveals several factors correlated with scaling benefits. Finally, we propose BioVFM, a large-scale medical vision foundation model pretrained on 21 million biomedical images, which outperforms the previous state-of-the-art foundation models across 12 medical benchmarks. Our results highlight that while scaling up is beneficial for pursuing better performance, task characteristics, data diversity, pretraining methods, and computational efficiency remain critical considerations for developing scalable medical foundation models.

Intelligent4DSE: Optimizing High-Level Synthesis Design Space Exploration with Graph Neural Networks and Large Language Models

High-level synthesis (HLS) design space exploration (DSE) is an optimization process in electronic design automation (EDA) that systematically explores high-level design configurations to achieve Pareto-optimal hardware implementations balancing performance, area, and power (PPA). To optimize this process, HLS prediction tasks often employ message-passing neural networks (MPNNs), leveraging complex architectures to achieve high accuracy. These predictors serve as evaluators in the DSE process, effectively bypassing the time-consuming estimations traditionally required by HLS tools. However, existing models often prioritize structural complexity and minimization of training loss, overlooking task-specific characteristics. Additionally, while evolutionary algorithms are widely used in DSE, they typically require extensive domain-specific knowledge to design effective crossover and mutation operators. To address these limitations, we propose CoGNNs-LLMEA, a framework that integrates a graph neural network with task-adaptive message passing and a large language model-enhanced evolutionary algorithm. As a predictive model, CoGNNs directly leverages intermediate representations generated from source code after compiler front-end processing, enabling prediction of quality of results (QoR) without invoking HLS tools. Due to its strong adaptability to tasks, CoGNNs can be tuned to predict post-HLS and post-implementation outcomes, effectively bridging the gap between high-level abstractions and physical implementation characteristics. CoGNNs achieves state-of-the-art prediction accuracy in post-HLS QoR prediction, reducing mean prediction errors by 2.8$\times$ for latency and 3.4$\times$ for resource utilization compared to baseline models.

Inland Waterway Object Detection in Multi-environment: Dataset and Approach

The success of deep learning in intelligent ship visual perception relies heavily on rich image data. However, dedicated datasets for inland waterway vessels remain scarce, limiting the adaptability of visual perception systems in complex environments. Inland waterways, characterized by narrow channels, variable weather, and urban interference, pose significant challenges to object detection systems based on existing datasets. To address these issues, this paper introduces the Multi-environment Inland Waterway Vessel Dataset (MEIWVD), comprising 32,478 high-quality images from diverse scenarios, including sunny, rainy, foggy, and artificial lighting conditions. MEIWVD covers common vessel types in the Yangtze River Basin, emphasizing diversity, sample independence, environmental complexity, and multi-scale characteristics, making it a robust benchmark for vessel detection. Leveraging MEIWVD, this paper proposes a scene-guided image enhancement module to improve water surface images based on environmental conditions adaptively. Additionally, a parameter-limited dilated convolution enhances the representation of vessel features, while a multi-scale dilated residual fusion method integrates multi-scale features for better detection. Experiments show that MEIWVD provides a more rigorous benchmark for object detection algorithms, and the proposed methods significantly improve detector performance, especially in complex multi-environment scenarios.

ExposNet: A Deep Learning Framework for EMF Exposure Prediction in Complex Urban Environments

The prediction of the electric field (E-field) plays a crucial role in monitoring radiofrequency electromagnetic field (RF-EMF) exposure induced by cellular networks. In this paper, a deep learning framework is proposed to predict E-field levels in complex urban environments. First, the measurement campaign and publicly accessible databases used to construct the training dataset are introduced, with a detailed explanation provided on how these datasets are formulated and integrated to enhance their suitability for Convolutional Neural Networks (CNNs)-based models. Then, the proposed model, ExposNet, is presented, and its network architecture and workflow are thoroughly explained. Two variations of the network structure are proposed, and extensive experimental analyses are conducted, demonstrating that ExposNet achieves good prediction accuracy with both configurations. Furthermore, the generalization capability of the model is evaluated. The overall results indicate that, despite being trained and tested on real-world measurements, the model performs well and achieves better accuracy compared to previous studies.

3D Anatomical Structure-guided Deep Learning for Accurate Diffusion Microstructure Imaging

Diffusion magnetic resonance imaging (dMRI) is a crucial non-invasive technique for exploring the microstructure of the living human brain. Traditional hand-crafted and model-based tissue microstructure reconstruction methods often require extensive diffusion gradient sampling, which can be time-consuming and limits the clinical applicability of tissue microstructure information. Recent advances in deep learning have shown promise in microstructure estimation; however, accurately estimating tissue microstructure from clinically feasible dMRI scans remains challenging without appropriate constraints. This paper introduces a novel framework that achieves high-fidelity and rapid diffusion microstructure imaging by simultaneously leveraging anatomical information from macro-level priors and mutual information across parameters. This approach enhances time efficiency while maintaining accuracy in microstructure estimation. Experimental results demonstrate that our method outperforms four state-of-the-art techniques, achieving a peak signal-to-noise ratio (PSNR) of 30.51$\pm$0.58 and a structural similarity index measure (SSIM) of 0.97$\pm$0.004 in estimating parametric maps of multiple diffusion models. Notably, our method achieves a 15$\times$ acceleration compared to the dense sampling approach, which typically utilizes 270 diffusion gradients.

Spatial-Angular Representation Learning for High-Fidelity Continuous Super-Resolution in Diffusion MRI

Diffusion magnetic resonance imaging (dMRI) often suffers from low spatial and angular resolution due to inherent limitations in imaging hardware and system noise, adversely affecting the accurate estimation of microstructural parameters with fine anatomical details. Deep learning-based super-resolution techniques have shown promise in enhancing dMRI resolution without increasing acquisition time. However, most existing methods are confined to either spatial or angular super-resolution, limiting their effectiveness in capturing detailed microstructural features. Furthermore, traditional pixel-wise loss functions struggle to recover intricate image details essential for high-resolution reconstruction. To address these challenges, we propose SARL-dMRI, a novel Spatial-Angular Representation Learning framework for high-fidelity, continuous super-resolution in dMRI. SARL-dMRI explores implicit neural representations and spherical harmonics to model continuous spatial and angular representations, simultaneously enhancing both spatial and angular resolution while improving microstructural parameter estimation accuracy. To further preserve image fidelity, a data-fidelity module and wavelet-based frequency loss are introduced, ensuring the super-resolved images remain consistent with the original input and retain fine details. Extensive experiments demonstrate that, compared to five other state-of-the-art methods, our method significantly enhances dMRI data resolution, improves the accuracy of microstructural parameter estimation, and provides better generalization capabilities. It maintains stable performance even under a 45$\times$ downsampling factor.

Learning states enhanced knowledge tracing: Simulating the diversity in real-world learning process

The Knowledge Tracing (KT) task focuses on predicting a learner's future performance based on the historical interactions. The knowledge state plays a key role in learning process. However, considering that the knowledge state is influenced by various learning factors in the interaction process, such as the exercises similarities, responses reliability and the learner's learning state. Previous models still face two major limitations. First, due to the exercises differences caused by various complex reasons and the unreliability of responses caused by guessing behavior, it is hard to locate the historical interaction which is most relevant to the current answered exercise. Second, the learning state is also a key factor to influence the knowledge state, which is always ignored by previous methods. To address these issues, we propose a new method named Learning State Enhanced Knowledge Tracing (LSKT). Firstly, to simulate the potential differences in interactions, inspired by Item Response Theory~(IRT) paradigm, we designed three different embedding methods ranging from coarse-grained to fine-grained views and conduct comparative analysis on them. Secondly, we design a learning state extraction module to capture the changing learning state during the learning process of the learner. In turn, with the help of the extracted learning state, a more detailed knowledge state could be captured. Experimental results on four real-world datasets show that our LSKT method outperforms the current state-of-the-art methods.

Diff5T: Benchmarking Human Brain Diffusion MRI with an Extensive 5.0 Tesla K-Space and Spatial Dataset

Diffusion magnetic resonance imaging (dMRI) provides critical insights into the microstructural and connectional organization of the human brain. However, the availability of high-field, open-access datasets that include raw k-space data for advanced research remains limited. To address this gap, we introduce Diff5T, a first comprehensive 5.0 Tesla diffusion MRI dataset focusing on the human brain. This dataset includes raw k-space data and reconstructed diffusion images, acquired using a variety of imaging protocols. Diff5T is designed to support the development and benchmarking of innovative methods in artifact correction, image reconstruction, image preprocessing, diffusion modelling and tractography. The dataset features a wide range of diffusion parameters, including multiple b-values and gradient directions, allowing extensive research applications in studying human brain microstructure and connectivity. With its emphasis on open accessibility and detailed benchmarks, Diff5T serves as a valuable resource for advancing human brain mapping research using diffusion MRI, fostering reproducibility, and enabling collaboration across the neuroscience and medical imaging communities.

Optimized Vessel Segmentation: A Structure-Agnostic Approach with Small Vessel Enhancement and Morphological Correction

Accurate segmentation of blood vessels is essential for various clinical assessments and postoperative analyses. However, the inherent challenges of vascular imaging, such as sparsity, fine granularity, low contrast, data distribution variability, and the critical need for preserving topological structure, making generalized vessel segmentation particularly complex. While specialized segmentation methods have been developed for specific anatomical regions, their over-reliance on tailored models hinders broader applicability and generalization. General-purpose segmentation models introduced in medical imaging often fail to address critical vascular characteristics, including the connectivity of segmentation results. To overcome these limitations, we propose an optimized vessel segmentation framework: a structure-agnostic approach incorporating small vessel enhancement and morphological correction for multi-modality vessel segmentation. To train and validate this framework, we compiled a comprehensive multi-modality dataset spanning 17 datasets and benchmarked our model against six SAM-based methods and 17 expert models. The results demonstrate that our approach achieves superior segmentation accuracy, generalization, and a 34.6% improvement in connectivity, underscoring its clinical potential. An ablation study further validates the effectiveness of the proposed improvements. We will release the code and dataset at github following the publication of this work.

SamRobNODDI: Q-Space Sampling-Augmented Continuous Representation Learning for Robust and Generalized NODDI

Neurite Orientation Dispersion and Density Imaging (NODDI) microstructure estimation from diffusion magnetic resonance imaging (dMRI) is of great significance for the discovery and treatment of various neurological diseases. Current deep learning-based methods accelerate the speed of NODDI parameter estimation and improve the accuracy. However, most methods require the number and coordinates of gradient directions during testing and training to remain strictly consistent, significantly limiting the generalization and robustness of these models in NODDI parameter estimation. In this paper, we propose a q-space sampling augmentation-based continuous representation learning framework (SamRobNODDI) to achieve robust and generalized NODDI. Specifically, a continuous representation learning method based on q-space sampling augmentation is introduced to fully explore the information between different gradient directions in q-space. Furthermore, we design a sampling consistency loss to constrain the outputs of different sampling schemes, ensuring that the outputs remain as consistent as possible, thereby further enhancing performance and robustness to varying q-space sampling schemes. SamRobNODDI is also a flexible framework that can be applied to different backbone networks. To validate the effectiveness of the proposed method, we compared it with 7 state-of-the-art methods across 18 different q-space sampling schemes, demonstrating that the proposed SamRobNODDI has better performance, robustness, generalization, and flexibility.